HEADER OXIDOREDUCTASE 28-JAN-16 5HV0 TITLE STRUCTURAL ANALYSIS OF COFACTOR BINDING OF A PROLYL 4-HYDROXYLASE FROM TITLE 2 THE PATHOGENIC BACTERIUM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL 4-HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2OG-FE(II) OXYGENASE SUPERFAMILY PROTEIN,PROLYL 4- COMPND 5 HYDROXYLASE,ALPHA SUBUNIT DOMAIN PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P4H, DIOXYGENASE, CUPIN, FE(II)/ALPHA-KETOGLUTARATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.J.SCHNICKER,M.DEY REVDAT 2 18-MAY-16 5HV0 1 JRNL REVDAT 1 04-MAY-16 5HV0 0 JRNL AUTH N.J.SCHNICKER,M.DEY JRNL TITL STRUCTURAL ANALYSIS OF COFACTOR BINDING FOR A PROLYL JRNL TITL 2 4-HYDROXYLASE FROM THE PATHOGENIC BACTERIUM BACILLUS JRNL TITL 3 ANTHRACIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 675 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27139630 JRNL DOI 10.1107/S2059798316004198 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 58323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1279 - 4.4949 0.99 2645 119 0.1660 0.1843 REMARK 3 2 4.4949 - 3.5685 1.00 2618 174 0.1429 0.1810 REMARK 3 3 3.5685 - 3.1177 1.00 2659 134 0.1627 0.1943 REMARK 3 4 3.1177 - 2.8327 1.00 2636 144 0.1757 0.2204 REMARK 3 5 2.8327 - 2.6297 1.00 2641 156 0.1811 0.2200 REMARK 3 6 2.6297 - 2.4747 1.00 2642 135 0.1814 0.2304 REMARK 3 7 2.4747 - 2.3508 1.00 2616 154 0.1748 0.2198 REMARK 3 8 2.3508 - 2.2485 1.00 2659 145 0.1694 0.2374 REMARK 3 9 2.2485 - 2.1619 1.00 2622 184 0.1759 0.2308 REMARK 3 10 2.1619 - 2.0873 1.00 2668 108 0.1744 0.2331 REMARK 3 11 2.0873 - 2.0220 1.00 2690 130 0.1794 0.2106 REMARK 3 12 2.0220 - 1.9642 1.00 2562 186 0.1878 0.2323 REMARK 3 13 1.9642 - 1.9125 1.00 2668 146 0.1885 0.2403 REMARK 3 14 1.9125 - 1.8659 1.00 2679 132 0.1891 0.2363 REMARK 3 15 1.8659 - 1.8235 1.00 2588 118 0.1879 0.2186 REMARK 3 16 1.8235 - 1.7847 1.00 2701 130 0.1897 0.2483 REMARK 3 17 1.7847 - 1.7490 0.99 2662 133 0.1969 0.2396 REMARK 3 18 1.7490 - 1.7160 0.99 2589 140 0.2006 0.2520 REMARK 3 19 1.7160 - 1.6853 0.98 2600 137 0.2024 0.2257 REMARK 3 20 1.6853 - 1.6567 0.98 2609 129 0.2012 0.2691 REMARK 3 21 1.6567 - 1.6300 0.98 2608 127 0.2235 0.2588 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.025 3338 REMARK 3 ANGLE : 0.841 4530 REMARK 3 CHIRALITY : 0.078 490 REMARK 3 PLANARITY : 0.004 583 REMARK 3 DIHEDRAL : 19.571 1195 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000215959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 39.117 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ITQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 0.05 M CADMIUM REMARK 280 SULFATE, 0.9 M SODIUM ACETATE TRI-HYDRATE, 0.1 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 302 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 ARG A 73 REMARK 465 ASP A 74 REMARK 465 VAL A 75 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 THR B 2 REMARK 465 ALA B 65 REMARK 465 ARG B 66 REMARK 465 SER B 67 REMARK 465 LYS B 68 REMARK 465 VAL B 69 REMARK 465 GLY B 70 REMARK 465 SER B 71 REMARK 465 SER B 72 REMARK 465 ARG B 73 REMARK 465 ASP B 74 REMARK 465 VAL B 75 REMARK 465 ASN B 76 REMARK 465 ASP B 77 REMARK 465 ILE B 78 REMARK 465 ARG B 79 REMARK 465 THR B 80 REMARK 465 SER B 81 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 ILE A 7 CG1 CG2 CD1 REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 37 CD OE1 OE2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 SER A 71 OG REMARK 470 SER A 72 OG REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 125 CD CE NZ REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 ASN B 4 CG OD1 ND2 REMARK 470 ASN B 10 CG OD1 ND2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLN B 13 CD OE1 NE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 SER B 82 OG REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 GLN B 183 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 505 O HOH A 514 2.10 REMARK 500 O HOH A 526 O HOH A 561 2.12 REMARK 500 OD1 ASP B 88 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 532 O HOH A 532 3465 1.28 REMARK 500 O HOH A 564 O HOH B 555 2675 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 -9.41 81.37 REMARK 500 TYR A 180 53.27 -155.70 REMARK 500 ASP B 121 -6.30 73.14 REMARK 500 TYR B 180 52.75 -154.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 305 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 ND1 REMARK 620 2 HOH A 414 O 94.9 REMARK 620 3 HOH A 550 O 107.0 88.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 311 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 80 O REMARK 620 2 SER A 82 O 101.8 REMARK 620 3 HOH A 425 O 82.9 49.6 REMARK 620 4 HOH A 551 O 98.4 90.3 138.5 REMARK 620 5 HOH A 576 O 77.0 160.3 111.2 109.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 306 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE1 REMARK 620 2 GLU A 119 OE2 48.6 REMARK 620 3 ASP B 50 OD1 134.0 106.8 REMARK 620 4 ASP B 50 OD2 136.6 106.7 3.6 REMARK 620 5 ASP B 54 OD2 137.9 110.4 4.1 4.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 127 NE2 REMARK 620 2 ASP A 129 OD1 93.3 REMARK 620 3 HIS A 193 NE2 99.5 97.3 REMARK 620 4 AKG A 310 O5 88.8 175.6 86.1 REMARK 620 5 AKG A 310 O2 124.0 100.4 131.4 75.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 309 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 134 NE2 REMARK 620 2 HOH A 574 O 75.2 REMARK 620 3 HOH B 427 O 82.8 141.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 308 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 154 OE1 REMARK 620 2 GLU A 154 OE2 51.0 REMARK 620 3 GLU B 51 OE1 57.6 79.0 REMARK 620 4 GLU B 51 OE2 59.4 79.2 2.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 ND1 REMARK 620 2 HOH B 417 O 98.9 REMARK 620 3 HOH B 535 O 111.2 80.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 127 NE2 REMARK 620 2 ASP B 129 OD1 89.4 REMARK 620 3 HIS B 193 NE2 96.2 93.5 REMARK 620 4 AKG B 306 O1 124.4 106.2 134.0 REMARK 620 5 AKG B 306 O5 86.3 172.6 93.1 71.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 432 O REMARK 620 2 HOH B 415 O 144.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HV4 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THIS IS A CLONING ARTIFACT FROM THE RESTRICTION REMARK 999 SITE. DBREF 5HV0 A 2 216 UNP Q81LZ8 Q81LZ8_BACAN 2 216 DBREF 5HV0 B 2 216 UNP Q81LZ8 Q81LZ8_BACAN 2 216 SEQADV 5HV0 MET A 0 UNP Q81LZ8 INITIATING METHIONINE SEQADV 5HV0 ALA A 1 UNP Q81LZ8 SEE REMARK 999 SEQADV 5HV0 MET B 0 UNP Q81LZ8 INITIATING METHIONINE SEQADV 5HV0 ALA B 1 UNP Q81LZ8 SEE REMARK 999 SEQRES 1 A 217 MET ALA THR ASN ASN ASN GLN ILE GLY GLU ASN LYS GLU SEQRES 2 A 217 GLN THR ILE PHE ASP HIS LYS GLY ASN VAL ILE LYS THR SEQRES 3 A 217 GLU ASP ARG GLU ILE GLN ILE ILE SER LYS PHE GLU GLU SEQRES 4 A 217 PRO LEU ILE VAL VAL LEU GLY ASN VAL LEU SER ASP GLU SEQRES 5 A 217 GLU CYS ASP GLU LEU ILE GLU LEU SER LYS SER LYS LEU SEQRES 6 A 217 ALA ARG SER LYS VAL GLY SER SER ARG ASP VAL ASN ASP SEQRES 7 A 217 ILE ARG THR SER SER GLY ALA PHE LEU ASP ASP ASN GLU SEQRES 8 A 217 LEU THR ALA LYS ILE GLU LYS ARG ILE SER SER ILE MET SEQRES 9 A 217 ASN VAL PRO ALA SER HIS GLY GLU GLY LEU HIS ILE LEU SEQRES 10 A 217 ASN TYR GLU VAL ASP GLN GLN TYR LYS ALA HIS TYR ASP SEQRES 11 A 217 TYR PHE ALA GLU HIS SER ARG SER ALA ALA ASN ASN ARG SEQRES 12 A 217 ILE SER THR LEU VAL MET TYR LEU ASN ASP VAL GLU GLU SEQRES 13 A 217 GLY GLY GLU THR PHE PHE PRO LYS LEU ASN LEU SER VAL SEQRES 14 A 217 HIS PRO ARG LYS GLY MET ALA VAL TYR PHE GLU TYR PHE SEQRES 15 A 217 TYR GLN ASP GLN SER LEU ASN GLU LEU THR LEU HIS GLY SEQRES 16 A 217 GLY ALA PRO VAL THR LYS GLY GLU LYS TRP ILE ALA THR SEQRES 17 A 217 GLN TRP VAL ARG ARG GLY THR TYR LYS SEQRES 1 B 217 MET ALA THR ASN ASN ASN GLN ILE GLY GLU ASN LYS GLU SEQRES 2 B 217 GLN THR ILE PHE ASP HIS LYS GLY ASN VAL ILE LYS THR SEQRES 3 B 217 GLU ASP ARG GLU ILE GLN ILE ILE SER LYS PHE GLU GLU SEQRES 4 B 217 PRO LEU ILE VAL VAL LEU GLY ASN VAL LEU SER ASP GLU SEQRES 5 B 217 GLU CYS ASP GLU LEU ILE GLU LEU SER LYS SER LYS LEU SEQRES 6 B 217 ALA ARG SER LYS VAL GLY SER SER ARG ASP VAL ASN ASP SEQRES 7 B 217 ILE ARG THR SER SER GLY ALA PHE LEU ASP ASP ASN GLU SEQRES 8 B 217 LEU THR ALA LYS ILE GLU LYS ARG ILE SER SER ILE MET SEQRES 9 B 217 ASN VAL PRO ALA SER HIS GLY GLU GLY LEU HIS ILE LEU SEQRES 10 B 217 ASN TYR GLU VAL ASP GLN GLN TYR LYS ALA HIS TYR ASP SEQRES 11 B 217 TYR PHE ALA GLU HIS SER ARG SER ALA ALA ASN ASN ARG SEQRES 12 B 217 ILE SER THR LEU VAL MET TYR LEU ASN ASP VAL GLU GLU SEQRES 13 B 217 GLY GLY GLU THR PHE PHE PRO LYS LEU ASN LEU SER VAL SEQRES 14 B 217 HIS PRO ARG LYS GLY MET ALA VAL TYR PHE GLU TYR PHE SEQRES 15 B 217 TYR GLN ASP GLN SER LEU ASN GLU LEU THR LEU HIS GLY SEQRES 16 B 217 GLY ALA PRO VAL THR LYS GLY GLU LYS TRP ILE ALA THR SEQRES 17 B 217 GLN TRP VAL ARG ARG GLY THR TYR LYS HET CD A 301 1 HET CD A 302 1 HET CD A 303 1 HET CD A 304 1 HET CD A 305 1 HET CD A 306 1 HET CD A 307 1 HET CD A 308 1 HET CD A 309 2 HET AKG A 310 10 HET K A 311 1 HET GOL A 312 6 HET CD B 301 1 HET CD B 302 1 HET CD B 303 1 HET CD B 304 1 HET CD B 305 2 HET AKG B 306 10 HET GOL B 307 6 HETNAM CD CADMIUM ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CD 14(CD 2+) FORMUL 12 AKG 2(C5 H6 O5) FORMUL 13 K K 1+ FORMUL 14 GOL 2(C3 H8 O3) FORMUL 22 HOH *426(H2 O) HELIX 1 AA1 SER A 49 LYS A 61 1 13 HELIX 2 AA2 ASN A 89 ASN A 104 1 16 HELIX 3 AA3 PRO A 106 GLY A 110 5 5 HELIX 4 AA4 SER A 135 ASN A 140 5 6 HELIX 5 AA5 ASP A 184 LEU A 190 1 7 HELIX 6 AA6 SER B 49 LEU B 64 1 16 HELIX 7 AA7 ASN B 89 ASN B 104 1 16 HELIX 8 AA8 PRO B 106 GLY B 110 5 5 HELIX 9 AA9 ARG B 136 ASN B 140 5 5 HELIX 10 AB1 ASP B 184 LEU B 190 1 7 SHEET 1 AA1 8 VAL A 22 LYS A 24 0 SHEET 2 AA1 8 GLU A 29 PHE A 36 -1 O ILE A 30 N ILE A 23 SHEET 3 AA1 8 ILE A 41 GLY A 45 -1 O GLY A 45 N GLN A 31 SHEET 4 AA1 8 ALA A 175 GLU A 179 -1 O ALA A 175 N LEU A 44 SHEET 5 AA1 8 ARG A 142 TYR A 149 -1 N VAL A 147 O VAL A 176 SHEET 6 AA1 8 LYS A 203 ARG A 211 -1 O ALA A 206 N MET A 148 SHEET 7 AA1 8 HIS A 114 TYR A 118 -1 N TYR A 118 O LYS A 203 SHEET 8 AA1 8 ALA A 84 PHE A 85 -1 N ALA A 84 O ILE A 115 SHEET 1 AA2 6 VAL A 22 LYS A 24 0 SHEET 2 AA2 6 GLU A 29 PHE A 36 -1 O ILE A 30 N ILE A 23 SHEET 3 AA2 6 LEU B 166 VAL B 168 -1 O SER B 167 N LYS A 35 SHEET 4 AA2 6 THR B 159 PHE B 160 -1 N THR B 159 O VAL B 168 SHEET 5 AA2 6 HIS B 193 GLY B 195 -1 O GLY B 194 N PHE B 160 SHEET 6 AA2 6 TYR B 124 HIS B 127 -1 N TYR B 124 O GLY B 195 SHEET 1 AA3 6 TYR A 124 HIS A 127 0 SHEET 2 AA3 6 HIS A 193 GLY A 195 -1 O GLY A 195 N TYR A 124 SHEET 3 AA3 6 THR A 159 PHE A 160 -1 N PHE A 160 O GLY A 194 SHEET 4 AA3 6 LEU A 166 VAL A 168 -1 O VAL A 168 N THR A 159 SHEET 5 AA3 6 GLU B 29 PHE B 36 -1 O LYS B 35 N SER A 167 SHEET 6 AA3 6 VAL B 22 LYS B 24 -1 N ILE B 23 O ILE B 30 SHEET 1 AA411 TYR A 124 HIS A 127 0 SHEET 2 AA411 HIS A 193 GLY A 195 -1 O GLY A 195 N TYR A 124 SHEET 3 AA411 THR A 159 PHE A 160 -1 N PHE A 160 O GLY A 194 SHEET 4 AA411 LEU A 166 VAL A 168 -1 O VAL A 168 N THR A 159 SHEET 5 AA411 GLU B 29 PHE B 36 -1 O LYS B 35 N SER A 167 SHEET 6 AA411 ILE B 41 GLY B 45 -1 O ILE B 41 N PHE B 36 SHEET 7 AA411 ALA B 175 GLU B 179 -1 O TYR B 177 N VAL B 42 SHEET 8 AA411 ARG B 142 TYR B 149 -1 N THR B 145 O PHE B 178 SHEET 9 AA411 LYS B 203 ARG B 211 -1 O ALA B 206 N MET B 148 SHEET 10 AA411 HIS B 114 TYR B 118 -1 N TYR B 118 O LYS B 203 SHEET 11 AA411 ALA B 84 PHE B 85 -1 N ALA B 84 O ILE B 115 SHEET 1 AA5 2 GLU A 155 GLY A 156 0 SHEET 2 AA5 2 VAL A 198 LYS A 200 -1 O THR A 199 N GLU A 155 SHEET 1 AA6 2 GLU B 155 GLY B 156 0 SHEET 2 AA6 2 VAL B 198 LYS B 200 -1 O THR B 199 N GLU B 155 LINK ND1 HIS A 18 CD CD A 305 1555 1555 2.66 LINK O THR A 80 K K A 311 1555 1555 2.68 LINK O SER A 82 K K A 311 1555 1555 2.63 LINK OE1 GLU A 119 CD CD A 306 1555 1555 2.69 LINK OE2 GLU A 119 CD CD A 306 1555 1555 2.68 LINK NE2 HIS A 127 CD CD A 301 1555 1555 2.51 LINK OD1 ASP A 129 CD CD A 301 1555 1555 2.34 LINK NE2 HIS A 134 CD A CD A 309 1555 1555 2.63 LINK NE2 HIS A 134 CD B CD A 309 1555 1555 2.64 LINK OE1 GLU A 154 CD CD A 308 1555 1555 2.58 LINK OE2 GLU A 154 CD CD A 308 1555 1555 2.61 LINK NE2 HIS A 193 CD CD A 301 1555 1555 2.39 LINK ND1 HIS B 18 CD CD B 302 1555 1555 2.67 LINK NE2 HIS B 114 CD CD B 303 1555 1555 2.62 LINK NE2 HIS B 127 CD CD B 301 1555 1555 2.42 LINK OD1 ASP B 129 CD CD B 301 1555 1555 2.28 LINK NE2 HIS B 134 CD A CD B 305 1555 1555 2.60 LINK NE2 HIS B 193 CD CD B 301 1555 1555 2.49 LINK CD CD A 301 O5 AKG A 310 1555 1555 2.37 LINK CD CD A 301 O2 AKG A 310 1555 1555 2.30 LINK CD CD A 304 O HOH A 432 1555 1555 2.70 LINK CD CD A 305 O HOH A 414 1555 1555 2.68 LINK CD CD A 305 O HOH A 550 1555 1555 2.68 LINK CD A CD A 309 O HOH A 574 1555 1555 2.69 LINK K K A 311 O HOH A 425 1555 1555 3.23 LINK K K A 311 O HOH A 551 1555 1555 2.12 LINK K K A 311 O HOH A 576 1555 1555 2.55 LINK CD CD B 301 O1 AKG B 306 1555 1555 2.41 LINK CD CD B 301 O5 AKG B 306 1555 1555 2.44 LINK CD CD B 302 O HOH B 417 1555 1555 2.67 LINK CD CD B 302 O HOH B 535 1555 1555 2.68 LINK OD1 ASP B 50 CD CD A 306 1555 3465 2.59 LINK OD2 ASP B 50 CD CD A 306 1555 3465 2.62 LINK OE1 GLU B 51 CD CD A 308 1555 3465 2.52 LINK OE2 GLU B 51 CD CD A 308 1555 3465 2.63 LINK OD2 ASP B 54 CD CD A 306 1555 3465 2.46 LINK CD CD A 304 O HOH B 415 1555 1556 2.56 LINK CD A CD A 309 O HOH B 427 1555 3566 2.68 CISPEP 1 GLU A 38 PRO A 39 0 -3.04 CISPEP 2 GLU B 38 PRO B 39 0 -2.17 SITE 1 AC1 4 HIS A 127 ASP A 129 HIS A 193 AKG A 310 SITE 1 AC2 2 GLU A 90 HOH A 532 SITE 1 AC3 2 GLU A 51 HOH A 403 SITE 1 AC4 5 HOH A 432 HIS B 109 ARG B 212 HOH B 415 SITE 2 AC4 5 HOH B 569 SITE 1 AC5 5 HIS A 18 HOH A 414 HOH A 550 HOH A 565 SITE 2 AC5 5 HOH A 586 SITE 1 AC6 4 GLU A 119 GLY A 201 ASP B 50 ASP B 54 SITE 1 AC7 1 ASP A 121 SITE 1 AC8 2 GLU A 154 GLU B 51 SITE 1 AC9 4 HIS A 134 HOH A 574 GLU B 133 HOH B 427 SITE 1 AD1 11 TYR A 118 HIS A 127 ASP A 129 THR A 159 SITE 2 AD1 11 HIS A 193 LYS A 203 ILE A 205 THR A 207 SITE 3 AD1 11 TRP A 209 CD A 301 HOH A 437 SITE 1 AD2 5 THR A 80 SER A 82 HIS A 114 HOH A 551 SITE 2 AD2 5 HOH A 576 SITE 1 AD3 7 SER A 49 ASP A 50 GLU A 51 ASP A 54 SITE 2 AD3 7 HOH A 407 HOH A 419 HOH A 561 SITE 1 AD4 4 HIS B 127 ASP B 129 HIS B 193 AKG B 306 SITE 1 AD5 5 HIS B 18 HOH B 417 HOH B 509 HOH B 535 SITE 2 AD5 5 HOH B 572 SITE 1 AD6 5 GLY B 83 HIS B 114 HOH B 566 HOH B 594 SITE 2 AD6 5 HOH B 608 SITE 1 AD7 3 GLU B 119 GLU B 202 HOH B 432 SITE 1 AD8 5 GLU A 133 HOH A 409 HIS B 134 HOH B 574 SITE 2 AD8 5 HOH B 606 SITE 1 AD9 10 TYR B 118 HIS B 127 ASP B 129 THR B 159 SITE 2 AD9 10 HIS B 193 LYS B 203 ILE B 205 THR B 207 SITE 3 AD9 10 TRP B 209 CD B 301 SITE 1 AE1 7 MET A 174 GLN B 31 GLY B 45 ASN B 46 SITE 2 AE1 7 MET B 174 HOH B 448 HOH B 466 CRYST1 90.336 90.336 51.423 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011070 0.006391 0.000000 0.00000 SCALE2 0.000000 0.012782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019447 0.00000 MASTER 505 0 19 10 35 0 31 6 0 0 0 34 END