HEADER HYDROLASE 19-JAN-16 5HOP TITLE 1.65 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF LMO0182 (RESIDUES 1-245) TITLE 2 FROM LISTERIA MONOCYTOGENES EGD-E COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO0182 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN SOURCE 3 ATCC BAA-679 / EGD-E); SOURCE 4 ORGANISM_TAXID: 169963; SOURCE 5 STRAIN: ATCC BAA-679 / EGD-E; SOURCE 6 GENE: LMO0182; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS LMO0182, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 2 CSGID, LISTERIA MONOCYTOGENES EGD-E, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,S.H.LIGHT,G.MINASOV,S.GRIMSHAW,K.KWON,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 1 01-FEB-17 5HOP 0 JRNL AUTH S.H.LIGHT,L.A.CAHOON,K.V.MAHASENAN,M.LEE,B.BOGGESS, JRNL AUTH 2 A.S.HALAVATY,S.MOBASHERY,N.E.FREITAG,W.F.ANDERSON JRNL TITL TRANSFERASE VERSUS HYDROLASE: THE ROLE OF CONFORMATIONAL JRNL TITL 2 FLEXIBILITY IN REACTION SPECIFICITY. JRNL REF STRUCTURE 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28089449 JRNL DOI 10.1016/J.STR.2016.12.007 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3307 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 246 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 612 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 2.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4074 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3913 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5540 ; 1.548 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9061 ; 0.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 4.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;34.149 ;25.568 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;10.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ; 4.354 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4626 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 886 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 239 B 1 239 16002 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7048 21.0241 16.1003 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.0964 REMARK 3 T33: 0.0229 T12: 0.0238 REMARK 3 T13: -0.0227 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.1598 L22: 3.1610 REMARK 3 L33: 0.3432 L12: -0.8781 REMARK 3 L13: -0.0930 L23: -0.1642 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.0383 S13: -0.1147 REMARK 3 S21: -0.3427 S22: -0.0587 S23: 0.2441 REMARK 3 S31: 0.0160 S32: -0.0045 S33: -0.0236 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8690 40.0596 21.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.0852 REMARK 3 T33: 0.0096 T12: 0.0130 REMARK 3 T13: 0.0110 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.9558 L22: 1.7700 REMARK 3 L33: 1.3035 L12: -0.6389 REMARK 3 L13: -0.2022 L23: 0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0187 S13: 0.0558 REMARK 3 S21: -0.0893 S22: -0.0516 S23: 0.0123 REMARK 3 S31: -0.0850 S32: 0.0464 S33: 0.0311 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9000 34.8462 34.9435 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1214 REMARK 3 T33: 0.0315 T12: 0.0330 REMARK 3 T13: 0.0467 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.7309 L22: 4.0418 REMARK 3 L33: 2.4810 L12: -0.1386 REMARK 3 L13: 0.0926 L23: -0.3158 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: -0.1342 S13: -0.0265 REMARK 3 S21: 0.3442 S22: 0.0743 S23: 0.3307 REMARK 3 S31: -0.1013 S32: -0.0510 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9129 24.2985 35.6677 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1166 REMARK 3 T33: 0.0589 T12: 0.0422 REMARK 3 T13: 0.0836 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 5.7084 L22: 5.2823 REMARK 3 L33: 5.3167 L12: 0.2519 REMARK 3 L13: 0.6566 L23: 0.2547 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: -0.2082 S13: -0.3342 REMARK 3 S21: 0.3419 S22: 0.0182 S23: 0.0886 REMARK 3 S31: 0.2001 S32: 0.2106 S33: 0.0774 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0502 1.3635 40.2981 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.1245 REMARK 3 T33: 0.0251 T12: 0.0255 REMARK 3 T13: -0.0122 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 3.1398 L22: 1.1704 REMARK 3 L33: 0.4010 L12: -0.8333 REMARK 3 L13: -0.1934 L23: -0.0778 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: -0.3446 S13: 0.2545 REMARK 3 S21: 0.0476 S22: 0.0848 S23: -0.1191 REMARK 3 S31: -0.0004 S32: 0.0144 S33: -0.0280 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 118 B 163 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8074 2.2136 36.4908 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.1015 REMARK 3 T33: 0.0238 T12: 0.0207 REMARK 3 T13: 0.0098 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.5023 L22: 0.9158 REMARK 3 L33: 1.7212 L12: -0.2157 REMARK 3 L13: -0.1635 L23: -0.2550 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: -0.1031 S13: 0.0549 REMARK 3 S21: 0.0365 S22: 0.0293 S23: 0.1184 REMARK 3 S31: 0.0521 S32: -0.0969 S33: 0.0337 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 164 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5784 9.7206 22.5054 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.1177 REMARK 3 T33: 0.0247 T12: 0.0292 REMARK 3 T13: 0.0065 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 4.2211 L22: 1.5545 REMARK 3 L33: 1.7545 L12: -0.3844 REMARK 3 L13: -0.5057 L23: -0.4045 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: 0.3028 S13: 0.2828 REMARK 3 S21: -0.1442 S22: -0.0386 S23: -0.0717 REMARK 3 S31: -0.0187 S32: -0.0905 S33: -0.0173 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 218 B 239 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6933 6.8211 20.5028 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.1662 REMARK 3 T33: 0.0633 T12: 0.0455 REMARK 3 T13: 0.0423 T23: 0.0854 REMARK 3 L TENSOR REMARK 3 L11: 4.9777 L22: 6.5240 REMARK 3 L33: 5.3917 L12: 0.4043 REMARK 3 L13: 0.2510 L23: 1.1315 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.2940 S13: 0.1779 REMARK 3 S21: -0.2285 S22: -0.0873 S23: -0.3840 REMARK 3 S31: 0.0716 S32: 0.2376 S33: 0.0708 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65420 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 15.2 MG/ML IN 10 MM TRIS-HCL REMARK 280 PH 8.3 0.5 MM TCEP CRYSTALLIZATION: THE PACT SUITE C2(#26): 0.1 REMARK 280 M PCB BUFFER PH 5.0 25% (W/V) PEG1500 CRYO: CRYSTALLIZATION REMARK 280 CONDITION, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.51400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.77100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.25700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 240 REMARK 465 VAL A 241 REMARK 465 THR A 242 REMARK 465 ALA A 243 REMARK 465 HIS A 244 REMARK 465 ILE A 245 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 240 REMARK 465 VAL B 241 REMARK 465 THR B 242 REMARK 465 ALA B 243 REMARK 465 HIS B 244 REMARK 465 ILE B 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 575 O HOH A 589 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 213 N - CA - CB ANGL. DEV. = 13.9 DEGREES REMARK 500 MSE B 213 CA - CB - CG ANGL. DEV. = 10.6 DEGREES REMARK 500 MSE B 213 CG - SE - CE ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 69.77 -114.11 REMARK 500 LYS A 106 77.70 -154.99 REMARK 500 VAL A 147 -62.60 -92.06 REMARK 500 SER A 202 31.13 73.10 REMARK 500 LYS B 18 70.62 -114.26 REMARK 500 LYS B 106 77.93 -155.41 REMARK 500 VAL B 147 -62.14 -92.22 REMARK 500 SER B 202 30.45 73.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 699 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 700 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B 711 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 6.57 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP95183 RELATED DB: TARGETTRACK DBREF 5HOP A 2 245 UNP Q8YAE8 Q8YAE8_LISMO 2 245 DBREF 5HOP B 2 245 UNP Q8YAE8 Q8YAE8_LISMO 2 245 SEQADV 5HOP SER A -2 UNP Q8YAE8 EXPRESSION TAG SEQADV 5HOP ASN A -1 UNP Q8YAE8 EXPRESSION TAG SEQADV 5HOP ALA A 0 UNP Q8YAE8 EXPRESSION TAG SEQADV 5HOP MSE A 1 UNP Q8YAE8 EXPRESSION TAG SEQADV 5HOP SER B -2 UNP Q8YAE8 EXPRESSION TAG SEQADV 5HOP ASN B -1 UNP Q8YAE8 EXPRESSION TAG SEQADV 5HOP ALA B 0 UNP Q8YAE8 EXPRESSION TAG SEQADV 5HOP MSE B 1 UNP Q8YAE8 EXPRESSION TAG SEQRES 1 A 248 SER ASN ALA MSE SER LYS PHE THR LYS LEU MSE GLN GLY SEQRES 2 A 248 TYR LEU HIS LEU ILE GLU GLY LYS ASN GLU LYS ILE LYS SEQRES 3 A 248 PRO ILE LEU LEU GLU THR LYS PRO ASN PHE THR THR ASP SEQRES 4 A 248 SER VAL LEU GLU THR ALA SER TRP LEU TRP LEU SER SER SEQRES 5 A 248 LYS ILE ASN HIS TYR ASP ARG GLU GLU VAL GLU PRO VAL SEQRES 6 A 248 ILE ALA PHE LEU VAL GLU ASN TRP ASN ARG PRO GLU LYS SEQRES 7 A 248 SER ILE TRP GLY SER ALA GLU ASN ASP ILE TYR LEU ALA SEQRES 8 A 248 THR ILE SER SER VAL TYR SER ALA LEU LEU ASP VAL LYS SEQRES 9 A 248 ASN THR PHE PRO LYS PRO GLU LEU GLN GLN THR ILE THR SEQRES 10 A 248 ILE ILE ARG ASP TYR CYS PHE ASP ASN LEU LEU LYS GLY SEQRES 11 A 248 ASP SER ILE LEU THR GLY PHE ASN THR ARG LYS VAL SER SEQRES 12 A 248 THR ASP GLN LEU LEU SER VAL LEU PRO PHE GLY LEU PHE SEQRES 13 A 248 SER PRO GLU ASP LEU VAL MSE VAL ALA ALA VAL GLY LYS SEQRES 14 A 248 MSE GLU GLN GLN LEU VAL GLN ASP ASP GLY VAL LEU PRO SEQRES 15 A 248 TYR SER GLY ALA PRO ARG VAL ASN SER PHE ALA THR ALA SEQRES 16 A 248 LEU MSE ALA LEU TYR PHE LEU GLU LYS SER ASP GLN ASP SEQRES 17 A 248 LYS ALA LEU HIS TYR LEU ASN MSE ALA MSE LYS MSE GLU SEQRES 18 A 248 ASP ASN ASP GLU LEU GLY ALA ILE PHE ILE GLU ILE ASN SEQRES 19 A 248 GLN ALA PHE ARG ALA MSE GLU SER GLU VAL THR ALA HIS SEQRES 20 A 248 ILE SEQRES 1 B 248 SER ASN ALA MSE SER LYS PHE THR LYS LEU MSE GLN GLY SEQRES 2 B 248 TYR LEU HIS LEU ILE GLU GLY LYS ASN GLU LYS ILE LYS SEQRES 3 B 248 PRO ILE LEU LEU GLU THR LYS PRO ASN PHE THR THR ASP SEQRES 4 B 248 SER VAL LEU GLU THR ALA SER TRP LEU TRP LEU SER SER SEQRES 5 B 248 LYS ILE ASN HIS TYR ASP ARG GLU GLU VAL GLU PRO VAL SEQRES 6 B 248 ILE ALA PHE LEU VAL GLU ASN TRP ASN ARG PRO GLU LYS SEQRES 7 B 248 SER ILE TRP GLY SER ALA GLU ASN ASP ILE TYR LEU ALA SEQRES 8 B 248 THR ILE SER SER VAL TYR SER ALA LEU LEU ASP VAL LYS SEQRES 9 B 248 ASN THR PHE PRO LYS PRO GLU LEU GLN GLN THR ILE THR SEQRES 10 B 248 ILE ILE ARG ASP TYR CYS PHE ASP ASN LEU LEU LYS GLY SEQRES 11 B 248 ASP SER ILE LEU THR GLY PHE ASN THR ARG LYS VAL SER SEQRES 12 B 248 THR ASP GLN LEU LEU SER VAL LEU PRO PHE GLY LEU PHE SEQRES 13 B 248 SER PRO GLU ASP LEU VAL MSE VAL ALA ALA VAL GLY LYS SEQRES 14 B 248 MSE GLU GLN GLN LEU VAL GLN ASP ASP GLY VAL LEU PRO SEQRES 15 B 248 TYR SER GLY ALA PRO ARG VAL ASN SER PHE ALA THR ALA SEQRES 16 B 248 LEU MSE ALA LEU TYR PHE LEU GLU LYS SER ASP GLN ASP SEQRES 17 B 248 LYS ALA LEU HIS TYR LEU ASN MSE ALA MSE LYS MSE GLU SEQRES 18 B 248 ASP ASN ASP GLU LEU GLY ALA ILE PHE ILE GLU ILE ASN SEQRES 19 B 248 GLN ALA PHE ARG ALA MSE GLU SER GLU VAL THR ALA HIS SEQRES 20 B 248 ILE MODRES 5HOP MSE A 8 MET MODIFIED RESIDUE MODRES 5HOP MSE A 160 MET MODIFIED RESIDUE MODRES 5HOP MSE A 167 MET MODIFIED RESIDUE MODRES 5HOP MSE A 194 MET MODIFIED RESIDUE MODRES 5HOP MSE A 213 MET MODIFIED RESIDUE MODRES 5HOP MSE A 215 MET MODIFIED RESIDUE MODRES 5HOP MSE A 217 MET MODIFIED RESIDUE MODRES 5HOP MSE A 237 MET MODIFIED RESIDUE MODRES 5HOP MSE B 8 MET MODIFIED RESIDUE MODRES 5HOP MSE B 160 MET MODIFIED RESIDUE MODRES 5HOP MSE B 167 MET MODIFIED RESIDUE MODRES 5HOP MSE B 194 MET MODIFIED RESIDUE MODRES 5HOP MSE B 213 MET MODIFIED RESIDUE MODRES 5HOP MSE B 215 MET MODIFIED RESIDUE MODRES 5HOP MSE B 217 MET MODIFIED RESIDUE MODRES 5HOP MSE B 237 MET MODIFIED RESIDUE HET MSE A 1 16 HET MSE A 8 8 HET MSE A 160 8 HET MSE A 167 8 HET MSE A 194 16 HET MSE A 213 16 HET MSE A 215 8 HET MSE A 217 16 HET MSE A 237 8 HET MSE B 1 16 HET MSE B 8 8 HET MSE B 160 8 HET MSE B 167 8 HET MSE B 194 16 HET MSE B 213 16 HET MSE B 215 8 HET MSE B 217 16 HET MSE B 237 16 HET ACT A 301 4 HET ACT B 301 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *612(H2 O) HELIX 1 AA1 MSE A 1 GLU A 16 1 16 HELIX 2 AA2 LYS A 18 THR A 29 1 12 HELIX 3 AA3 SER A 37 ILE A 51 1 15 HELIX 4 AA4 ASP A 55 TRP A 70 1 16 HELIX 5 AA5 TYR A 86 PHE A 104 1 19 HELIX 6 AA6 LYS A 106 GLU A 108 5 3 HELIX 7 AA7 LEU A 109 LEU A 124 1 16 HELIX 8 AA8 SER A 140 VAL A 147 5 8 HELIX 9 AA9 ASP A 157 LEU A 171 1 15 HELIX 10 AB1 ASN A 187 SER A 202 1 16 HELIX 11 AB2 ASP A 203 MSE A 217 1 15 HELIX 12 AB3 ASP A 221 SER A 239 1 19 HELIX 13 AB4 SER B 2 GLU B 16 1 15 HELIX 14 AB5 LYS B 18 THR B 29 1 12 HELIX 15 AB6 SER B 37 ILE B 51 1 15 HELIX 16 AB7 ASP B 55 TRP B 70 1 16 HELIX 17 AB8 TYR B 86 PHE B 104 1 19 HELIX 18 AB9 LYS B 106 GLU B 108 5 3 HELIX 19 AC1 LEU B 109 LEU B 124 1 16 HELIX 20 AC2 SER B 140 VAL B 147 5 8 HELIX 21 AC3 ASP B 157 LEU B 171 1 15 HELIX 22 AC4 ASN B 187 SER B 202 1 16 HELIX 23 AC5 ASP B 203 MSE B 217 1 15 HELIX 24 AC6 ASP B 221 SER B 239 1 19 SHEET 1 AA1 2 LEU A 125 LYS A 126 0 SHEET 2 AA1 2 SER A 129 ILE A 130 -1 O SER A 129 N LYS A 126 SHEET 1 AA2 2 VAL A 172 GLN A 173 0 SHEET 2 AA2 2 GLY A 176 VAL A 177 -1 O GLY A 176 N GLN A 173 SHEET 1 AA3 2 LEU B 125 LYS B 126 0 SHEET 2 AA3 2 SER B 129 ILE B 130 -1 O SER B 129 N LYS B 126 SHEET 1 AA4 2 VAL B 172 GLN B 173 0 SHEET 2 AA4 2 GLY B 176 VAL B 177 -1 O GLY B 176 N GLN B 173 LINK C AMSE A 1 N SER A 2 1555 1555 1.33 LINK C BMSE A 1 N SER A 2 1555 1555 1.33 LINK C LEU A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N GLN A 9 1555 1555 1.34 LINK C VAL A 159 N MSE A 160 1555 1555 1.35 LINK C MSE A 160 N VAL A 161 1555 1555 1.33 LINK C ALYS A 166 N MSE A 167 1555 1555 1.32 LINK C BLYS A 166 N MSE A 167 1555 1555 1.32 LINK C MSE A 167 N GLU A 168 1555 1555 1.32 LINK C LEU A 193 N AMSE A 194 1555 1555 1.34 LINK C LEU A 193 N BMSE A 194 1555 1555 1.33 LINK C AMSE A 194 N ALA A 195 1555 1555 1.33 LINK C BMSE A 194 N ALA A 195 1555 1555 1.33 LINK C ASN A 212 N AMSE A 213 1555 1555 1.33 LINK C ASN A 212 N BMSE A 213 1555 1555 1.33 LINK C AMSE A 213 N ALA A 214 1555 1555 1.33 LINK C BMSE A 213 N ALA A 214 1555 1555 1.32 LINK C ALA A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N LYS A 216 1555 1555 1.32 LINK C LYS A 216 N AMSE A 217 1555 1555 1.34 LINK C LYS A 216 N BMSE A 217 1555 1555 1.33 LINK C AMSE A 217 N GLU A 218 1555 1555 1.33 LINK C BMSE A 217 N GLU A 218 1555 1555 1.33 LINK C ALA A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N GLU A 238 1555 1555 1.33 LINK C AMSE B 1 N SER B 2 1555 1555 1.33 LINK C BMSE B 1 N SER B 2 1555 1555 1.33 LINK C LEU B 7 N MSE B 8 1555 1555 1.32 LINK C MSE B 8 N GLN B 9 1555 1555 1.34 LINK C VAL B 159 N MSE B 160 1555 1555 1.35 LINK C MSE B 160 N VAL B 161 1555 1555 1.33 LINK C LYS B 166 N MSE B 167 1555 1555 1.32 LINK C MSE B 167 N GLU B 168 1555 1555 1.33 LINK C LEU B 193 N AMSE B 194 1555 1555 1.34 LINK C LEU B 193 N BMSE B 194 1555 1555 1.32 LINK C AMSE B 194 N ALA B 195 1555 1555 1.33 LINK C BMSE B 194 N ALA B 195 1555 1555 1.33 LINK C ASN B 212 N AMSE B 213 1555 1555 1.34 LINK C ASN B 212 N BMSE B 213 1555 1555 1.33 LINK C AMSE B 213 N ALA B 214 1555 1555 1.33 LINK C BMSE B 213 N ALA B 214 1555 1555 1.33 LINK C ALA B 214 N MSE B 215 1555 1555 1.33 LINK C MSE B 215 N LYS B 216 1555 1555 1.32 LINK C LYS B 216 N AMSE B 217 1555 1555 1.34 LINK C LYS B 216 N BMSE B 217 1555 1555 1.33 LINK C AMSE B 217 N GLU B 218 1555 1555 1.33 LINK C BMSE B 217 N GLU B 218 1555 1555 1.32 LINK C ALA B 236 N AMSE B 237 1555 1555 1.33 LINK C ALA B 236 N BMSE B 237 1555 1555 1.33 LINK C AMSE B 237 N GLU B 238 1555 1555 1.33 LINK C BMSE B 237 N GLU B 238 1555 1555 1.33 CISPEP 1 PHE A 104 PRO A 105 0 -3.23 CISPEP 2 LEU A 148 PRO A 149 0 6.59 CISPEP 3 PHE B 104 PRO B 105 0 -4.99 CISPEP 4 LEU B 148 PRO B 149 0 6.81 SITE 1 AC1 4 ILE A 77 ASN A 187 ASP A 221 HOH A 576 SITE 1 AC2 4 ILE B 77 ASN B 187 ASP B 221 HOH B 520 CRYST1 110.141 110.141 45.028 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022208 0.00000 MASTER 496 0 20 24 8 0 2 6 0 0 0 40 END