HEADER OXIDOREDUCTASE 14-JAN-16 5HL4 TITLE ACOUSTIC INJECTORS FOR DROP-ON-DEMAND SERIAL FEMTOSECOND TITLE 2 CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING-HYDROXYLATING DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI 1021; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: SMA0751; SOURCE 7 EXPRESSION_SYSTEM: SINORHIZOBIUM MELILOTI 1021; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 266834 KEYWDS RING-HYDROXYLATING DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.ROESSLER,R.AGARWAL,M.ALLAIRE,R.ALONSO-MORI,B.ANDI,J.F.R.BACHEGA, AUTHOR 2 M.BOMMER,A.S.BREWSTER,M.C.BROWNE,R.CHATTERJEE,E.CHO,A.E.COHEN, AUTHOR 3 M.COWAN,S.DATWANI,V.L.DAVIDSON,J.DEFEVER,B.EATON,R.ELLSON,Y.FENG, AUTHOR 4 L.P.GHISLAIN,J.M.GLOWNIA,G.HAN,J.HATTNE,J.HELLMICH,A.HEROUX, AUTHOR 5 M.IBRAHIM,J.KERN,A.KUCZEWSKI,H.T.LEMKE,P.LIU,L.MAJLOF, AUTHOR 6 W.M.MCCLINTOCK,S.MYERS,S.NELSEN,J.OLECHNO,A.M.ORVILLE,N.K.SAUTER, AUTHOR 7 A.S.SOARES,M.S.SOLTIS,H.SONG,R.G.STEARNS,R.TRAN,Y.TSAI, AUTHOR 8 M.UERVIROJNANGKOORN,C.M.WILMOT,V.YACHANDRA,J.YANO,E.T.YUKL,D.ZHU, AUTHOR 9 A.ZOUNI REVDAT 5 14-NOV-18 5HL4 1 SOURCE REMARK REVDAT 4 24-JAN-18 5HL4 1 REMARK REVDAT 3 20-APR-16 5HL4 1 JRNL REVDAT 2 06-APR-16 5HL4 1 JRNL REVDAT 1 27-JAN-16 5HL4 0 JRNL AUTH C.G.ROESSLER,R.AGARWAL,M.ALLAIRE,R.ALONSO-MORI,B.ANDI, JRNL AUTH 2 J.F.BACHEGA,M.BOMMER,A.S.BREWSTER,M.C.BROWNE,R.CHATTERJEE, JRNL AUTH 3 E.CHO,A.E.COHEN,M.COWAN,S.DATWANI,V.L.DAVIDSON,J.DEFEVER, JRNL AUTH 4 B.EATON,R.ELLSON,Y.FENG,L.P.GHISLAIN,J.M.GLOWNIA,G.HAN, JRNL AUTH 5 J.HATTNE,J.HELLMICH,A.HEROUX,M.IBRAHIM,J.KERN,A.KUCZEWSKI, JRNL AUTH 6 H.T.LEMKE,P.LIU,L.MAJLOF,W.M.MCCLINTOCK,S.MYERS,S.NELSEN, JRNL AUTH 7 J.OLECHNO,A.M.ORVILLE,N.K.SAUTER,A.S.SOARES,S.M.SOLTIS, JRNL AUTH 8 H.SONG,R.G.STEARNS,R.TRAN,Y.TSAI,M.UERVIROJNANGKOORN, JRNL AUTH 9 C.M.WILMOT,V.YACHANDRA,J.YANO,E.T.YUKL,D.ZHU,A.ZOUNI JRNL TITL ACOUSTIC INJECTORS FOR DROP-ON-DEMAND SERIAL FEMTOSECOND JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF STRUCTURE V. 24 631 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26996959 JRNL DOI 10.1016/J.STR.2016.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.4260 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.5110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.311 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.033 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.850 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.756 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3258 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3026 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4440 ; 1.766 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6951 ; 0.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 8.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;37.310 ;23.312 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;19.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.033 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3678 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 781 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1586 ; 1.576 ; 2.531 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1585 ; 1.575 ; 2.530 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1979 ; 2.560 ; 3.791 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1980 ; 2.559 ; 3.793 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 1.277 ; 2.537 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1673 ; 1.277 ; 2.537 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2460 ; 2.089 ; 3.763 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3979 ; 5.333 ;19.650 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3966 ; 5.338 ;19.671 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : XPP REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE XPP REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.36 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD XPP REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.XFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25584 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 90.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 53.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN WITH 25 MM HEXAAMINE REMARK 280 COBALT CHLORIDE CRYSTALLIZED BY HANGING DROP WITH PRECIPITANT REMARK 280 7.5% PEG 3350, 10% GLYCEROL, AND 0.1M HEPES PH 7.0., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.04350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.04350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.04350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 90.04350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.04350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.04350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO NCO A 503 LIES ON A SPECIAL POSITION. REMARK 375 N4 NCO A 503 LIES ON A SPECIAL POSITION. REMARK 375 N6 NCO A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 226 REMARK 465 ALA A 227 REMARK 465 ASP A 228 REMARK 465 GLY A 229 REMARK 465 ARG A 407 REMARK 465 GLN A 408 REMARK 465 VAL A 409 REMARK 465 ALA A 410 REMARK 465 ALA A 411 REMARK 465 GLU A 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 225 CG1 CG2 REMARK 470 PRO A 406 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 315 O HOH A 601 2.08 REMARK 500 O LEU A 53 NH2 ARG A 73 2.11 REMARK 500 OH TYR A 169 O GLN A 250 2.13 REMARK 500 OG1 THR A 356 O HOH A 602 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 283 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 PRO A 406 C - N - CA ANGL. DEV. = 20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 39 -58.32 -122.14 REMARK 500 ALA A 47 -79.20 -107.32 REMARK 500 LEU A 53 52.08 -116.52 REMARK 500 ASP A 76 7.61 -55.82 REMARK 500 HIS A 88 -78.82 -75.52 REMARK 500 ILE A 93 -62.61 -92.53 REMARK 500 LYS A 95 -93.42 -79.86 REMARK 500 ALA A 96 147.37 -27.45 REMARK 500 GLN A 110 8.25 57.78 REMARK 500 ASP A 128 9.15 -69.80 REMARK 500 LEU A 144 75.10 -117.74 REMARK 500 PHE A 182 149.03 -175.12 REMARK 500 TYR A 203 -68.50 175.76 REMARK 500 CYS A 205 -35.54 -32.68 REMARK 500 ALA A 211 -72.53 -82.86 REMARK 500 PRO A 217 160.84 -48.70 REMARK 500 ASP A 219 111.78 -37.07 REMARK 500 SER A 232 -176.22 -61.45 REMARK 500 ALA A 249 -21.55 -140.37 REMARK 500 ALA A 262 117.70 -174.21 REMARK 500 GLU A 268 104.53 -22.20 REMARK 500 LYS A 269 -31.35 104.49 REMARK 500 PRO A 290 -177.98 -68.12 REMARK 500 ASP A 292 39.04 -78.58 REMARK 500 PRO A 374 -4.23 -57.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 201 CYS A 202 146.28 REMARK 500 CYS A 202 TYR A 203 -149.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 731 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 9.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 FES A 501 S1 96.6 REMARK 620 3 FES A 501 S2 126.0 102.0 REMARK 620 4 CYS A 106 SG 104.9 102.4 119.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 ND1 REMARK 620 2 FES A 501 S1 107.1 REMARK 620 3 FES A 501 S2 109.0 100.9 REMARK 620 4 HIS A 109 ND1 96.7 133.2 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 209 NE2 REMARK 620 2 ASP A 360 OD1 67.2 REMARK 620 3 HOH A 696 O 76.8 124.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F81 RELATED DB: PDB REMARK 900 STRUCTURE SOLVED USING THE SAME ACOUSTIC INJECTOR. REMARK 900 RELATED ID: 5F80 RELATED DB: PDB REMARK 900 STRUCTURE SOLVED USING THE SAME ACOUSTIC INJECTOR. DBREF 5HL4 A 1 412 UNP Q92ZP9 Q92ZP9_RHIME 1 412 SEQRES 1 A 412 MET THR ALA ASN PRO THR SER ILE HIS GLN ARG LEU ASP SEQRES 2 A 412 ARG ARG LEU SER GLY PHE SER LEU GLU GLN PRO PHE TYR SEQRES 3 A 412 THR SER PRO GLU VAL TYR ALA LEU ASP LEU GLN HIS ILE SEQRES 4 A 412 PHE TYR LYS GLN TRP LEU TYR ALA VAL PRO VAL CYS GLN SEQRES 5 A 412 LEU ALA LYS ALA GLY SER TYR THR THR LEU ARG VAL GLY SEQRES 6 A 412 ALA TYR GLU VAL VAL ILE VAL ARG SER ARG ASP GLY GLU SEQRES 7 A 412 VAL ARG ALA PHE HIS ASN SER CYS ARG HIS ARG GLY SER SEQRES 8 A 412 LEU ILE CYS LYS ALA ARG GLN GLY GLN VAL ALA LYS LEU SEQRES 9 A 412 VAL CYS PRO TYR HIS GLN TRP THR TYR GLU LEU ASP GLY SEQRES 10 A 412 LYS LEU ILE TRP ALA ASN ASP MET GLY PRO ASP PHE ASP SEQRES 11 A 412 ALA SER LYS TYR GLY LEU LYS PRO VAL ASN LEU ARG ASN SEQRES 12 A 412 LEU ASP GLY LEU ILE TYR ILE CYS LEU SER ASP THR PRO SEQRES 13 A 412 PRO ASP PHE GLN THR PHE ALA GLN LEU ALA ARG PRO TYR SEQRES 14 A 412 LEU GLU VAL HIS ASP LEU LYS ASP ALA LYS VAL ALA PHE SEQRES 15 A 412 THR SER THR ILE ILE GLU LYS GLY ASN TRP LYS LEU VAL SEQRES 16 A 412 TRP GLU ASN ASN ARG GLU CYS TYR HIS CYS SER SER ASN SEQRES 17 A 412 HIS PRO ALA LEU CYS ARG SER PHE PRO LEU ASP PRO GLU SEQRES 18 A 412 VAL ALA GLY VAL GLN ALA ASP GLY GLY VAL SER LYS LYS SEQRES 19 A 412 LEU GLN ALA HIS PHE ASP ARG CYS GLU ALA ALA GLY THR SEQRES 20 A 412 PRO ALA GLN PHE VAL LEU ALA GLY ASP GLY GLN TYR ARG SEQRES 21 A 412 LEU ALA ARG MET PRO LEU GLN GLU LYS ALA LEU SER TYR SEQRES 22 A 412 THR MET ASP GLY LYS ALA ALA VAL SER ARG HIS LEU GLY SEQRES 23 A 412 ARG VAL ALA PRO PRO ASP ALA GLY THR LEU LEU MET PHE SEQRES 24 A 412 HIS TYR PRO SER THR TRP ASN HIS PHE LEU PRO ASP HIS SEQRES 25 A 412 SER LEU THR PHE ARG VAL MET PRO ILE SER PRO THR GLU SEQRES 26 A 412 THR GLU VAL THR THR THR TRP LEU VAL HIS LYS ASP ALA SEQRES 27 A 412 VAL GLU GLY VAL ASP TYR ASP LEU LYS ARG LEU THR GLU SEQRES 28 A 412 VAL TRP ILE ALA THR ASN ASP GLU ASP ARG GLU ILE VAL SEQRES 29 A 412 GLU THR ASN GLN GLN GLY ILE LEU SER PRO ALA TYR VAL SEQRES 30 A 412 PRO GLY PRO TYR SER PRO GLY GLN GLU SER GLY VAL MET SEQRES 31 A 412 GLN PHE VAL ASP TRP TYR ALA ALA SER LEU GLU ARG ALA SEQRES 32 A 412 LEU ALA PRO ARG GLN VAL ALA ALA GLU HET FES A 501 4 HET FE A 502 1 HET NCO A 503 7 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE FE (III) ION HETNAM NCO COBALT HEXAMMINE(III) FORMUL 2 FES FE2 S2 FORMUL 3 FE FE 3+ FORMUL 4 NCO CO H18 N6 3+ FORMUL 5 HOH *134(H2 O) HELIX 1 AA1 SER A 7 ARG A 14 1 8 HELIX 2 AA2 GLN A 23 SER A 28 1 6 HELIX 3 AA3 SER A 28 ILE A 39 1 12 HELIX 4 AA4 CYS A 51 ALA A 54 5 4 HELIX 5 AA5 PHE A 159 VAL A 172 1 14 HELIX 6 AA6 HIS A 173 LYS A 176 5 4 HELIX 7 AA7 ASN A 191 GLU A 201 1 11 HELIX 8 AA8 TYR A 203 ASN A 208 5 6 HELIX 9 AA9 ALA A 211 PHE A 216 1 6 HELIX 10 AB1 SER A 232 ALA A 245 1 14 HELIX 11 AB2 ASP A 345 LEU A 372 1 28 HELIX 12 AB3 GLU A 386 ALA A 405 1 20 SHEET 1 AA1 7 LEU A 45 PRO A 49 0 SHEET 2 AA1 7 LEU A 147 CYS A 151 -1 O ILE A 148 N VAL A 48 SHEET 3 AA1 7 PRO A 138 LEU A 144 -1 N ARG A 142 O TYR A 149 SHEET 4 AA1 7 VAL A 79 HIS A 83 -1 N ALA A 81 O VAL A 139 SHEET 5 AA1 7 TYR A 67 ARG A 73 -1 N VAL A 70 O PHE A 82 SHEET 6 AA1 7 SER A 58 VAL A 64 -1 N THR A 60 O ILE A 71 SHEET 7 AA1 7 GLN A 98 GLN A 100 -1 O GLY A 99 N TYR A 59 SHEET 1 AA2 3 LEU A 104 VAL A 105 0 SHEET 2 AA2 3 THR A 112 TYR A 113 -1 O TYR A 113 N LEU A 104 SHEET 3 AA2 3 LEU A 119 TRP A 121 -1 O TRP A 121 N THR A 112 SHEET 1 AA3 7 ALA A 178 GLU A 188 0 SHEET 2 AA3 7 GLU A 325 HIS A 335 -1 O TRP A 332 N PHE A 182 SHEET 3 AA3 7 SER A 313 SER A 322 -1 N MET A 319 O GLU A 327 SHEET 4 AA3 7 THR A 304 PHE A 308 -1 N HIS A 307 O LEU A 314 SHEET 5 AA3 7 THR A 295 HIS A 300 -1 N HIS A 300 O THR A 304 SHEET 6 AA3 7 TYR A 259 MET A 264 -1 N MET A 264 O THR A 295 SHEET 7 AA3 7 VAL A 252 LEU A 253 -1 N VAL A 252 O LEU A 261 SSBOND 1 CYS A 202 CYS A 205 1555 1555 2.05 LINK SG CYS A 86 FE2 FES A 501 1555 1555 2.19 LINK ND1 HIS A 88 FE1 FES A 501 1555 1555 2.45 LINK SG CYS A 106 FE2 FES A 501 1555 1555 2.31 LINK ND1 HIS A 109 FE1 FES A 501 1555 1555 1.96 LINK NE2 HIS A 209 FE FE A 502 1555 1555 2.79 LINK OD1 ASP A 360 FE FE A 502 1555 1555 2.11 LINK FE FE A 502 O HOH A 696 1555 1555 2.30 CISPEP 1 ALA A 289 PRO A 290 0 -2.13 CISPEP 2 TYR A 301 PRO A 302 0 6.27 SITE 1 AC1 7 CYS A 86 HIS A 88 ARG A 89 CYS A 106 SITE 2 AC1 7 TYR A 108 HIS A 109 TRP A 111 SITE 1 AC2 4 HIS A 204 HIS A 209 ASP A 360 HOH A 696 SITE 1 AC3 3 LEU A 12 ASP A 13 ARG A 15 CRYST1 98.427 98.427 180.087 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010160 0.005866 0.000000 0.00000 SCALE2 0.000000 0.011732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005553 0.00000 MASTER 466 0 3 12 17 0 4 6 0 0 0 32 END