HEADER HYDROLASE/RNA 13-JAN-16 5HK0 TITLE CRYSTAL STRUCTURE OF M. TUBERCULOSIS MAZF-MT3 (RV1991C) IN COMPLEX TITLE 2 WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDORIBONUCLEASE MAZF6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TOXIN MAZF6,MRNA INTERFERASE MAZF-MT3; COMPND 5 EC: 3.1.27.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*AP*GP*UP*C)-D(P*U)-R(P*CP*CP*UP*UP*UP*C)-3'); COMPND 9 CHAIN: E, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: MAZF6, MAZF-MT3, RV1991C, MTCY39.28; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 11 ORGANISM_TAXID: 1773; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN-ANTITOXIN SYSTEM, MAZF, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.J.YEN,R.G.BRENNAN REVDAT 1 18-JAN-17 5HK0 0 JRNL AUTH T.J.YEN,R.G.BRENNAN JRNL TITL CRYSTAL STRUCTURE OF M. TUBERCULOSIS MAZF-MT3 (RV1991C) IN JRNL TITL 2 COMPLEX WITH RNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1729 - 5.4194 0.91 1423 144 0.2096 0.2340 REMARK 3 2 5.4194 - 4.3042 0.90 1402 148 0.1619 0.1653 REMARK 3 3 4.3042 - 3.7609 0.91 1430 139 0.1726 0.2106 REMARK 3 4 3.7609 - 3.4174 0.90 1387 148 0.1929 0.2564 REMARK 3 5 3.4174 - 3.1726 0.91 1453 140 0.2025 0.2669 REMARK 3 6 3.1726 - 2.9857 0.92 1437 131 0.2272 0.2755 REMARK 3 7 2.9857 - 2.8362 0.90 1387 148 0.2381 0.2843 REMARK 3 8 2.8362 - 2.7128 0.91 1439 138 0.2450 0.3700 REMARK 3 9 2.7128 - 2.6084 0.91 1399 144 0.2577 0.3380 REMARK 3 10 2.6084 - 2.5185 0.91 1428 140 0.2704 0.3393 REMARK 3 11 2.5185 - 2.4397 0.91 1431 134 0.2568 0.3269 REMARK 3 12 2.4397 - 2.3700 0.91 1397 141 0.2798 0.3268 REMARK 3 13 2.3700 - 2.3076 0.91 1437 142 0.2895 0.3936 REMARK 3 14 2.3076 - 2.2513 0.87 1397 154 0.2834 0.3635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3444 REMARK 3 ANGLE : 0.721 4729 REMARK 3 CHIRALITY : 0.027 609 REMARK 3 PLANARITY : 0.004 576 REMARK 3 DIHEDRAL : 14.571 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: B. SUBTILIS MAZF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.90933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.45467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 GLN A 20 REMARK 465 GLY B 14 REMARK 465 PRO B 15 REMARK 465 PRO B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 GLN B 20 REMARK 465 MET C 1 REMARK 465 SER C 17 REMARK 465 GLY C 18 REMARK 465 SER C 19 REMARK 465 GLN C 20 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 ILE D 3 REMARK 465 SER D 4 REMARK 465 GLY D 14 REMARK 465 PRO D 15 REMARK 465 PRO D 16 REMARK 465 SER D 17 REMARK 465 GLY D 18 REMARK 465 SER D 19 REMARK 465 GLN D 20 REMARK 465 PRO D 21 REMARK 465 ALA D 22 REMARK 465 A E -1 REMARK 465 G E 0 REMARK 465 U E 6 REMARK 465 U E 7 REMARK 465 U E 8 REMARK 465 C E 9 REMARK 465 A F -1 REMARK 465 G F 0 REMARK 465 U F 1 REMARK 465 C F 2 REMARK 465 C F 5 REMARK 465 U F 6 REMARK 465 U F 7 REMARK 465 U F 8 REMARK 465 C F 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 221 O HOH D 225 1.89 REMARK 500 O HOH B 228 O HOH D 232 1.92 REMARK 500 O HOH C 213 O HOH C 226 1.93 REMARK 500 O HOH D 236 O HOH D 237 1.95 REMARK 500 O HOH A 206 O HOH A 233 1.97 REMARK 500 O HOH F 101 O HOH F 103 1.99 REMARK 500 O LEU D 54 O HOH D 201 2.05 REMARK 500 NE ARG A 109 O HOH A 201 2.08 REMARK 500 O HOH D 209 O HOH D 213 2.10 REMARK 500 O SER C 38 O HOH C 201 2.11 REMARK 500 OD1 ASP D 33 O HOH D 202 2.12 REMARK 500 O ARG C 110 O HOH C 202 2.12 REMARK 500 OG1 THR A 42 O HOH A 202 2.13 REMARK 500 O HOH C 236 O HOH C 239 2.13 REMARK 500 O HOH B 207 O HOH B 219 2.13 REMARK 500 O HOH C 227 O HOH C 232 2.14 REMARK 500 O HOH B 230 O HOH B 236 2.15 REMARK 500 O HOH B 231 O HOH B 241 2.15 REMARK 500 O HOH B 207 O HOH B 211 2.15 REMARK 500 OP1 DU F 3 O HOH F 101 2.15 REMARK 500 O THR D 87 O HOH D 203 2.15 REMARK 500 O HOH A 212 O HOH A 238 2.15 REMARK 500 O HOH B 204 O HOH B 221 2.17 REMARK 500 NH1 ARG B 92 O HOH B 201 2.19 REMARK 500 N ARG D 24 O HOH D 204 2.19 REMARK 500 OG1 THR D 68 O HOH D 205 2.19 REMARK 500 O HOH A 225 O HOH A 237 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER C 50 O3' C E 5 2564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DU E 3 C5' DU E 3 C4' -0.090 REMARK 500 DU E 3 C3' DU E 3 C2' -0.275 REMARK 500 DU E 3 C2' DU E 3 C1' 0.105 REMARK 500 DU E 3 O4' DU E 3 C1' -0.137 REMARK 500 DU E 3 O3' DU E 3 C3' 0.086 REMARK 500 DU E 3 N1 DU E 3 C2 0.086 REMARK 500 DU E 3 C2 DU E 3 N3 0.083 REMARK 500 DU E 3 C5 DU E 3 C6 0.135 REMARK 500 DU F 3 C5' DU F 3 C4' -0.090 REMARK 500 DU F 3 C3' DU F 3 C2' -0.273 REMARK 500 DU F 3 C2' DU F 3 C1' 0.105 REMARK 500 DU F 3 O4' DU F 3 C1' -0.135 REMARK 500 DU F 3 O3' DU F 3 C3' 0.085 REMARK 500 DU F 3 N1 DU F 3 C2 0.086 REMARK 500 DU F 3 C2 DU F 3 N3 0.084 REMARK 500 DU F 3 C5 DU F 3 C6 0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DU E 3 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 DU E 3 C2 - N3 - C4 ANGL. DEV. = -6.7 DEGREES REMARK 500 DU E 3 N3 - C4 - C5 ANGL. DEV. = 5.4 DEGREES REMARK 500 DU E 3 C5 - C4 - O4 ANGL. DEV. = -5.9 DEGREES REMARK 500 DU F 3 OP1 - P - OP2 ANGL. DEV. = -10.0 DEGREES REMARK 500 DU F 3 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 DU F 3 C2 - N3 - C4 ANGL. DEV. = -6.7 DEGREES REMARK 500 DU F 3 N3 - C4 - C5 ANGL. DEV. = 5.3 DEGREES REMARK 500 DU F 3 C5 - C4 - O4 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 58 -72.49 -39.84 REMARK 500 LEU A 89 76.82 -112.83 REMARK 500 ASP A 91 92.51 -68.42 REMARK 500 VAL A 93 -71.94 -101.82 REMARK 500 ALA B 6 -3.69 70.22 REMARK 500 THR B 90 -108.41 -115.02 REMARK 500 LYS C 23 -159.35 61.82 REMARK 500 ARG C 39 -68.04 155.82 REMARK 500 LEU C 40 -124.36 44.35 REMARK 500 ALA C 41 -11.42 179.07 REMARK 500 THR C 90 -121.93 53.63 REMARK 500 LEU D 40 -144.04 38.31 REMARK 500 ALA D 56 9.94 91.81 REMARK 500 PRO D 58 112.76 -38.01 REMARK 500 THR D 90 -118.16 48.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 238 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH C 239 DISTANCE = 6.06 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HKC RELATED DB: PDB REMARK 900 RELATED ID: 5HK3 RELATED DB: PDB REMARK 900 RELATED ID: 5HJZ RELATED DB: PDB DBREF 5HK0 A 1 114 UNP P9WII3 MAZF6_MYCTU 1 114 DBREF 5HK0 B 1 114 UNP P9WII3 MAZF6_MYCTU 1 114 DBREF 5HK0 C 1 114 UNP P9WII3 MAZF6_MYCTU 1 114 DBREF 5HK0 D 1 114 UNP P9WII3 MAZF6_MYCTU 1 114 DBREF 5HK0 E -1 9 PDB 5HK0 5HK0 -1 9 DBREF 5HK0 F -1 9 PDB 5HK0 5HK0 -1 9 SEQRES 1 A 114 MET VAL ILE SER ARG ALA GLU ILE TYR TRP ALA ASP LEU SEQRES 2 A 114 GLY PRO PRO SER GLY SER GLN PRO ALA LYS ARG ARG PRO SEQRES 3 A 114 VAL LEU VAL ILE GLN SER ASP PRO TYR ASN ALA SER ARG SEQRES 4 A 114 LEU ALA THR VAL ILE ALA ALA VAL ILE THR SER ASN THR SEQRES 5 A 114 ALA LEU ALA ALA MET PRO GLY ASN VAL PHE LEU PRO ALA SEQRES 6 A 114 THR THR THR ARG LEU PRO ARG ASP SER VAL VAL ASN VAL SEQRES 7 A 114 THR ALA ILE VAL THR LEU ASN LYS THR ASP LEU THR ASP SEQRES 8 A 114 ARG VAL GLY GLU VAL PRO ALA SER LEU MET HIS GLU VAL SEQRES 9 A 114 ASP ARG GLY LEU ARG ARG VAL LEU ASP LEU SEQRES 1 B 114 MET VAL ILE SER ARG ALA GLU ILE TYR TRP ALA ASP LEU SEQRES 2 B 114 GLY PRO PRO SER GLY SER GLN PRO ALA LYS ARG ARG PRO SEQRES 3 B 114 VAL LEU VAL ILE GLN SER ASP PRO TYR ASN ALA SER ARG SEQRES 4 B 114 LEU ALA THR VAL ILE ALA ALA VAL ILE THR SER ASN THR SEQRES 5 B 114 ALA LEU ALA ALA MET PRO GLY ASN VAL PHE LEU PRO ALA SEQRES 6 B 114 THR THR THR ARG LEU PRO ARG ASP SER VAL VAL ASN VAL SEQRES 7 B 114 THR ALA ILE VAL THR LEU ASN LYS THR ASP LEU THR ASP SEQRES 8 B 114 ARG VAL GLY GLU VAL PRO ALA SER LEU MET HIS GLU VAL SEQRES 9 B 114 ASP ARG GLY LEU ARG ARG VAL LEU ASP LEU SEQRES 1 C 114 MET VAL ILE SER ARG ALA GLU ILE TYR TRP ALA ASP LEU SEQRES 2 C 114 GLY PRO PRO SER GLY SER GLN PRO ALA LYS ARG ARG PRO SEQRES 3 C 114 VAL LEU VAL ILE GLN SER ASP PRO TYR ASN ALA SER ARG SEQRES 4 C 114 LEU ALA THR VAL ILE ALA ALA VAL ILE THR SER ASN THR SEQRES 5 C 114 ALA LEU ALA ALA MET PRO GLY ASN VAL PHE LEU PRO ALA SEQRES 6 C 114 THR THR THR ARG LEU PRO ARG ASP SER VAL VAL ASN VAL SEQRES 7 C 114 THR ALA ILE VAL THR LEU ASN LYS THR ASP LEU THR ASP SEQRES 8 C 114 ARG VAL GLY GLU VAL PRO ALA SER LEU MET HIS GLU VAL SEQRES 9 C 114 ASP ARG GLY LEU ARG ARG VAL LEU ASP LEU SEQRES 1 D 114 MET VAL ILE SER ARG ALA GLU ILE TYR TRP ALA ASP LEU SEQRES 2 D 114 GLY PRO PRO SER GLY SER GLN PRO ALA LYS ARG ARG PRO SEQRES 3 D 114 VAL LEU VAL ILE GLN SER ASP PRO TYR ASN ALA SER ARG SEQRES 4 D 114 LEU ALA THR VAL ILE ALA ALA VAL ILE THR SER ASN THR SEQRES 5 D 114 ALA LEU ALA ALA MET PRO GLY ASN VAL PHE LEU PRO ALA SEQRES 6 D 114 THR THR THR ARG LEU PRO ARG ASP SER VAL VAL ASN VAL SEQRES 7 D 114 THR ALA ILE VAL THR LEU ASN LYS THR ASP LEU THR ASP SEQRES 8 D 114 ARG VAL GLY GLU VAL PRO ALA SER LEU MET HIS GLU VAL SEQRES 9 D 114 ASP ARG GLY LEU ARG ARG VAL LEU ASP LEU SEQRES 1 E 11 A G U C DU C C U U U C SEQRES 1 F 11 A G U C DU C C U U U C FORMUL 7 HOH *172(H2 O) HELIX 1 AA1 SER A 32 SER A 38 1 7 HELIX 2 AA2 ALA A 53 MET A 57 5 5 HELIX 3 AA3 PRO A 64 ARG A 69 1 6 HELIX 4 AA4 THR A 87 LEU A 89 5 3 HELIX 5 AA5 PRO A 97 LEU A 112 1 16 HELIX 6 AA6 SER B 32 SER B 38 1 7 HELIX 7 AA7 ASN B 51 MET B 57 5 7 HELIX 8 AA8 PRO B 64 ARG B 69 1 6 HELIX 9 AA9 PRO B 97 LEU B 112 1 16 HELIX 10 AB1 SER C 32 ARG C 39 1 8 HELIX 11 AB2 THR C 87 THR C 90 5 4 HELIX 12 AB3 PRO C 97 ASP C 113 1 17 HELIX 13 AB4 SER D 32 ARG D 39 1 8 HELIX 14 AB5 PRO D 64 ARG D 69 1 6 HELIX 15 AB6 THR D 87 LEU D 89 5 3 HELIX 16 AB7 PRO D 97 LEU D 112 1 16 SHEET 1 AA1 6 VAL A 61 LEU A 63 0 SHEET 2 AA1 6 SER A 74 ASN A 85 -1 O SER A 74 N LEU A 63 SHEET 3 AA1 6 THR A 42 THR A 49 -1 N VAL A 43 O LEU A 84 SHEET 4 AA1 6 LYS A 23 VAL A 29 -1 N PRO A 26 O ILE A 48 SHEET 5 AA1 6 GLU A 7 LEU A 13 -1 N LEU A 13 O LYS A 23 SHEET 6 AA1 6 ASP A 91 GLU A 95 -1 O GLY A 94 N ILE A 8 SHEET 1 AA2 6 VAL B 61 LEU B 63 0 SHEET 2 AA2 6 SER B 74 ASN B 85 -1 O SER B 74 N LEU B 63 SHEET 3 AA2 6 THR B 42 THR B 49 -1 N VAL B 43 O LEU B 84 SHEET 4 AA2 6 ARG B 24 VAL B 29 -1 N LEU B 28 O ALA B 46 SHEET 5 AA2 6 GLU B 7 ASP B 12 -1 N ALA B 11 O ARG B 25 SHEET 6 AA2 6 LEU B 89 GLU B 95 -1 O GLY B 94 N ILE B 8 SHEET 1 AA3 6 VAL C 61 LEU C 63 0 SHEET 2 AA3 6 SER C 74 ASN C 85 -1 O SER C 74 N LEU C 63 SHEET 3 AA3 6 THR C 42 THR C 49 -1 N VAL C 47 O ALA C 80 SHEET 4 AA3 6 ARG C 24 VAL C 29 -1 N LEU C 28 O ALA C 46 SHEET 5 AA3 6 GLU C 7 ASP C 12 -1 N GLU C 7 O VAL C 29 SHEET 6 AA3 6 ARG C 92 GLU C 95 -1 O VAL C 93 N ILE C 8 SHEET 1 AA4 6 VAL D 61 LEU D 63 0 SHEET 2 AA4 6 SER D 74 ASN D 85 -1 O SER D 74 N LEU D 63 SHEET 3 AA4 6 THR D 42 THR D 49 -1 N VAL D 47 O ASN D 77 SHEET 4 AA4 6 ARG D 25 VAL D 29 -1 N LEU D 28 O ALA D 46 SHEET 5 AA4 6 GLU D 7 ALA D 11 -1 N TYR D 9 O VAL D 27 SHEET 6 AA4 6 ARG D 92 GLU D 95 -1 O VAL D 93 N ILE D 8 CRYST1 68.338 68.338 88.364 90.00 90.00 120.00 P 32 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014633 0.008448 0.000000 0.00000 SCALE2 0.000000 0.016897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011317 0.00000 MASTER 422 0 0 16 24 0 0 6 0 0 0 38 END