HEADER HYDROLASE 13-OCT-16 5H1Z TITLE CYP153D17 FROM SPHINGOMONAS SP. PAMC 26605 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CYP ALKANE HYDROXYLASE CYP153D17; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP. PAMC 26605; SOURCE 3 ORGANISM_TAXID: 1112214; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS P450, ALKANE HYDROXYLASE, CYP153D17, SPHINGOMONAS SP. PAMC 26605, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEE,J.H.LEE REVDAT 1 11-JAN-17 5H1Z 0 JRNL AUTH C.W.LEE,S.C.YU,J.H.LEE,S.H.PARK,H.PARK,T.J.OH,J.H.LEE JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE CYTOCHROME P450 ALKANE JRNL TITL 2 HYDROXYLASE (CYP153D17) FROM SPHINGOMONAS SP. PAMC 26605 AND JRNL TITL 3 ITS CONFORMATIONAL SUBSTRATE BINDING JRNL REF INT J MOL SCI V. 17 2016 JRNL REFN ESSN 1422-0067 JRNL PMID 27941697 JRNL DOI 10.3390/IJMS17122067 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 13128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 689 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.4300 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.551 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.451 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.829 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3371 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3200 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4583 ; 1.797 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7333 ; 1.175 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 9.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;40.981 ;22.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;19.282 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3788 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1599 ; 7.087 ; 9.697 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1598 ; 7.085 ; 9.699 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1997 ;11.299 ;14.523 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1998 ;11.297 ;14.521 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1772 ; 6.106 ; 9.990 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1773 ; 6.104 ; 9.989 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2587 ; 9.868 ;14.834 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4065 ;16.140 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4066 ;16.138 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5H1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300001862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14358 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.080 REMARK 200 RESOLUTION RANGE LOW (A) : 95.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% (W/V) PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.72667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.45333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.45333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.72667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 215 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -55.35 71.86 REMARK 500 ASP A 22 55.94 70.60 REMARK 500 ALA A 35 62.82 -169.73 REMARK 500 SER A 43 -81.05 175.01 REMARK 500 ASP A 44 -55.02 51.78 REMARK 500 ALA A 70 36.06 -88.89 REMARK 500 ASN A 82 -105.12 60.64 REMARK 500 ASP A 85 -89.71 41.28 REMARK 500 VAL A 86 -133.93 43.48 REMARK 500 ARG A 87 92.25 59.42 REMARK 500 MET A 90 115.11 63.25 REMARK 500 ALA A 93 51.46 -101.75 REMARK 500 ARG A 96 -122.56 57.46 REMARK 500 ASN A 136 -26.66 65.05 REMARK 500 PHE A 139 -176.61 -177.41 REMARK 500 LEU A 149 -90.09 -66.80 REMARK 500 THR A 150 -58.72 2.52 REMARK 500 PHE A 158 -155.60 -90.64 REMARK 500 TRP A 162 -76.75 -2.63 REMARK 500 THR A 169 31.33 -69.83 REMARK 500 PHE A 170 53.03 -104.39 REMARK 500 TRP A 171 -71.56 -46.42 REMARK 500 SER A 172 70.22 7.98 REMARK 500 TRP A 174 50.16 -109.25 REMARK 500 ASP A 177 31.58 99.66 REMARK 500 ILE A 178 -42.13 -131.26 REMARK 500 LEU A 180 88.16 -161.27 REMARK 500 LYS A 182 104.51 65.69 REMARK 500 GLU A 184 20.33 -145.81 REMARK 500 GLU A 185 -41.07 58.70 REMARK 500 LEU A 186 -61.03 98.12 REMARK 500 GLU A 189 -78.44 -133.54 REMARK 500 LYS A 208 78.65 -118.41 REMARK 500 LYS A 211 158.68 75.19 REMARK 500 PRO A 212 -171.30 -63.79 REMARK 500 THR A 214 52.92 -96.11 REMARK 500 PRO A 215 127.15 31.58 REMARK 500 ASP A 216 -58.65 40.09 REMARK 500 LEU A 217 82.71 -37.17 REMARK 500 ILE A 218 -67.91 61.43 REMARK 500 SER A 219 -63.12 6.93 REMARK 500 ILE A 222 -90.20 -147.43 REMARK 500 ASP A 225 -80.17 59.81 REMARK 500 MET A 227 96.79 -54.28 REMARK 500 ALA A 228 175.19 65.63 REMARK 500 GLU A 229 70.28 75.88 REMARK 500 MET A 230 -90.44 -71.72 REMARK 500 ASP A 231 -131.22 -165.61 REMARK 500 GLN A 232 46.90 72.77 REMARK 500 PHE A 235 -71.13 -37.58 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 169 PHE A 170 147.70 REMARK 500 PHE A 170 TRP A 171 146.66 REMARK 500 TRP A 171 SER A 172 -149.82 REMARK 500 ALA A 175 GLY A 176 142.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 356 SG REMARK 620 2 HEM A 501 NA 101.3 REMARK 620 3 HEM A 501 NB 78.8 89.8 REMARK 620 4 HEM A 501 NC 79.6 178.6 89.4 REMARK 620 5 HEM A 501 ND 100.8 90.6 179.5 90.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D12 A 502 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE HAS BEEN DEPOSITED TO NCBI WITH ACCESSION CODE WP_ REMARK 999 010183267.1 DBREF 5H1Z A 1 407 PDB 5H1Z 5H1Z 1 407 SEQRES 1 A 407 ALA THR LEU ALA GLN ASP VAL ILE ASP ARG PHE ASP VAL SEQRES 2 A 407 SER ARG PRO GLU LEU TYR ARG ASP ASP LEU TRP GLN ALA SEQRES 3 A 407 PRO PHE ARG GLU LEU ARG ALA THR ALA PRO VAL HIS ARG SEQRES 4 A 407 VAL GLU HIS SER ASP PHE GLY PRO TYR TRP SER VAL SER SEQRES 5 A 407 SER TYR LYS PRO ILE ILE THR VAL GLU SER LEU PRO ASP SEQRES 6 A 407 LEU TYR SER SER ALA GLY GLY ILE THR LEU ALA ASP PHE SEQRES 7 A 407 ILE GLU ASN ASN PRO THR ASP VAL ARG MET PRO MET PHE SEQRES 8 A 407 ILE ALA MET ASP ARG PRO LYS HIS THR GLY GLN ARG ARG SEQRES 9 A 407 THR VAL ALA PRO ALA PHE THR PRO SER GLU MET VAL ARG SEQRES 10 A 407 MET SER ASP ASN ILE ARG MET ARG THR ALA GLU VAL LEU SEQRES 11 A 407 ASP SER LEU GLU TRP ASN THR PRO PHE ASP TRP VAL ASP SEQRES 12 A 407 THR VAL SER VAL GLU LEU THR THR GLN MET LEU ALA ILE SEQRES 13 A 407 LEU PHE ASP PHE PRO TRP GLU GLU ARG ARG LYS LEU THR SEQRES 14 A 407 PHE TRP SER ASP TRP ALA GLY ASP ILE GLU LEU VAL LYS SEQRES 15 A 407 ASN GLU GLU LEU ARG LEU GLU ARG LEU ARG HIS MET TYR SEQRES 16 A 407 GLU CYS GLY GLY TYR PHE GLN ASN LEU TRP ASN ALA LYS SEQRES 17 A 407 ILE GLY LYS PRO PRO THR PRO ASP LEU ILE SER MET MET SEQRES 18 A 407 ILE HIS SER ASP ALA MET ALA GLU MET ASP GLN MET GLU SEQRES 19 A 407 PHE LEU GLY ASN LEU ILE LEU LEU ILE VAL GLY GLY ASN SEQRES 20 A 407 ASP THR THR ARG ASN THR MET SER ALA VAL ALA TYR GLY SEQRES 21 A 407 LEU ASP LEU PHE PRO ASP GLN ARG ALA LYS LEU GLU ALA SEQRES 22 A 407 ASP PRO SER MET ILE PRO ASN THR VAL GLN GLU ILE ILE SEQRES 23 A 407 ARG TRP GLN THR PRO LEU ALA HIS MET ARG ARG THR ALA SEQRES 24 A 407 THR VAL ASP SER GLU LEU GLU GLY GLN GLN ILE LYS ALA SEQRES 25 A 407 GLY ASP LYS LEU ALA LEU TRP TYR ILE SER ALA ASN ARG SEQRES 26 A 407 ASP GLU SER VAL PHE GLU ASN ALA ASP ARG ILE ILE VAL SEQRES 27 A 407 ASP ARG PRO ASN ALA ARG ARG HIS LEU ALA PHE GLY HIS SEQRES 28 A 407 GLY ILE HIS ARG CYS VAL GLY ALA ARG LEU ALA GLU LEU SEQRES 29 A 407 GLN ILE ALA VAL LEU LEU GLU GLU MET ALA LYS ARG ARG SEQRES 30 A 407 MET ARG VAL ASN VAL LEU GLY GLU PRO GLU ARG VAL ALA SEQRES 31 A 407 ALA CYS PHE VAL HIS GLY TYR ARG LYS LEU PRO VAL GLU SEQRES 32 A 407 ILE SER ARG TYR HET HEM A 501 43 HET D12 A 502 12 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM D12 DODECANE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 D12 C12 H26 FORMUL 4 HOH *7(H2 O) HELIX 1 AA1 ARG A 15 ASP A 21 1 7 HELIX 2 AA2 TRP A 24 ALA A 35 1 12 HELIX 3 AA3 SER A 53 SER A 62 1 10 HELIX 4 AA4 MET A 90 MET A 94 5 5 HELIX 5 AA5 PRO A 97 THR A 105 1 9 HELIX 6 AA6 VAL A 106 PHE A 110 5 5 HELIX 7 AA7 THR A 111 LEU A 133 1 23 HELIX 8 AA8 TRP A 141 VAL A 145 1 5 HELIX 9 AA9 VAL A 147 PHE A 158 1 12 HELIX 10 AB1 GLU A 164 PHE A 170 5 7 HELIX 11 AB2 GLU A 189 LYS A 208 1 20 HELIX 12 AB3 ILE A 218 ILE A 222 5 5 HELIX 13 AB4 GLU A 234 GLY A 246 1 13 HELIX 14 AB5 ASN A 247 PHE A 264 1 18 HELIX 15 AB6 PHE A 264 ASP A 274 1 11 HELIX 16 AB7 MET A 277 THR A 290 1 14 HELIX 17 AB8 TYR A 320 ASN A 324 1 5 HELIX 18 AB9 ARG A 340 HIS A 346 5 7 HELIX 19 AC1 HIS A 351 ARG A 355 5 5 HELIX 20 AC2 GLY A 358 ARG A 377 1 20 SHEET 1 AA1 4 VAL A 37 VAL A 40 0 SHEET 2 AA1 4 TYR A 48 VAL A 51 -1 O TYR A 48 N VAL A 40 SHEET 3 AA1 4 LEU A 316 TRP A 319 1 O ALA A 317 N VAL A 51 SHEET 4 AA1 4 HIS A 294 MET A 295 -1 N MET A 295 O LEU A 318 SHEET 1 AA2 2 TYR A 67 SER A 68 0 SHEET 2 AA2 2 THR A 298 ALA A 299 -1 O THR A 298 N SER A 68 SHEET 1 AA3 3 PHE A 139 ASP A 140 0 SHEET 2 AA3 3 PRO A 401 ILE A 404 -1 O VAL A 402 N PHE A 139 SHEET 3 AA3 3 VAL A 380 VAL A 382 -1 N ASN A 381 O GLU A 403 SHEET 1 AA4 2 SER A 303 LEU A 305 0 SHEET 2 AA4 2 GLN A 308 ILE A 310 -1 O ILE A 310 N SER A 303 SHEET 1 AA5 2 GLU A 387 ARG A 388 0 SHEET 2 AA5 2 TYR A 397 LYS A 399 -1 O ARG A 398 N GLU A 387 LINK SG CYS A 356 FE HEM A 501 1555 1555 2.22 CISPEP 1 HIS A 42 SER A 43 0 3.34 CISPEP 2 PHE A 160 PRO A 161 0 -26.64 SITE 1 AC1 21 GLU A 61 PHE A 91 ILE A 92 HIS A 99 SITE 2 AC1 21 ARG A 103 PHE A 110 GLY A 245 THR A 249 SITE 3 AC1 21 THR A 253 ARG A 297 ALA A 348 PHE A 349 SITE 4 AC1 21 GLY A 350 HIS A 351 HIS A 354 ARG A 355 SITE 5 AC1 21 CYS A 356 VAL A 357 GLY A 358 ALA A 362 SITE 6 AC1 21 D12 A 502 SITE 1 AC2 7 THR A 74 MET A 90 ALA A 175 LEU A 241 SITE 2 AC2 7 GLY A 245 PHE A 393 HEM A 501 CRYST1 110.837 110.837 113.180 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009022 0.005209 0.000000 0.00000 SCALE2 0.000000 0.010418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008835 0.00000 MASTER 390 0 2 20 13 0 8 6 0 0 0 32 END