HEADER VIRAL PROTEIN/IMMUNE SYSTEM 15-JUL-16 5GMQ TITLE STRUCTURE OF MERS-COV RBD IN COMPLEX WITH A FULLY HUMAN ANTIBODY MCA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: S PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 367-588; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MCA1 HEAVY CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: MCA1 LIGHT CHAIN; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS; SOURCE 3 ORGANISM_TAXID: 1335626; SOURCE 4 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR PCBIO; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 386595; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR PCBIO; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 386595 KEYWDS VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN,J.M.WANG,T.T.ZOU,X.P.GAO,S.CUI,Q.JIN REVDAT 3 29-JUL-20 5GMQ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 06-DEC-17 5GMQ 1 JRNL REVDAT 1 31-MAY-17 5GMQ 0 JRNL AUTH Z.CHEN,L.BAO,C.CHEN,T.ZOU,Y.XUE,F.LI,Q.LV,S.GU,X.GAO,S.CUI, JRNL AUTH 2 J.WANG,C.QIN,Q.JIN JRNL TITL HUMAN NEUTRALIZING MONOCLONAL ANTIBODY INHIBITION OF MIDDLE JRNL TITL 2 EAST RESPIRATORY SYNDROME CORONAVIRUS REPLICATION IN THE JRNL TITL 3 COMMON MARMOSET. JRNL REF J. INFECT. DIS. V. 215 1807 2017 JRNL REFN ESSN 1537-6613 JRNL PMID 28472421 JRNL DOI 10.1093/INFDIS/JIX209 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 36287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3362 - 6.1809 0.96 2911 144 0.2118 0.2623 REMARK 3 2 6.1809 - 4.9087 0.99 2894 157 0.2055 0.2280 REMARK 3 3 4.9087 - 4.2890 0.99 2881 152 0.1831 0.2277 REMARK 3 4 4.2890 - 3.8972 1.00 2916 144 0.2127 0.2677 REMARK 3 5 3.8972 - 3.6181 1.00 2874 141 0.2466 0.2761 REMARK 3 6 3.6181 - 3.4049 1.00 2893 131 0.2695 0.3098 REMARK 3 7 3.4049 - 3.2345 1.00 2847 171 0.2818 0.3331 REMARK 3 8 3.2345 - 3.0937 1.00 2866 156 0.2975 0.3538 REMARK 3 9 3.0937 - 2.9747 1.00 2878 123 0.3146 0.3913 REMARK 3 10 2.9747 - 2.8720 1.00 2872 138 0.3118 0.4067 REMARK 3 11 2.8720 - 2.7823 1.00 2840 149 0.3188 0.3648 REMARK 3 12 2.7823 - 2.7027 1.00 2882 127 0.3241 0.3796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5051 REMARK 3 ANGLE : 1.161 6880 REMARK 3 CHIRALITY : 0.067 793 REMARK 3 PLANARITY : 0.007 868 REMARK 3 DIHEDRAL : 16.574 3046 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5GMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1300001079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.703 REMARK 200 RESOLUTION RANGE LOW (A) : 40.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5DO2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M CITRIC ACID, 0.04 M BIS-TRIS REMARK 280 PROPANE, 16% (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.49800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.99600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.99600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.49800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 366 REMARK 465 GLU A 367 REMARK 465 ALA A 368 REMARK 465 LYS A 369 REMARK 465 PRO A 370 REMARK 465 SER A 371 REMARK 465 GLY A 372 REMARK 465 SER A 373 REMARK 465 VAL A 374 REMARK 465 VAL A 375 REMARK 465 GLU A 376 REMARK 465 GLN A 377 REMARK 465 ALA A 378 REMARK 465 GLU A 379 REMARK 465 GLY A 380 REMARK 465 THR A 579 REMARK 465 ASP A 580 REMARK 465 LEU A 588 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 HIS A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 SER B 223 REMARK 465 CYS B 224 REMARK 465 ASP B 225 REMARK 465 LYS B 226 REMARK 465 THR B 227 REMARK 465 SER B 228 REMARK 465 ASN C 151 REMARK 465 ALA C 152 REMARK 465 VAL C 190 REMARK 465 GLY C 211 REMARK 465 GLU C 212 REMARK 465 CYS C 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 222 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 53 O PHE C 61 1.94 REMARK 500 NZ LYS B 125 O ASP B 152 1.99 REMARK 500 O LEU A 389 OG1 THR A 490 2.05 REMARK 500 O LYS B 10 OG SER B 13 2.09 REMARK 500 O HIS C 188 NH2 ARG C 210 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 93 CB CYS B 93 SG -0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 63 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 406 71.08 41.13 REMARK 500 PHE A 423 92.73 -161.71 REMARK 500 LEU A 456 35.22 -92.74 REMARK 500 SER A 459 52.59 -94.58 REMARK 500 ALA A 461 13.08 -68.07 REMARK 500 TYR A 469 116.27 9.18 REMARK 500 ARG A 511 -33.41 -139.99 REMARK 500 ASP A 539 154.96 -48.39 REMARK 500 PRO A 586 -154.06 -70.54 REMARK 500 THR B 25 -169.02 -123.36 REMARK 500 PHE B 26 -47.31 -144.05 REMARK 500 GLN B 62 82.02 -66.19 REMARK 500 ARG B 64 -67.37 136.42 REMARK 500 SER B 74 45.38 33.38 REMARK 500 LEU B 83 174.30 -57.47 REMARK 500 ASP B 102 -124.24 55.10 REMARK 500 LEU B 132 69.29 -106.57 REMARK 500 ASP B 152 72.28 53.69 REMARK 500 SER B 164 9.78 53.72 REMARK 500 HIS B 208 76.77 -116.77 REMARK 500 SER C 51 -10.85 -147.29 REMARK 500 TYR C 90 30.02 -141.44 REMARK 500 GLN C 154 112.50 50.49 REMARK 500 SER C 158 -165.75 -72.79 REMARK 500 GLN C 159 162.45 179.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG D 1 DBREF 5GMQ A 367 588 UNP V5RDT9 V5RDT9_9BETC 367 588 DBREF 5GMQ B -2 228 PDB 5GMQ 5GMQ -2 228 DBREF 5GMQ C -1 213 PDB 5GMQ 5GMQ -1 213 SEQADV 5GMQ MET A 366 UNP V5RDT9 INITIATING METHIONINE SEQADV 5GMQ HIS A 589 UNP V5RDT9 EXPRESSION TAG SEQADV 5GMQ HIS A 590 UNP V5RDT9 EXPRESSION TAG SEQADV 5GMQ HIS A 591 UNP V5RDT9 EXPRESSION TAG SEQADV 5GMQ HIS A 592 UNP V5RDT9 EXPRESSION TAG SEQADV 5GMQ HIS A 593 UNP V5RDT9 EXPRESSION TAG SEQADV 5GMQ HIS A 594 UNP V5RDT9 EXPRESSION TAG SEQRES 1 A 229 MET GLU ALA LYS PRO SER GLY SER VAL VAL GLU GLN ALA SEQRES 2 A 229 GLU GLY VAL GLU CYS ASP PHE SER PRO LEU LEU SER GLY SEQRES 3 A 229 THR PRO PRO GLN VAL TYR ASN PHE LYS ARG LEU VAL PHE SEQRES 4 A 229 THR ASN CYS ASN TYR ASN LEU THR LYS LEU LEU SER LEU SEQRES 5 A 229 PHE SER VAL ASN ASP PHE THR CYS SER GLN ILE SER PRO SEQRES 6 A 229 ALA ALA ILE ALA SER ASN CYS TYR SER SER LEU ILE LEU SEQRES 7 A 229 ASP TYR PHE SER TYR PRO LEU SER MET LYS SER ASP LEU SEQRES 8 A 229 SER VAL SER SER ALA GLY PRO ILE SER GLN PHE ASN TYR SEQRES 9 A 229 LYS GLN SER PHE SER ASN PRO THR CYS LEU ILE LEU ALA SEQRES 10 A 229 THR VAL PRO HIS ASN LEU THR THR ILE THR LYS PRO LEU SEQRES 11 A 229 LYS TYR SER TYR ILE ASN LYS CYS SER ARG LEU LEU SER SEQRES 12 A 229 ASP ASP ARG THR GLU VAL PRO GLN LEU VAL ASN ALA ASN SEQRES 13 A 229 GLN TYR SER PRO CYS VAL SER ILE VAL PRO SER THR VAL SEQRES 14 A 229 TRP GLU ASP GLY ASP TYR TYR ARG LYS GLN LEU SER PRO SEQRES 15 A 229 LEU GLU GLY GLY GLY TRP LEU VAL ALA SER GLY SER THR SEQRES 16 A 229 VAL ALA MET THR GLU GLN LEU GLN MET GLY PHE GLY ILE SEQRES 17 A 229 THR VAL GLN TYR GLY THR ASP THR ASN SER VAL CYS PRO SEQRES 18 A 229 LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 231 ALA THR ARG LEU GLU GLU SER GLY ALA GLU VAL LYS LYS SEQRES 2 B 231 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 231 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 B 231 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ARG ILE ILE SEQRES 5 B 231 PRO ILE LEU GLY ILE ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 B 231 GLY ARG VAL THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 B 231 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 B 231 ALA VAL TYR TYR CYS ALA SER LYS GLN GLY ASP TYR TYR SEQRES 9 B 231 ASP ARG THR SER TYR ALA PHE ASP ILE TRP GLY GLN GLY SEQRES 10 B 231 THR MET VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 B 231 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 B 231 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 B 231 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 B 231 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 B 231 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 B 231 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 B 231 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 B 231 VAL GLU PRO LYS SER CYS ASP LYS THR SER SEQRES 1 C 215 ASP VAL GLU LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 C 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 C 215 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 C 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 C 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 C 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 C 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 C 215 TYR GLY SER SER PRO ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 C 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 C 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 C 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 C 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 C 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 C 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 C 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 C 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 C 215 SER PHE ASN ARG GLY GLU CYS HET NAG D 1 14 HET MAN D 2 11 HET MAN D 3 11 HET EDO C 301 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NAG C8 H15 N O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *16(H2 O) HELIX 1 AA1 PHE A 385 SER A 390 5 6 HELIX 2 AA2 GLN A 395 PHE A 399 5 5 HELIX 3 AA3 ASN A 410 SER A 416 1 7 HELIX 4 AA4 SER A 429 ALA A 434 1 6 HELIX 5 AA5 PRO A 449 SER A 457 5 9 HELIX 6 AA6 GLY A 462 PHE A 467 1 6 HELIX 7 AA7 SER A 524 ILE A 529 5 6 HELIX 8 AA8 ILE B 49 GLY B 53 5 5 HELIX 9 AA9 ARG B 103 ALA B 107 5 5 HELIX 10 AB1 SER B 164 ALA B 166 5 3 HELIX 11 AB2 SER B 195 GLN B 200 1 6 HELIX 12 AB3 SER C 28 SER C 30 5 3 HELIX 13 AB4 GLU C 78 PHE C 82 5 5 HELIX 14 AB5 SER C 120 LYS C 125 1 6 HELIX 15 AB6 LYS C 182 GLU C 186 1 5 SHEET 1 AA1 5 LYS A 400 PHE A 404 0 SHEET 2 AA1 5 SER A 440 SER A 447 -1 O LEU A 441 N PHE A 404 SHEET 3 AA1 5 GLN A 568 GLN A 576 -1 O GLY A 572 N ASP A 444 SHEET 4 AA1 5 THR A 477 THR A 483 -1 N ILE A 480 O PHE A 571 SHEET 5 AA1 5 SER A 419 SER A 426 -1 N THR A 424 O LEU A 479 SHEET 1 AA2 4 GLU A 513 PRO A 515 0 SHEET 2 AA2 4 TYR A 497 LEU A 506 -1 N ARG A 505 O VAL A 514 SHEET 3 AA2 4 TRP A 553 VAL A 561 -1 O TRP A 553 N LEU A 506 SHEET 4 AA2 4 TYR A 540 GLN A 544 -1 N LYS A 543 O LEU A 554 SHEET 1 AA3 4 ARG B 0 GLU B 3 0 SHEET 2 AA3 4 VAL B 15 SER B 22 -1 O LYS B 20 N GLU B 2 SHEET 3 AA3 4 THR B 75 LEU B 80 -1 O MET B 78 N VAL B 17 SHEET 4 AA3 4 VAL B 65 ASP B 70 -1 N ASP B 70 O THR B 75 SHEET 1 AA4 6 GLU B 7 LYS B 9 0 SHEET 2 AA4 6 MET B 116 VAL B 119 1 O THR B 118 N LYS B 9 SHEET 3 AA4 6 ALA B 89 SER B 95 -1 N ALA B 89 O VAL B 117 SHEET 4 AA4 6 ILE B 31 GLN B 36 -1 N VAL B 34 O TYR B 92 SHEET 5 AA4 6 LEU B 42 ILE B 48 -1 O ILE B 48 N ILE B 31 SHEET 6 AA4 6 ASN B 56 TYR B 57 -1 O ASN B 56 N ARG B 47 SHEET 1 AA5 4 GLU B 7 LYS B 9 0 SHEET 2 AA5 4 MET B 116 VAL B 119 1 O THR B 118 N LYS B 9 SHEET 3 AA5 4 ALA B 89 SER B 95 -1 N ALA B 89 O VAL B 117 SHEET 4 AA5 4 ILE B 110 TRP B 111 -1 O ILE B 110 N SER B 95 SHEET 1 AA6 4 VAL B 129 LEU B 132 0 SHEET 2 AA6 4 THR B 143 TYR B 153 -1 O LEU B 149 N PHE B 130 SHEET 3 AA6 4 TYR B 184 PRO B 193 -1 O VAL B 192 N ALA B 144 SHEET 4 AA6 4 HIS B 172 THR B 173 -1 N HIS B 172 O VAL B 189 SHEET 1 AA7 4 THR B 139 SER B 140 0 SHEET 2 AA7 4 THR B 143 TYR B 153 -1 O THR B 143 N SER B 140 SHEET 3 AA7 4 TYR B 184 PRO B 193 -1 O VAL B 192 N ALA B 144 SHEET 4 AA7 4 VAL B 177 LEU B 178 -1 N VAL B 177 O SER B 185 SHEET 1 AA8 3 THR B 159 TRP B 162 0 SHEET 2 AA8 3 TYR B 202 HIS B 208 -1 O ASN B 205 N SER B 161 SHEET 3 AA8 3 THR B 213 VAL B 219 -1 O THR B 213 N HIS B 208 SHEET 1 AA9 4 LEU C 2 SER C 5 0 SHEET 2 AA9 4 ALA C 17 ALA C 23 -1 O ARG C 22 N THR C 3 SHEET 3 AA9 4 ASP C 69 ILE C 74 -1 O PHE C 70 N CYS C 21 SHEET 4 AA9 4 PHE C 61 SER C 66 -1 N SER C 62 O THR C 73 SHEET 1 AB1 6 THR C 8 LEU C 11 0 SHEET 2 AB1 6 THR C 101 ILE C 105 1 O ARG C 102 N LEU C 9 SHEET 3 AB1 6 VAL C 84 GLN C 89 -1 N TYR C 85 O THR C 101 SHEET 4 AB1 6 LEU C 32 GLN C 37 -1 N GLN C 37 O VAL C 84 SHEET 5 AB1 6 ARG C 44 TYR C 48 -1 O ILE C 47 N TRP C 34 SHEET 6 AB1 6 SER C 52 ARG C 53 -1 O SER C 52 N TYR C 48 SHEET 1 AB2 4 THR C 8 LEU C 11 0 SHEET 2 AB2 4 THR C 101 ILE C 105 1 O ARG C 102 N LEU C 9 SHEET 3 AB2 4 VAL C 84 GLN C 89 -1 N TYR C 85 O THR C 101 SHEET 4 AB2 4 THR C 96 PHE C 97 -1 O THR C 96 N GLN C 89 SHEET 1 AB3 3 SER C 113 PHE C 117 0 SHEET 2 AB3 3 THR C 128 PHE C 138 -1 O VAL C 132 N PHE C 117 SHEET 3 AB3 3 TYR C 172 SER C 181 -1 O TYR C 172 N PHE C 138 SHEET 1 AB4 2 LYS C 144 LYS C 148 0 SHEET 2 AB4 2 ALA C 192 THR C 196 -1 O GLU C 194 N GLN C 146 SSBOND 1 CYS A 383 CYS A 407 1555 1555 2.01 SSBOND 2 CYS A 425 CYS A 478 1555 1555 2.03 SSBOND 3 CYS A 437 CYS A 585 1555 1555 2.02 SSBOND 4 CYS A 503 CYS A 526 1555 1555 2.02 SSBOND 5 CYS B 19 CYS B 93 1555 1555 2.00 SSBOND 6 CYS B 148 CYS B 204 1555 1555 2.04 SSBOND 7 CYS C 21 CYS C 87 1555 1555 2.03 SSBOND 8 CYS C 133 CYS C 193 1555 1555 2.03 LINK O4 NAG D 1 C1 MAN D 2 1555 1555 1.45 LINK O3 MAN D 2 C1 MAN D 3 1555 1555 1.43 CISPEP 1 GLY B 63 ARG B 64 0 9.14 CISPEP 2 PHE B 154 PRO B 155 0 -4.09 CISPEP 3 GLU B 156 PRO B 157 0 0.40 CISPEP 4 SER C 5 PRO C 6 0 -6.20 CISPEP 5 GLY C 49 ALA C 50 0 13.92 CISPEP 6 SER C 93 PRO C 94 0 -1.72 CISPEP 7 TYR C 139 PRO C 140 0 2.71 CISPEP 8 VAL C 149 ASP C 150 0 -14.36 CRYST1 153.460 153.460 97.494 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006516 0.003762 0.000000 0.00000 SCALE2 0.000000 0.007524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010257 0.00000 MASTER 358 0 4 15 53 0 0 6 0 0 0 53 END