HEADER SIGNALING PROTEIN 15-DEC-15 5FR1 TITLE DOUBLE ACETYLATED RHOGDI-ALPHA IN COMPLEX WITH RHOA-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RHOA, RHO CDNA CLONE 12, H12; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: GDP-BOUND; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RHO GDP-DISSOCIATION INHIBITOR 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RHOGDI-ALPHA, RHO GDI 1, RHO-GDI ALPHA; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: LYSINE-ACETYLATED AT K127 AND K141 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: CATTLE; SOURCE 13 ORGANISM_TAXID: 9913; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: RSF-DUET KEYWDS SIGNALING PROTEIN, RAS-SUPERFAMILY, GUANINE-NUCLEOTIDE-BINDING KEYWDS 2 PROTEIN, MOLECULAR SWITCH, ACTIN-CYTOSKELETON RHOGDI-ALPHA, KEYWDS 3 NUCLEOTIDE DISSOCIATION, PRENYLATION, LYSINE-ACETYLATION EXPDTA X-RAY DIFFRACTION AUTHOR N.KUHLMANN,S.WROBLOWSKI,M.LAMMERS REVDAT 3 16-OCT-19 5FR1 1 REMARK LINK REVDAT 2 03-FEB-16 5FR1 1 JRNL REVDAT 1 13-JAN-16 5FR1 0 JRNL AUTH N.KUHLMANN,S.WROBLOWSKI,L.SCISLOWSKI,M.LAMMERS JRNL TITL RHOGDI ALPHA ACETYLATION AT K127 AND K141 AFFECTS BINDING JRNL TITL 2 TOWARDS NON-PRENYLATED RHOA. JRNL REF BIOCHEMISTRY V. 55 304 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26695096 JRNL DOI 10.1021/ACS.BIOCHEM.5B01242 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 558 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 814 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -1.23000 REMARK 3 B33 (A**2) : 1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.363 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2913 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2786 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3937 ; 1.674 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6448 ; 0.835 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 347 ; 6.438 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;37.444 ;24.403 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;17.713 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3200 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 618 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1400 ; 1.994 ; 4.660 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1399 ; 1.994 ; 4.659 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1743 ; 3.315 ; 6.988 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1744 ; 3.314 ; 6.988 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1513 ; 2.394 ; 4.935 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1505 ; 2.392 ; 4.932 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2182 ; 3.931 ; 7.281 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3177 ; 5.889 ;36.507 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3172 ; 5.884 ;36.486 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2923 9.2115 -20.5667 REMARK 3 T TENSOR REMARK 3 T11: 0.1279 T22: 0.1060 REMARK 3 T33: 0.0107 T12: 0.0063 REMARK 3 T13: 0.0212 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.8024 L22: 1.6205 REMARK 3 L33: 1.1992 L12: 0.4991 REMARK 3 L13: -0.1760 L23: -0.4976 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: 0.1954 S13: -0.0718 REMARK 3 S21: -0.1836 S22: 0.0352 S23: -0.0223 REMARK 3 S31: 0.0327 S32: -0.0134 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0586 -7.5065 5.3519 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.0908 REMARK 3 T33: 0.0299 T12: 0.0077 REMARK 3 T13: -0.0028 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.2361 L22: 3.1106 REMARK 3 L33: 0.1395 L12: -1.2975 REMARK 3 L13: 0.2114 L23: -0.6176 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.1235 S13: -0.1653 REMARK 3 S21: 0.1924 S22: 0.0358 S23: 0.1384 REMARK 3 S31: -0.0797 S32: -0.0109 S33: -0.0176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U REMARK 3 VALUES WITH TLS ADDED REMARK 4 REMARK 4 5FR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1290065787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 60.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HH4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 182 REMARK 465 ARG A 183 REMARK 465 GLY A 184 REMARK 465 LYS A 185 REMARK 465 LYS A 186 REMARK 465 LYS A 187 REMARK 465 HIS B -8 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 PRO B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 GLU B 9 REMARK 465 GLN B 10 REMARK 465 LEU B 11 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 ILE B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 GLU B 17 REMARK 465 ASN B 18 REMARK 465 GLU B 19 REMARK 465 GLU B 20 REMARK 465 ASP B 21 REMARK 465 GLU B 22 REMARK 465 HIS B 23 REMARK 465 SER B 24 REMARK 465 VAL B 25 REMARK 465 GLY B 57 REMARK 465 ARG B 58 REMARK 465 VAL B 59 REMARK 465 ALA B 60 REMARK 465 VAL B 61 REMARK 465 SER B 62 REMARK 465 ALA B 63 REMARK 465 ASP B 64 REMARK 465 PRO B 65 REMARK 465 ASN B 66 REMARK 465 LYS B 203 REMARK 465 ASP B 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 118 O4' GDP A 1194 1.53 REMARK 500 O GLU B 95 HZ3 LYS B 99 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 13 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 88 87.63 -153.51 REMARK 500 LYS A 98 -57.70 -136.05 REMARK 500 LEU B 94 -4.08 -58.22 REMARK 500 ARG B 120 -46.58 -131.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1195 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A1194 O1B REMARK 620 2 GDP A1194 O3B 55.9 REMARK 620 3 HOH A2005 O 90.8 93.1 REMARK 620 4 HOH A2004 O 96.5 125.9 136.9 REMARK 620 5 THR A 37 O 158.8 142.5 79.3 78.8 REMARK 620 6 THR A 19 OG1 73.0 124.5 65.6 76.1 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FR2 RELATED DB: PDB REMARK 900 FARNESYLATED RHOA-GDP IN COMPLEX WITH RHOGDI-ALPHA, LYSINE REMARK 900 ACETYLATED AT K178 REMARK 999 REMARK 999 SEQUENCE REMARK 999 LYSINE-ACETYLATED AT K127 AND K141 DBREF 5FR1 A 1 193 UNP P61586 RHOA_HUMAN 1 193 DBREF 5FR1 B 1 204 UNP P19803 GDIR1_BOVIN 1 204 SEQADV 5FR1 GLY A -2 UNP P61586 EXPRESSION TAG SEQADV 5FR1 GLY A -1 UNP P61586 EXPRESSION TAG SEQADV 5FR1 SER A 0 UNP P61586 EXPRESSION TAG SEQADV 5FR1 HIS B -8 UNP P19803 EXPRESSION TAG SEQADV 5FR1 MET B -7 UNP P19803 EXPRESSION TAG SEQADV 5FR1 ALA B -6 UNP P19803 EXPRESSION TAG SEQADV 5FR1 HIS B -5 UNP P19803 EXPRESSION TAG SEQADV 5FR1 HIS B -4 UNP P19803 EXPRESSION TAG SEQADV 5FR1 HIS B -3 UNP P19803 EXPRESSION TAG SEQADV 5FR1 HIS B -2 UNP P19803 EXPRESSION TAG SEQADV 5FR1 HIS B -1 UNP P19803 EXPRESSION TAG SEQADV 5FR1 HIS B 0 UNP P19803 EXPRESSION TAG SEQRES 1 A 196 GLY GLY SER MET ALA ALA ILE ARG LYS LYS LEU VAL ILE SEQRES 2 A 196 VAL GLY ASP GLY ALA CYS GLY LYS THR CYS LEU LEU ILE SEQRES 3 A 196 VAL PHE SER LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO SEQRES 4 A 196 THR VAL PHE GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP SEQRES 5 A 196 GLY LYS GLN VAL GLU LEU ALA LEU TRP ASP THR ALA GLY SEQRES 6 A 196 GLN GLU ASP TYR ASP ARG LEU ARG PRO LEU SER TYR PRO SEQRES 7 A 196 ASP THR ASP VAL ILE LEU MET CYS PHE SER ILE ASP SER SEQRES 8 A 196 PRO ASP SER LEU GLU ASN ILE PRO GLU LYS TRP THR PRO SEQRES 9 A 196 GLU VAL LYS HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU SEQRES 10 A 196 VAL GLY ASN LYS LYS ASP LEU ARG ASN ASP GLU HIS THR SEQRES 11 A 196 ARG ARG GLU LEU ALA LYS MET LYS GLN GLU PRO VAL LYS SEQRES 12 A 196 PRO GLU GLU GLY ARG ASP MET ALA ASN ARG ILE GLY ALA SEQRES 13 A 196 PHE GLY TYR MET GLU CYS SER ALA LYS THR LYS ASP GLY SEQRES 14 A 196 VAL ARG GLU VAL PHE GLU MET ALA THR ARG ALA ALA LEU SEQRES 15 A 196 GLN ALA ARG ARG GLY LYS LYS LYS SER GLY CYS LEU VAL SEQRES 16 A 196 LEU SEQRES 1 B 213 HIS MET ALA HIS HIS HIS HIS HIS HIS MET ALA GLU GLN SEQRES 2 B 213 GLU PRO THR ALA GLU GLN LEU ALA GLN ILE ALA ALA GLU SEQRES 3 B 213 ASN GLU GLU ASP GLU HIS SER VAL ASN TYR LYS PRO PRO SEQRES 4 B 213 ALA GLN LYS SER ILE GLN GLU ILE GLN GLU LEU ASP LYS SEQRES 5 B 213 ASP ASP GLU SER LEU ARG LYS TYR LYS GLU ALA LEU LEU SEQRES 6 B 213 GLY ARG VAL ALA VAL SER ALA ASP PRO ASN VAL PRO ASN SEQRES 7 B 213 VAL VAL VAL THR ARG LEU THR LEU VAL CYS SER THR ALA SEQRES 8 B 213 PRO GLY PRO LEU GLU LEU ASP LEU THR GLY ASP LEU GLU SEQRES 9 B 213 SER PHE LYS LYS GLN SER PHE VAL LEU LYS GLU GLY VAL SEQRES 10 B 213 GLU TYR ARG ILE LYS ILE SER PHE ARG VAL ASN ARG GLU SEQRES 11 B 213 ILE VAL SER GLY MET ALY TYR ILE GLN HIS THR TYR ARG SEQRES 12 B 213 LYS GLY VAL LYS ILE ASP ALY THR ASP TYR MET VAL GLY SEQRES 13 B 213 SER TYR GLY PRO ARG ALA GLU GLU TYR GLU PHE LEU THR SEQRES 14 B 213 PRO MET GLU GLU ALA PRO LYS GLY MET LEU ALA ARG GLY SEQRES 15 B 213 SER TYR ASN ILE LYS SER ARG PHE THR ASP ASP ASP ARG SEQRES 16 B 213 THR ASP HIS LEU SER TRP GLU TRP ASN LEU THR ILE LYS SEQRES 17 B 213 LYS GLU TRP LYS ASP MODRES 5FR1 ALY B 127 LYS N(6)-ACETYLLYSINE MODRES 5FR1 ALY B 141 LYS N(6)-ACETYLLYSINE HET ALY B 127 25 HET ALY B 141 25 HET GDP A1194 40 HET MG A1195 1 HET MG A1196 1 HET MG B1203 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ALY 2(C8 H16 N2 O3) FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *15(H2 O) HELIX 1 1 GLY A 17 ASP A 28 1 12 HELIX 2 2 GLN A 63 ASP A 67 5 5 HELIX 3 3 LEU A 69 TYR A 74 5 6 HELIX 4 4 SER A 88 CYS A 107 1 20 HELIX 5 5 LYS A 118 ARG A 122 5 5 HELIX 6 6 ASP A 124 LYS A 133 1 10 HELIX 7 7 LYS A 140 ILE A 151 1 12 HELIX 8 8 GLY A 166 ALA A 181 1 16 HELIX 9 9 SER B 34 LEU B 41 1 8 HELIX 10 10 ASP B 45 LEU B 56 1 12 HELIX 11 11 ASP B 93 PHE B 97 5 5 HELIX 12 12 GLY B 168 ARG B 172 5 5 SHEET 1 AA 6 TYR A 42 GLU A 47 0 SHEET 2 AA 6 GLN A 52 TRP A 58 -1 O VAL A 53 N ILE A 46 SHEET 3 AA 6 ARG A 5 GLY A 12 1 O LYS A 6 N ALA A 56 SHEET 4 AA 6 VAL A 79 SER A 85 1 O VAL A 79 N VAL A 9 SHEET 5 AA 6 ILE A 112 ASN A 117 1 O ILE A 113 N MET A 82 SHEET 6 AA 6 GLY A 155 GLU A 158 1 O GLY A 155 N LEU A 114 SHEET 1 AB 4 LEU A 191 LEU A 193 0 SHEET 2 AB 4 TYR B 156 LEU B 159 -1 O GLU B 157 N LEU A 193 SHEET 3 AB 4 GLU B 109 VAL B 118 -1 O ILE B 114 N PHE B 158 SHEET 4 AB 4 GLU B 163 GLU B 164 1 O GLU B 163 N TYR B 110 SHEET 1 AC 5 LEU A 191 LEU A 193 0 SHEET 2 AC 5 TYR B 156 LEU B 159 -1 O GLU B 157 N LEU A 193 SHEET 3 AC 5 GLU B 109 VAL B 118 -1 O ILE B 114 N PHE B 158 SHEET 4 AC 5 VAL B 70 VAL B 78 -1 O VAL B 71 N ARG B 117 SHEET 5 AC 5 GLU B 87 ASP B 89 -1 O LEU B 88 N LEU B 75 SHEET 1 BA 2 GLU B 163 GLU B 164 0 SHEET 2 BA 2 GLU B 109 VAL B 118 1 O TYR B 110 N GLU B 163 SHEET 1 BB 5 PHE B 102 LYS B 105 0 SHEET 2 BB 5 ARG B 186 LYS B 199 1 O ASN B 195 N PHE B 102 SHEET 3 BB 5 GLY B 173 ASP B 183 -1 O GLY B 173 N ILE B 198 SHEET 4 BB 5 VAL B 123 ARG B 134 -1 O ALY B 127 N THR B 182 SHEET 5 BB 5 VAL B 137 TYR B 149 -1 O VAL B 137 N ARG B 134 LINK O1B GDP A1194 MG MG A1195 1555 1555 2.29 LINK O3B GDP A1194 MG MG A1195 1555 1555 2.88 LINK MG MG A1195 O HOH A2005 1555 1555 1.90 LINK MG MG A1195 O HOH A2004 1555 1555 2.02 LINK MG MG A1195 O THR A 37 1555 1555 2.35 LINK MG MG A1195 OG1 THR A 19 1555 1555 2.34 LINK C MET B 126 N ALY B 127 1555 1555 1.34 LINK C ALY B 127 N TYR B 128 1555 1555 1.33 LINK C ASP B 140 N ALY B 141 1555 1555 1.32 LINK C ALY B 141 N THR B 142 1555 1555 1.32 LINK MG MG B1203 O ARG B 152 1555 1555 2.60 CISPEP 1 PHE B 97 LYS B 98 0 17.29 SITE 1 AC1 18 ASP A 13 ALA A 15 CYS A 16 GLY A 17 SITE 2 AC1 18 LYS A 18 THR A 19 CYS A 20 PHE A 30 SITE 3 AC1 18 VAL A 35 LYS A 118 ASP A 120 LEU A 121 SITE 4 AC1 18 SER A 160 ALA A 161 LYS A 162 MG A1195 SITE 5 AC1 18 HOH A2003 HOH A2005 SITE 1 AC2 5 THR A 19 THR A 37 GDP A1194 HOH A2004 SITE 2 AC2 5 HOH A2005 SITE 1 AC3 2 VAL A 43 ASP A 45 SITE 1 AC4 4 ARG B 117 VAL B 118 ARG B 152 GLU B 154 CRYST1 53.100 67.640 120.230 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008317 0.00000 MASTER 432 0 6 12 22 0 9 6 0 0 0 33 END