HEADER OXIDOREDUCTASE 13-NOV-15 5FNB TITLE CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE FROM TITLE 2 PLEUROTUS ERYNGII SEPTUPLE MUTANT E37K, H39R, V160A, T184M, TITLE 3 Q202L, D213A & G330R COMPND MOL_ID: 1; COMPND 2 MOLECULE: VERSATILE PEROXIDASE VPL2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VERSATILE LIQUID PHASE PEROXIDASE 2, VERSATILE PEROXIDASE; COMPND 5 EC: 1.11.1.16, 1.11.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS ERYNGII; SOURCE 3 ORGANISM_COMMON: BOLETUS OF THE STEPPES; SOURCE 4 ORGANISM_TAXID: 5323; SOURCE 5 STRAIN: IJFM, A169; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: W3110 KEYWDS OXIDOREDUCTASE, CLASS II (FUNGAL) PEROXIDASES, PROTOPORPHYRIN IX, KEYWDS 2 ELECTRON T LIGNIN PEROXIDASE, LIGNIN DEGRADATION, MANGANESE KEYWDS 3 PEROXIDASE, INDEPENDENT OXIDATION PHENOLIC NON-PHENOLIC AROMATICS, KEYWDS 4 MNII OXIDATION, PEROXIDASE, POLYVALENT PEROXIDASE, OXIDOREDUCTASE KEYWDS 5 HYDROGEN PEROXIDE, IRON, MANGANESE, METAL-BINDING, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MEDRANO,A.ROMERO REVDAT 1 13-JUL-16 5FNB 0 JRNL AUTH V.SAEZ-JIMENEZ,S.ACEBES,E.GARCIA-RUIZ,A.ROMERO,V.GUALLAR, JRNL AUTH 2 M.ALCALDE,F.J.MEDRANO,A.T.MARTINEZ,F.J.RUIZ-DUENAS JRNL TITL UNVEILING THE BASIS OF ALKALINE STABILITY OF AN EVOLVED JRNL TITL 2 VERSATILE PEROXIDASE. JRNL REF BIOCHEM.J. V. 473 1917 2016 JRNL REFN ISSN 0264-6021 JRNL PMID 27118867 JRNL DOI 10.1042/BCJ20160248 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.792 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.015 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.33 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.12 REMARK 3 NUMBER OF REFLECTIONS : 58796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1862 REMARK 3 R VALUE (WORKING SET) : 0.1851 REMARK 3 FREE R VALUE : 0.2194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.3 REMARK 3 FREE R VALUE TEST SET COUNT : 1957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0337 - 4.3184 1.00 4390 151 0.1624 0.1723 REMARK 3 2 4.3184 - 3.4279 1.00 4207 142 0.1350 0.1704 REMARK 3 3 3.4279 - 2.9947 1.00 4199 141 0.1479 0.1664 REMARK 3 4 2.9947 - 2.7209 1.00 4126 144 0.1624 0.1906 REMARK 3 5 2.7209 - 2.5259 1.00 4117 142 0.1681 0.2214 REMARK 3 6 2.5259 - 2.3770 1.00 4102 142 0.1802 0.2187 REMARK 3 7 2.3770 - 2.2579 0.99 4079 141 0.1898 0.2250 REMARK 3 8 2.2579 - 2.1596 0.99 4079 144 0.2061 0.2607 REMARK 3 9 2.1596 - 2.0765 0.99 4062 141 0.2299 0.2676 REMARK 3 10 2.0765 - 2.0049 0.99 4084 136 0.2384 0.3127 REMARK 3 11 2.0049 - 1.9422 0.99 4020 139 0.2623 0.3641 REMARK 3 12 1.9422 - 1.8866 0.99 4003 143 0.2884 0.3061 REMARK 3 13 1.8866 - 1.8370 0.98 4010 139 0.3148 0.3290 REMARK 3 14 1.8370 - 1.7922 0.82 3361 112 0.3702 0.3873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.25 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4970 REMARK 3 ANGLE : 1.104 6799 REMARK 3 CHIRALITY : 0.069 750 REMARK 3 PLANARITY : 0.006 909 REMARK 3 DIHEDRAL : 14.054 1756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5FNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-15. REMARK 100 THE PDBE ID CODE IS EBI-65509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 2M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.80 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 13.1 REMARK 200 R MERGE (I) : 0.41 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.0 REMARK 200 R MERGE FOR SHELL (I) : 1.50 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FMU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL (PH 7.8), 5 % REMARK 280 PEG3350, 1.25 M (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 330 REMARK 465 SER A 331 REMARK 465 ASP B 175 REMARK 465 LYS B 176 REMARK 465 VAL B 177 REMARK 465 ASP B 178 REMARK 465 PRO B 179 REMARK 465 SER B 180 REMARK 465 ILE B 181 REMARK 465 PRO B 182 REMARK 465 PHE B 208 REMARK 465 PRO B 209 REMARK 465 GLY B 210 REMARK 465 THR B 211 REMARK 465 ALA B 212 REMARK 465 ALA B 213 REMARK 465 ARG B 330 REMARK 465 SER B 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 229 O HOH A 2182 2.16 REMARK 500 NE2 GLN B 219 O HOH B 2186 1.87 REMARK 500 O PRO B 329 O HOH B 2274 2.19 REMARK 500 O HOH A 2002 O HOH A 2004 2.16 REMARK 500 O HOH A 2006 O HOH A 2007 1.99 REMARK 500 O HOH A 2013 O HOH A 2026 1.87 REMARK 500 O HOH A 2020 O HOH A 2033 2.09 REMARK 500 O HOH A 2058 O HOH A 2212 2.02 REMARK 500 O HOH A 2097 O HOH A 2111 2.17 REMARK 500 O HOH A 2107 O HOH A 2176 2.05 REMARK 500 O HOH A 2126 O HOH B 2139 2.12 REMARK 500 O HOH A 2134 O HOH A 2296 2.06 REMARK 500 O HOH A 2298 O HOH A 2299 2.05 REMARK 500 O HOH A 2329 O HOH A 2330 2.06 REMARK 500 O HOH B 2006 O HOH B 2007 2.07 REMARK 500 O HOH B 2012 O HOH B 2030 2.17 REMARK 500 O HOH B 2013 O HOH B 2033 1.89 REMARK 500 O HOH B 2024 O HOH B 2077 2.12 REMARK 500 O HOH B 2029 O HOH B 2094 2.05 REMARK 500 O HOH B 2051 O HOH B 2139 2.04 REMARK 500 O HOH B 2068 O HOH B 2069 1.98 REMARK 500 O HOH B 2088 O HOH B 2216 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2007 O HOH A 2313 4545 2.06 REMARK 500 O HOH A 2055 O HOH A 2299 4545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 42.48 -102.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 169 NE2 REMARK 620 2 HEM A 500 NC 94.4 REMARK 620 3 HEM A 500 NB 94.0 90.1 REMARK 620 4 HEM A 500 ND 100.4 89.4 165.5 REMARK 620 5 HEM A 500 NA 97.3 168.0 86.4 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 169 NE2 REMARK 620 2 HEM B 500 ND 98.7 REMARK 620 3 HEM B 500 NB 94.7 166.6 REMARK 620 4 HEM B 500 NC 91.8 93.1 86.8 REMARK 620 5 HEM B 500 NA 97.8 86.4 91.5 170.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 60 O REMARK 620 2 ASP A 48 OD1 95.8 REMARK 620 3 ASP A 48 O 70.3 79.0 REMARK 620 4 ASP A 62 OD1 69.5 85.5 134.8 REMARK 620 5 SER A 64 OG 139.7 93.8 150.0 72.5 REMARK 620 6 HOH A2069 O 140.5 90.4 72.7 150.1 78.3 REMARK 620 7 HOH A2076 O 93.0 171.1 105.2 96.6 78.7 83.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 O REMARK 620 2 ASP B 48 OD1 81.6 REMARK 620 3 GLY B 60 O 70.1 97.3 REMARK 620 4 ASP B 62 OD1 134.5 84.6 69.0 REMARK 620 5 HOH B2049 O 73.0 88.2 141.4 149.6 REMARK 620 6 HOH B2053 O 106.0 168.1 93.9 95.9 85.4 REMARK 620 7 SER B 64 OG 146.7 89.5 143.1 75.7 74.7 79.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 189 OG1 REMARK 620 2 ASP A 194 OD1 69.8 REMARK 620 3 SER A 170 O 147.0 142.9 REMARK 620 4 SER A 170 OG 139.2 70.3 73.6 REMARK 620 5 ASP A 187 OD1 80.1 127.9 78.1 119.4 REMARK 620 6 ASP A 187 OD2 89.7 86.6 95.4 79.8 50.8 REMARK 620 7 THR A 189 O 70.7 127.1 80.3 144.7 76.6 126.7 REMARK 620 8 VAL A 192 O 99.2 80.3 86.6 82.1 147.7 160.5 72.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 170 OG REMARK 620 2 THR B 189 O 151.8 REMARK 620 3 THR B 189 OG1 138.5 66.7 REMARK 620 4 VAL B 192 O 83.8 78.0 100.0 REMARK 620 5 ASP B 194 OD1 67.1 129.0 73.0 79.8 REMARK 620 6 ASP B 187 OD1 117.0 73.9 79.2 149.7 127.4 REMARK 620 7 ASP B 187 OD2 75.8 122.1 93.3 159.3 89.1 48.6 REMARK 620 8 SER B 170 O 75.0 81.6 146.4 83.4 139.8 81.5 94.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE FROM REMARK 900 PLEUROTUS ERYNGII TRIPLE MUTANT E37K, H39R & G330R DBREF 5FNB A 1 329 UNP O94753 VPL2_PLEER 31 359 DBREF 5FNB B 1 329 UNP O94753 VPL2_PLEER 31 359 SEQADV 5FNB ARG A 330 UNP O94753 EXPRESSION TAG SEQADV 5FNB SER A 331 UNP O94753 EXPRESSION TAG SEQADV 5FNB LYS A 37 UNP O94753 GLU 67 ENGINEERED MUTATION SEQADV 5FNB ARG A 39 UNP O94753 HIS 69 ENGINEERED MUTATION SEQADV 5FNB ALA A 160 UNP O94753 VAL 190 ENGINEERED MUTATION SEQADV 5FNB MET A 184 UNP O94753 THR 214 ENGINEERED MUTATION SEQADV 5FNB LEU A 202 UNP O94753 GLN 232 ENGINEERED MUTATION SEQADV 5FNB ALA A 213 UNP O94753 ASP 243 ENGINEERED MUTATION SEQADV 5FNB ARG B 330 UNP O94753 EXPRESSION TAG SEQADV 5FNB SER B 331 UNP O94753 EXPRESSION TAG SEQADV 5FNB LYS B 37 UNP O94753 GLU 67 ENGINEERED MUTATION SEQADV 5FNB ARG B 39 UNP O94753 HIS 69 ENGINEERED MUTATION SEQADV 5FNB ALA B 160 UNP O94753 VAL 190 ENGINEERED MUTATION SEQADV 5FNB MET B 184 UNP O94753 THR 214 ENGINEERED MUTATION SEQADV 5FNB LEU B 202 UNP O94753 GLN 232 ENGINEERED MUTATION SEQADV 5FNB ALA B 213 UNP O94753 ASP 243 ENGINEERED MUTATION SEQRES 1 A 331 ALA THR CYS ASP ASP GLY ARG THR THR ALA ASN ALA ALA SEQRES 2 A 331 CYS CYS ILE LEU PHE PRO ILE LEU ASP ASP ILE GLN GLU SEQRES 3 A 331 ASN LEU PHE ASP GLY ALA GLN CYS GLY GLU LYS VAL ARG SEQRES 4 A 331 GLU SER LEU ARG LEU THR PHE HIS ASP ALA ILE GLY PHE SEQRES 5 A 331 SER PRO THR LEU GLY GLY GLY GLY ALA ASP GLY SER ILE SEQRES 6 A 331 ILE ALA PHE ASP THR ILE GLU THR ASN PHE PRO ALA ASN SEQRES 7 A 331 ALA GLY ILE ASP GLU ILE VAL SER ALA GLN LYS PRO PHE SEQRES 8 A 331 VAL ALA LYS HIS ASN ILE SER ALA GLY ASP PHE ILE GLN SEQRES 9 A 331 PHE ALA GLY ALA VAL GLY VAL SER ASN CYS PRO GLY GLY SEQRES 10 A 331 VAL ARG ILE PRO PHE PHE LEU GLY ARG PRO ASP ALA VAL SEQRES 11 A 331 ALA ALA SER PRO ASP HIS LEU VAL PRO GLU PRO PHE ASP SEQRES 12 A 331 SER VAL ASP SER ILE LEU ALA ARG MET GLY ASP ALA GLY SEQRES 13 A 331 PHE SER PRO ALA GLU VAL VAL TRP LEU LEU ALA SER HIS SEQRES 14 A 331 SER ILE ALA ALA ALA ASP LYS VAL ASP PRO SER ILE PRO SEQRES 15 A 331 GLY MET PRO PHE ASP SER THR PRO GLY VAL PHE ASP SER SEQRES 16 A 331 GLN PHE PHE ILE GLU THR LEU LEU LYS GLY ARG LEU PHE SEQRES 17 A 331 PRO GLY THR ALA ALA ASN LYS GLY GLU ALA GLN SER PRO SEQRES 18 A 331 LEU GLN GLY GLU ILE ARG LEU GLN SER ASP HIS LEU LEU SEQRES 19 A 331 ALA ARG ASP PRO GLN THR ALA CYS GLU TRP GLN SER MET SEQRES 20 A 331 VAL ASN ASN GLN PRO LYS ILE GLN ASN ARG PHE ALA ALA SEQRES 21 A 331 THR MET SER LYS MET ALA LEU LEU GLY GLN ASP LYS THR SEQRES 22 A 331 LYS LEU ILE ASP CYS SER ASP VAL ILE PRO THR PRO PRO SEQRES 23 A 331 ALA LEU VAL GLY ALA ALA HIS LEU PRO ALA GLY PHE SER SEQRES 24 A 331 LEU SER ASP VAL GLU GLN ALA CYS ALA ALA THR PRO PHE SEQRES 25 A 331 PRO ALA LEU THR ALA ASP PRO GLY PRO VAL THR SER VAL SEQRES 26 A 331 PRO PRO VAL PRO ARG SER SEQRES 1 B 331 ALA THR CYS ASP ASP GLY ARG THR THR ALA ASN ALA ALA SEQRES 2 B 331 CYS CYS ILE LEU PHE PRO ILE LEU ASP ASP ILE GLN GLU SEQRES 3 B 331 ASN LEU PHE ASP GLY ALA GLN CYS GLY GLU LYS VAL ARG SEQRES 4 B 331 GLU SER LEU ARG LEU THR PHE HIS ASP ALA ILE GLY PHE SEQRES 5 B 331 SER PRO THR LEU GLY GLY GLY GLY ALA ASP GLY SER ILE SEQRES 6 B 331 ILE ALA PHE ASP THR ILE GLU THR ASN PHE PRO ALA ASN SEQRES 7 B 331 ALA GLY ILE ASP GLU ILE VAL SER ALA GLN LYS PRO PHE SEQRES 8 B 331 VAL ALA LYS HIS ASN ILE SER ALA GLY ASP PHE ILE GLN SEQRES 9 B 331 PHE ALA GLY ALA VAL GLY VAL SER ASN CYS PRO GLY GLY SEQRES 10 B 331 VAL ARG ILE PRO PHE PHE LEU GLY ARG PRO ASP ALA VAL SEQRES 11 B 331 ALA ALA SER PRO ASP HIS LEU VAL PRO GLU PRO PHE ASP SEQRES 12 B 331 SER VAL ASP SER ILE LEU ALA ARG MET GLY ASP ALA GLY SEQRES 13 B 331 PHE SER PRO ALA GLU VAL VAL TRP LEU LEU ALA SER HIS SEQRES 14 B 331 SER ILE ALA ALA ALA ASP LYS VAL ASP PRO SER ILE PRO SEQRES 15 B 331 GLY MET PRO PHE ASP SER THR PRO GLY VAL PHE ASP SER SEQRES 16 B 331 GLN PHE PHE ILE GLU THR LEU LEU LYS GLY ARG LEU PHE SEQRES 17 B 331 PRO GLY THR ALA ALA ASN LYS GLY GLU ALA GLN SER PRO SEQRES 18 B 331 LEU GLN GLY GLU ILE ARG LEU GLN SER ASP HIS LEU LEU SEQRES 19 B 331 ALA ARG ASP PRO GLN THR ALA CYS GLU TRP GLN SER MET SEQRES 20 B 331 VAL ASN ASN GLN PRO LYS ILE GLN ASN ARG PHE ALA ALA SEQRES 21 B 331 THR MET SER LYS MET ALA LEU LEU GLY GLN ASP LYS THR SEQRES 22 B 331 LYS LEU ILE ASP CYS SER ASP VAL ILE PRO THR PRO PRO SEQRES 23 B 331 ALA LEU VAL GLY ALA ALA HIS LEU PRO ALA GLY PHE SER SEQRES 24 B 331 LEU SER ASP VAL GLU GLN ALA CYS ALA ALA THR PRO PHE SEQRES 25 B 331 PRO ALA LEU THR ALA ASP PRO GLY PRO VAL THR SER VAL SEQRES 26 B 331 PRO PRO VAL PRO ARG SER HET CA A 401 1 HET CA A 402 1 HET HEM A 500 43 HET CA B 401 1 HET CA B 402 1 HET HEM B 500 43 HET SO4 B1330 5 HET SO4 B1331 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CA 4(CA 2+) FORMUL 6 HOH *618(H2 O) HELIX 1 1 ASN A 11 CYS A 15 5 5 HELIX 2 2 ILE A 16 LEU A 28 1 13 HELIX 3 3 GLY A 35 ILE A 50 1 16 HELIX 4 4 GLY A 63 PHE A 68 1 6 HELIX 5 5 PHE A 68 THR A 73 1 6 HELIX 6 6 ASN A 74 ALA A 79 5 6 HELIX 7 7 ILE A 81 HIS A 95 1 15 HELIX 8 8 SER A 98 SER A 112 1 15 HELIX 9 9 SER A 144 GLY A 156 1 13 HELIX 10 10 SER A 158 LEU A 166 1 9 HELIX 11 11 ALA A 167 ILE A 171 5 5 HELIX 12 12 SER A 195 THR A 201 1 7 HELIX 13 13 GLN A 229 ASP A 237 1 9 HELIX 14 14 THR A 240 MET A 247 1 8 HELIX 15 15 ASN A 250 LEU A 267 1 18 HELIX 16 16 ASP A 271 LEU A 275 5 5 HELIX 17 17 SER A 279 ILE A 282 5 4 HELIX 18 18 SER A 299 ASP A 302 5 4 HELIX 19 19 ASN B 11 CYS B 15 5 5 HELIX 20 20 ILE B 16 LEU B 28 1 13 HELIX 21 21 GLY B 35 ILE B 50 1 16 HELIX 22 22 GLY B 63 PHE B 68 1 6 HELIX 23 23 PHE B 68 THR B 73 1 6 HELIX 24 24 ASN B 74 ALA B 79 5 6 HELIX 25 25 ILE B 81 HIS B 95 1 15 HELIX 26 26 SER B 98 SER B 112 1 15 HELIX 27 27 SER B 144 GLY B 156 1 13 HELIX 28 28 SER B 158 LEU B 166 1 9 HELIX 29 29 ALA B 167 ALA B 172 5 6 HELIX 30 30 SER B 195 THR B 201 1 7 HELIX 31 31 GLN B 229 ASP B 237 1 9 HELIX 32 32 THR B 240 MET B 247 1 8 HELIX 33 33 ASN B 250 LEU B 267 1 18 HELIX 34 34 ASP B 271 LEU B 275 5 5 HELIX 35 35 SER B 279 ILE B 282 5 4 HELIX 36 36 SER B 299 ASP B 302 5 4 SHEET 1 AA 2 PHE A 52 SER A 53 0 SHEET 2 AA 2 GLY A 57 GLY A 59 -1 O GLY A 57 N SER A 53 SHEET 1 AB 2 PHE A 123 LEU A 124 0 SHEET 2 AB 2 ILE A 276 ASP A 277 -1 O ILE A 276 N LEU A 124 SHEET 1 AC 2 ALA A 173 ALA A 174 0 SHEET 2 AC 2 MET A 184 PRO A 185 -1 O MET A 184 N ALA A 174 SHEET 1 AD 2 GLU A 217 ALA A 218 0 SHEET 2 AD 2 ARG A 227 LEU A 228 -1 O ARG A 227 N ALA A 218 SHEET 1 BA 2 PHE B 52 SER B 53 0 SHEET 2 BA 2 GLY B 57 GLY B 59 -1 O GLY B 57 N SER B 53 SHEET 1 BB 2 PHE B 123 LEU B 124 0 SHEET 2 BB 2 ILE B 276 ASP B 277 -1 O ILE B 276 N LEU B 124 SHEET 1 BC 2 GLU B 217 ALA B 218 0 SHEET 2 BC 2 ARG B 227 LEU B 228 -1 O ARG B 227 N ALA B 218 SSBOND 1 CYS A 3 CYS A 15 1555 1555 2.05 SSBOND 2 CYS A 14 CYS A 278 1555 1555 2.04 SSBOND 3 CYS A 34 CYS A 114 1555 1555 2.03 SSBOND 4 CYS A 242 CYS A 307 1555 1555 2.05 SSBOND 5 CYS B 3 CYS B 15 1555 1555 2.07 SSBOND 6 CYS B 14 CYS B 278 1555 1555 2.05 SSBOND 7 CYS B 34 CYS B 114 1555 1555 2.03 SSBOND 8 CYS B 242 CYS B 307 1555 1555 2.05 LINK NE2 HIS A 169 FE HEM A 500 1555 1555 2.25 LINK CA CA A 401 O GLY A 60 1555 1555 2.45 LINK CA CA A 401 OD1 ASP A 48 1555 1555 2.36 LINK CA CA A 401 O ASP A 48 1555 1555 2.37 LINK CA CA A 401 OD1 ASP A 62 1555 1555 2.50 LINK CA CA A 401 OG SER A 64 1555 1555 2.40 LINK CA CA A 401 O HOH A2069 1555 1555 2.40 LINK CA CA A 401 O HOH A2076 1555 1555 2.47 LINK CA CA A 402 OG1 THR A 189 1555 1555 2.51 LINK CA CA A 402 O VAL A 192 1555 1555 2.39 LINK CA CA A 402 O THR A 189 1555 1555 2.39 LINK CA CA A 402 OD2 ASP A 187 1555 1555 2.27 LINK CA CA A 402 OD1 ASP A 187 1555 1555 2.70 LINK CA CA A 402 OG SER A 170 1555 1555 2.44 LINK CA CA A 402 O SER A 170 1555 1555 2.35 LINK CA CA A 402 OD1 ASP A 194 1555 1555 2.48 LINK NE2 HIS B 169 FE HEM B 500 1555 1555 2.25 LINK CA CA B 401 OG SER B 64 1555 1555 2.47 LINK CA CA B 401 O HOH B2053 1555 1555 2.45 LINK CA CA B 401 O HOH B2049 1555 1555 2.35 LINK CA CA B 401 OD1 ASP B 62 1555 1555 2.46 LINK CA CA B 401 O GLY B 60 1555 1555 2.37 LINK CA CA B 401 OD1 ASP B 48 1555 1555 2.46 LINK CA CA B 401 O ASP B 48 1555 1555 2.40 LINK CA CA B 402 O THR B 189 1555 1555 2.34 LINK CA CA B 402 OG1 THR B 189 1555 1555 2.60 LINK CA CA B 402 O VAL B 192 1555 1555 2.37 LINK CA CA B 402 OD1 ASP B 194 1555 1555 2.38 LINK CA CA B 402 OD1 ASP B 187 1555 1555 2.80 LINK CA CA B 402 OD2 ASP B 187 1555 1555 2.42 LINK CA CA B 402 O SER B 170 1555 1555 2.33 LINK CA CA B 402 OG SER B 170 1555 1555 2.45 SITE 1 AC1 6 ASP A 48 GLY A 60 ASP A 62 SER A 64 SITE 2 AC1 6 HOH A2069 HOH A2076 SITE 1 AC2 5 SER A 170 ASP A 187 THR A 189 VAL A 192 SITE 2 AC2 5 ASP A 194 SITE 1 AC3 25 ARG A 39 GLU A 40 LEU A 42 ARG A 43 SITE 2 AC3 25 PHE A 46 GLU A 140 PRO A 141 LEU A 165 SITE 3 AC3 25 LEU A 166 SER A 168 HIS A 169 ALA A 172 SITE 4 AC3 25 ALA A 173 ALA A 174 ASP A 175 LYS A 176 SITE 5 AC3 25 VAL A 177 PHE A 186 LEU A 228 SER A 230 SITE 6 AC3 25 HOH A2058 HOH A2064 HOH A2065 HOH A2210 SITE 7 AC3 25 HOH A2214 SITE 1 AC4 6 ASP B 48 GLY B 60 ASP B 62 SER B 64 SITE 2 AC4 6 HOH B2049 HOH B2053 SITE 1 AC5 5 SER B 170 ASP B 187 THR B 189 VAL B 192 SITE 2 AC5 5 ASP B 194 SITE 1 AC6 17 ARG B 39 GLU B 40 PHE B 46 GLU B 140 SITE 2 AC6 17 PRO B 141 LEU B 166 SER B 168 HIS B 169 SITE 3 AC6 17 ALA B 172 ALA B 173 ALA B 174 LEU B 228 SITE 4 AC6 17 SER B 230 MET B 262 HOH B2037 HOH B2039 SITE 5 AC6 17 HOH B2050 SITE 1 AC7 9 ARG A 257 HOH A2275 ASP B 143 SER B 144 SITE 2 AC7 9 SER B 147 HOH B2145 HOH B2152 HOH B2275 SITE 3 AC7 9 HOH B2276 SITE 1 AC8 5 ASP B 23 PHE B 91 LYS B 94 HOH B2277 SITE 2 AC8 5 HOH B2278 CRYST1 55.060 106.010 107.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009294 0.00000 MASTER 417 0 8 36 14 0 25 6 0 0 0 52 END