HEADER DNA BINDING PROTEIN/DNA 04-DEC-15 5F56 TITLE STRUCTURE OF RECJ COMPLEXED WITH DNA AND SSB-CT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*TP*GP*AP*TP*GP*GP*CP*A)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ALA-ASP-LEU-PRO-PHE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 ATCC: ATCC13939; SOURCE 5 GENE: RECJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS RECF PATHWAY, DNA END RESECTION, TWO-METAL-ION CATALYSIS, SINGLE- KEYWDS 2 STRAND-DNA, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,Y.HUA,K.CHENG REVDAT 3 24-AUG-16 5F56 1 JRNL REVDAT 2 22-JUN-16 5F56 1 REMARK REVDAT 1 15-JUN-16 5F56 0 JRNL AUTH K.CHENG,H.XU,X.CHEN,L.WANG,B.TIAN,Y.ZHAO,Y.HUA JRNL TITL STRUCTURAL BASIS FOR DNA 5 -END RESECTION BY RECJ JRNL REF ELIFE V. 5 14294 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27058167 JRNL DOI 10.7554/ELIFE.14294 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 45294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.3609 - 5.7240 0.95 2850 139 0.1854 0.1976 REMARK 3 2 5.7240 - 4.5706 0.95 2759 158 0.1859 0.1963 REMARK 3 3 4.5706 - 4.0009 0.95 2707 141 0.1676 0.1685 REMARK 3 4 4.0009 - 3.6388 0.95 2701 142 0.1894 0.1980 REMARK 3 5 3.6388 - 3.3800 0.95 2691 140 0.2189 0.2421 REMARK 3 6 3.3800 - 3.1820 0.95 2657 154 0.2468 0.2453 REMARK 3 7 3.1820 - 3.0235 0.95 2686 145 0.2615 0.2954 REMARK 3 8 3.0235 - 2.8925 0.94 2655 161 0.2772 0.2871 REMARK 3 9 2.8925 - 2.7816 0.95 2652 154 0.2892 0.2929 REMARK 3 10 2.7816 - 2.6860 0.95 2648 150 0.2922 0.3337 REMARK 3 11 2.6860 - 2.6023 0.94 2645 162 0.3055 0.3213 REMARK 3 12 2.6023 - 2.5282 0.95 2673 128 0.3050 0.3526 REMARK 3 13 2.5282 - 2.4618 0.96 2694 110 0.3021 0.2607 REMARK 3 14 2.4618 - 2.4019 0.95 2653 149 0.3071 0.3248 REMARK 3 15 2.4019 - 2.3474 0.96 2676 116 0.3098 0.2825 REMARK 3 16 2.3474 - 2.2976 0.93 2568 131 0.3081 0.3213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0500 REMARK 3 OPERATOR: -H,-K,L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5733 REMARK 3 ANGLE : 1.464 7858 REMARK 3 CHIRALITY : 0.100 885 REMARK 3 PLANARITY : 0.010 1012 REMARK 3 DIHEDRAL : 22.142 2109 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESIDUE 2 THROUGH 704)) OR (CHAIN B REMARK 3 AND (RESIDUE 297 THROUGH 301)) OR (CHAIN C AND REMARK 3 (RESIDUE 1 THROUGH 9)) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4602 342.5157 501.8236 REMARK 3 T TENSOR REMARK 3 T11: 0.4261 T22: 0.3442 REMARK 3 T33: 0.3481 T12: -0.0684 REMARK 3 T13: 0.0111 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.4325 L22: 0.4961 REMARK 3 L33: 0.8730 L12: -0.3380 REMARK 3 L13: 0.4582 L23: -0.1035 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: 0.1134 S13: 0.0263 REMARK 3 S21: -0.0990 S22: -0.0098 S23: -0.0116 REMARK 3 S31: -0.0688 S32: 0.0403 S33: 0.0419 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000216041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZXP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, MNCL2, LI2SO4, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.74667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.37333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.37333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.74667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 705 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 160 CG ND1 CD2 CE1 NE2 REMARK 470 DC C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 389 NH2 ARG A 416 1.72 REMARK 500 O GLU A 386 NH1 ARG A 416 1.85 REMARK 500 O THR A 133 OG1 THR A 157 1.93 REMARK 500 O LEU A 538 OG1 THR A 541 1.96 REMARK 500 O PRO A 330 NH1 ARG A 360 2.01 REMARK 500 OG1 THR A 474 O ASP A 501 2.03 REMARK 500 NH1 ARG A 41 OD2 ASP A 181 2.04 REMARK 500 O ASP A 482 O GLU A 498 2.10 REMARK 500 OG1 THR A 293 OE1 GLU A 298 2.11 REMARK 500 NH1 ARG A 550 O TYR A 669 2.12 REMARK 500 O LYS A 695 N GLU A 698 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 162 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 111 -82.28 -106.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 804 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD2 REMARK 620 2 ASP A 81 OD1 86.5 REMARK 620 3 ASP A 81 OD2 93.5 59.2 REMARK 620 4 ASP A 135 OD2 102.1 96.0 150.0 REMARK 620 5 DT C 2 OP1 94.2 151.6 92.5 111.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 805 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 ASP A 135 OD1 79.3 REMARK 620 3 HIS A 159 NE2 94.4 87.1 REMARK 620 4 ASP A 223 OD2 91.2 168.1 86.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F54 RELATED DB: PDB REMARK 900 RELATED ID: 5F55 RELATED DB: PDB DBREF 5F56 A 1 705 UNP D0EM60 D0EM60_DEIRD 1 705 DBREF 5F56 C 1 9 PDB 5F56 5F56 1 9 DBREF 5F56 B 297 301 PDB 5F56 5F56 297 301 SEQRES 1 A 705 MET SER ARG PRO ALA HIS TRP LEU LEU ALA PRO PRO ALA SEQRES 2 A 705 SER ARG ASP ALA LEU LEU ALA THR MET ARG GLU TRP GLN SEQRES 3 A 705 VAL SER PRO PRO VAL ALA GLN VAL LEU CYS GLY ARG ASP SEQRES 4 A 705 LEU ARG THR GLU LEU LEU ALA LEU PRO LEU GLU LEU THR SEQRES 5 A 705 PRO ASN PRO ALA LEU ARG GLU ALA ALA ARG HIS ILE VAL SEQRES 6 A 705 ALA ALA VAL ARG GLU GLY LYS ARG ILE ARG ILE HIS GLY SEQRES 7 A 705 ASP TYR ASP ALA ASP GLY VAL SER ALA THR ALA THR LEU SEQRES 8 A 705 VAL LEU GLY LEU ARG ALA ILE GLY ALA ASN VAL HIS GLY SEQRES 9 A 705 PHE ILE PRO HIS ARG LEU ASN GLU GLY TYR GLY ILE HIS SEQRES 10 A 705 PRO ASP ARG VAL PRO GLU HIS ALA ALA ALA ALA ASP LEU SEQRES 11 A 705 VAL VAL THR VAL ASP CYS GLY VAL SER ASN LEU ASP GLU SEQRES 12 A 705 VAL LYS SER LEU LEU ALA THR GLY THR GLU VAL VAL VAL SEQRES 13 A 705 THR ASP HIS HIS ALA PRO GLY GLU ASN PHE PRO GLU CYS SEQRES 14 A 705 LEU VAL VAL HIS PRO HIS LEU THR PRO ASP TYR ASP PRO SEQRES 15 A 705 ASP ARG HIS ASN LEU THR GLY ALA GLY VAL ALA TYR HIS SEQRES 16 A 705 LEU LEU TRP ALA VAL TYR GLU GLU LEU GLY ARG PRO GLU SEQRES 17 A 705 PRO ARG ALA LEU LEU PRO LEU ALA THR LEU GLY THR VAL SEQRES 18 A 705 ALA ASP VAL ALA PRO LEU LEU GLY GLU ASN ARG ALA LEU SEQRES 19 A 705 VAL ARG ALA GLY LEU ALA GLU MET ALA ARG THR GLU LEU SEQRES 20 A 705 PRO GLY LEU ARG ALA LEU MET ASN GLU LYS ARG VAL ARG SEQRES 21 A 705 GLN PRO THR ALA ARG ASP VAL ALA PHE ILE LEU ALA PRO SEQRES 22 A 705 ARG ILE ASN ALA ALA GLY ARG MET GLY GLU ALA ASP ARG SEQRES 23 A 705 ALA LEU GLU LEU LEU THR THR PRO SER ASP HIS GLU ALA SEQRES 24 A 705 LYS SER LEU ALA ALA TYR LEU GLU ILE ARG ASN GLN GLU SEQRES 25 A 705 ARG ARG LYS ILE GLN ASP ASP MET PHE ALA GLN ALA LEU SEQRES 26 A 705 GLN LEU ALA ASP PRO ASN ASP PRO ALA LEU VAL LEU THR SEQRES 27 A 705 HIS ASP ASP TRP HIS ALA GLY VAL MET GLY ILE VAL ALA SEQRES 28 A 705 SER LYS LEU VAL GLU THR PHE ASN ARG PRO VAL TYR ILE SEQRES 29 A 705 VAL ALA GLN GLY LYS GLY SER VAL ARG SER THR PRO GLY SEQRES 30 A 705 ILE SER ALA VAL GLN GLY LEU ARG GLU SER ARG ASP LEU SEQRES 31 A 705 LEU GLY ARG PHE GLY GLY HIS PRO GLY ALA ALA GLY PHE SEQRES 32 A 705 SER LEU ASP PRO GLN ASN PHE GLY ALA LEU ARG GLU ARG SEQRES 33 A 705 ILE HIS GLY TYR VAL ARG GLN PHE PRO THR PRO VAL PRO SEQRES 34 A 705 ALA VAL ARG LEU ASP ALA PRO LEU PRO VAL ALA ALA LEU SEQRES 35 A 705 THR PRO GLU LEU LEU SER GLU LEU SER ILE LEU GLU PRO SEQRES 36 A 705 PHE GLY GLU GLY ASN PRO ARG PRO LEU TRP HIS LEU ARG SEQRES 37 A 705 GLY PRO LEU THR ASP THR ARG LEU VAL GLY LYS GLN GLY SEQRES 38 A 705 ASP VAL LEU GLN PHE ARG PHE GLY GLY VAL LYS GLY MET SEQRES 39 A 705 LYS TYR SER GLU ARG ASP ASP ALA ALA GLY GLU ARG ASP SEQRES 40 A 705 VAL ALA ALA GLU LEU ALA LEU ASN GLU TRP LYS GLY ARG SEQRES 41 A 705 THR SER LEU GLU LEU HIS ALA ALA ALA LEU ARG PRO LEU SEQRES 42 A 705 ALA PRO LEU ALA LEU ALA GLY THR GLU GLU GLY LEU PRO SEQRES 43 A 705 THR LEU PRO ARG LEU ASN PRO ARG GLU ALA MET THR PHE SEQRES 44 A 705 LEU LYS THR GLY ALA ALA ALA TYR ALA GLU GLN GLY VAL SEQRES 45 A 705 ALA THR TYR LEU ARG ASP ASN VAL PRO GLY LEU THR LEU SEQRES 46 A 705 LEU ASP THR ASN ALA PRO HIS PRO GLY GLY ASP LEU ILE SEQRES 47 A 705 LEU TYR GLY LEU PRO PRO GLU SER ALA LEU ARG ARG TRP SEQRES 48 A 705 LEU HIS GLU ALA GLN GLU GLN GLY GLY ARG VAL ALA PHE SEQRES 49 A 705 ALA LEU GLY PRO LYS THR LEU ALA GLU LEU ASP ALA ALA SEQRES 50 A 705 LEU THR LEU ALA LYS LEU LEU PRO ASP SER HIS THR GLU SEQRES 51 A 705 ALA ALA GLN GLU ALA ALA ALA ASP ALA TYR ARG SER TRP SEQRES 52 A 705 GLN TRP ALA HIS HIS TYR ARG VAL LEU ASN ASP ALA GLY SEQRES 53 A 705 TRP SER ALA SER VAL TYR ALA MET LEU GLY LEU PRO VAL SEQRES 54 A 705 PRO ALA ALA LEU PRO LYS ALA ALA GLU ALA LEU ALA LEU SEQRES 55 A 705 ALA ALA GLY SEQRES 1 C 9 DC DT DG DA DT DG DG DC DA SEQRES 1 B 5 ALA ASP LEU PRO PHE HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HET MN A 804 1 HET MN A 805 1 HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 MN 2(MN 2+) FORMUL 9 HOH *142(H2 O) HELIX 1 AA1 SER A 14 GLN A 26 1 13 HELIX 2 AA2 SER A 28 ARG A 38 1 11 HELIX 3 AA3 ARG A 41 LEU A 47 1 7 HELIX 4 AA4 ASN A 54 GLU A 70 1 17 HELIX 5 AA5 ASP A 81 ALA A 97 1 17 HELIX 6 AA6 HIS A 117 ASP A 119 5 3 HELIX 7 AA7 ARG A 120 ALA A 128 1 9 HELIX 8 AA8 ASN A 140 THR A 150 1 11 HELIX 9 AA9 HIS A 173 THR A 177 5 5 HELIX 10 AB1 THR A 188 LEU A 204 1 17 HELIX 11 AB2 PRO A 209 ALA A 211 5 3 HELIX 12 AB3 LEU A 212 ASP A 223 1 12 HELIX 13 AB4 LEU A 228 ARG A 244 1 17 HELIX 14 AB5 LEU A 247 LYS A 257 1 11 HELIX 15 AB6 THR A 263 ILE A 270 1 8 HELIX 16 AB7 ILE A 270 MET A 281 1 12 HELIX 17 AB8 GLU A 283 THR A 293 1 11 HELIX 18 AB9 SER A 295 ALA A 328 1 34 HELIX 19 AC1 HIS A 343 GLY A 345 5 3 HELIX 20 AC2 VAL A 346 ASN A 359 1 14 HELIX 21 AC3 SER A 379 GLU A 386 1 8 HELIX 22 AC4 SER A 387 ASP A 389 5 3 HELIX 23 AC5 ASN A 409 GLN A 423 1 15 HELIX 24 AC6 PRO A 438 LEU A 442 5 5 HELIX 25 AC7 THR A 443 LEU A 450 1 8 HELIX 26 AC8 SER A 451 GLU A 454 5 4 HELIX 27 AC9 ASN A 552 THR A 562 1 11 HELIX 28 AD1 GLU A 569 VAL A 580 1 12 HELIX 29 AD2 PRO A 604 GLY A 619 1 16 HELIX 30 AD3 GLY A 627 ALA A 637 1 11 HELIX 31 AD4 THR A 639 LEU A 644 1 6 HELIX 32 AD5 THR A 649 LEU A 672 1 24 HELIX 33 AD6 ASN A 673 LEU A 685 1 13 HELIX 34 AD7 LEU A 693 ALA A 703 1 11 SHEET 1 AA1 3 ALA A 430 LEU A 433 0 SHEET 2 AA1 3 HIS A 6 LEU A 9 1 N LEU A 8 O LEU A 433 SHEET 3 AA1 3 ALA A 537 LEU A 538 1 O ALA A 537 N LEU A 9 SHEET 1 AA2 5 ASN A 101 PHE A 105 0 SHEET 2 AA2 5 ARG A 73 HIS A 77 1 N ILE A 76 O PHE A 105 SHEET 3 AA2 5 LEU A 130 THR A 133 1 O VAL A 132 N HIS A 77 SHEET 4 AA2 5 GLU A 153 THR A 157 1 O GLU A 153 N VAL A 131 SHEET 5 AA2 5 LEU A 170 VAL A 172 1 O VAL A 172 N VAL A 156 SHEET 1 AA3 5 LEU A 335 THR A 338 0 SHEET 2 AA3 5 VAL A 362 ALA A 366 1 O TYR A 363 N LEU A 335 SHEET 3 AA3 5 LYS A 369 ARG A 373 -1 O LYS A 369 N ALA A 366 SHEET 4 AA3 5 ALA A 400 LEU A 405 -1 O PHE A 403 N GLY A 370 SHEET 5 AA3 5 LEU A 391 GLY A 396 -1 N GLY A 395 O GLY A 402 SHEET 1 AA4 7 ALA A 435 PRO A 436 0 SHEET 2 AA4 7 TRP A 465 VAL A 477 1 O HIS A 466 N ALA A 435 SHEET 3 AA4 7 GLY A 504 ASN A 515 -1 O GLY A 504 N LEU A 471 SHEET 4 AA4 7 SER A 522 PRO A 532 -1 O GLU A 524 N ALA A 513 SHEET 5 AA4 7 VAL A 491 LYS A 495 1 N MET A 494 O ALA A 527 SHEET 6 AA4 7 VAL A 483 PHE A 488 -1 N PHE A 486 O GLY A 493 SHEET 7 AA4 7 TRP A 465 VAL A 477 -1 N ARG A 475 O GLN A 485 SHEET 1 AA5 3 ALA A 565 TYR A 567 0 SHEET 2 AA5 3 ASP A 596 LEU A 599 1 O ILE A 598 N ALA A 565 SHEET 3 AA5 3 ARG A 621 PHE A 624 1 O ALA A 623 N LEU A 599 LINK OD2 ASP A 79 MN MN A 804 1555 1555 2.18 LINK OD1 ASP A 81 MN MN A 804 1555 1555 2.23 LINK OD2 ASP A 81 MN MN A 804 1555 1555 2.16 LINK OD2 ASP A 83 MN MN A 805 1555 1555 2.21 LINK OD1 ASP A 135 MN MN A 805 1555 1555 2.31 LINK OD2 ASP A 135 MN MN A 804 1555 1555 2.17 LINK NE2 HIS A 159 MN MN A 805 1555 1555 2.16 LINK OD2 ASP A 223 MN MN A 805 1555 1555 2.34 LINK OP1 DT C 2 MN MN A 804 1555 1555 2.64 CISPEP 1 GLU A 454 PRO A 455 0 0.76 SITE 1 AC1 4 PRO A 438 VAL A 439 TRP A 663 HOH A 942 SITE 1 AC2 7 ARG A 109 GLY A 348 SER A 371 ARG A 373 SITE 2 AC2 7 HOH A 918 HOH A 997 DC C 1 SITE 1 AC3 2 SER A 606 ARG A 609 SITE 1 AC4 4 ASP A 79 ASP A 81 ASP A 135 DT C 2 SITE 1 AC5 5 ASP A 83 ASP A 135 HIS A 159 ASP A 223 SITE 2 AC5 5 DT C 2 CRYST1 102.220 102.220 166.120 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009783 0.005648 0.000000 0.00000 SCALE2 0.000000 0.011296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006020 0.00000 MASTER 355 0 5 34 23 0 7 6 0 0 0 57 END