HEADER TRANSFERASE 03-DEC-15 5F3Z TITLE DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO PC-79-SH52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2762-3390; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11069; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RDRP INHIBITOR, DENGUE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.NOBLE REVDAT 3 08-JUN-16 5F3Z 1 JRNL REVDAT 2 02-MAR-16 5F3Z 1 REMARK REVDAT 1 24-FEB-16 5F3Z 0 JRNL AUTH C.G.NOBLE,S.P.LIM,R.ARORA,F.YOKOKAWA,S.NILAR,C.C.SEH, JRNL AUTH 2 S.K.WRIGHT,T.E.BENSON,P.W.SMITH,P.Y.SHI JRNL TITL A CONSERVED POCKET IN THE DENGUE VIRUS POLYMERASE IDENTIFIED JRNL TITL 2 THROUGH FRAGMENT-BASED SCREENING JRNL REF J.BIOL.CHEM. V. 291 8541 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26872970 JRNL DOI 10.1074/JBC.M115.710731 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 55362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3895 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2372 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3709 REMARK 3 BIN R VALUE (WORKING SET) : 0.2359 REMARK 3 BIN FREE R VALUE : 0.2652 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.78 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4762 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 437 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.73990 REMARK 3 B22 (A**2) : -15.45250 REMARK 3 B33 (A**2) : 8.71260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.150 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.144 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.135 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4922 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6671 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1742 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 126 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 706 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4922 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 620 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5913 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.14 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5F3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000215978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 118.982 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43210 REMARK 200 R SYM FOR SHELL (I) : 0.69500 REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER-TNT BUSTER 2.11.5 REMARK 200 STARTING MODEL: 4HHJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 25% PEG 550 MME, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.92000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.92000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 80.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.11000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 80.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.11000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.92000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 80.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.11000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.92000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 80.65000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.11000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1428 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 HIS A 268 REMARK 465 MET A 269 REMARK 465 LEU A 270 REMARK 465 ASP A 271 REMARK 465 MET A 408 REMARK 465 GLY A 409 REMARK 465 ALA A 410 REMARK 465 VAL A 411 REMARK 465 PHE A 412 REMARK 465 THR A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 ASN A 416 REMARK 465 GLN A 417 REMARK 465 TRP A 418 REMARK 465 MET A 454 REMARK 465 GLY A 455 REMARK 465 LYS A 456 REMARK 465 ARG A 457 REMARK 465 GLU A 458 REMARK 465 LYS A 459 REMARK 465 LYS A 460 REMARK 465 LEU A 461 REMARK 465 GLY A 462 REMARK 465 GLU A 463 REMARK 465 PHE A 464 REMARK 465 GLY A 465 REMARK 465 LYS A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 GLY A 469 REMARK 465 PRO A 884 REMARK 465 SER A 885 REMARK 465 MET A 886 REMARK 465 LYS A 887 REMARK 465 ARG A 888 REMARK 465 PHE A 889 REMARK 465 ARG A 890 REMARK 465 LYS A 891 REMARK 465 GLU A 892 REMARK 465 GLU A 893 REMARK 465 GLU A 894 REMARK 465 SER A 895 REMARK 465 GLU A 896 REMARK 465 GLY A 897 REMARK 465 ALA A 898 REMARK 465 ILE A 899 REMARK 465 TRP A 900 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 480 CG1 CG2 REMARK 470 THR A 585 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 333 44.35 -95.27 REMARK 500 MET A 342 -104.56 -80.33 REMARK 500 THR A 343 103.59 57.06 REMARK 500 LYS A 357 -52.09 -128.69 REMARK 500 THR A 404 36.17 -86.69 REMARK 500 ASN A 405 -41.49 -133.29 REMARK 500 ALA A 406 -129.67 -112.20 REMARK 500 TYR A 503 -52.98 73.93 REMARK 500 GLN A 597 164.33 74.14 REMARK 500 LYS A 686 59.74 -91.88 REMARK 500 SER A 791 -151.91 62.36 REMARK 500 ILE A 818 -73.53 -114.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1537 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 437 OE1 REMARK 620 2 HIS A 441 NE2 88.9 REMARK 620 3 CYS A 446 SG 103.2 116.1 REMARK 620 4 CYS A 449 SG 125.7 108.5 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 712 NE2 REMARK 620 2 HIS A 714 NE2 95.5 REMARK 620 3 CYS A 728 SG 105.9 107.1 REMARK 620 4 CYS A 847 SG 101.6 119.7 122.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5V5 A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5F3T RELATED DB: PDB REMARK 900 RELATED ID: 5F41 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 374 GLU IS A NATURALLY OCCURRED MUTATION IN THE VIRAL REMARK 999 SEQUENCE. DBREF 5F3Z A 272 900 UNP Q6DLV0 Q6DLV0_9FLAV 2762 3390 SEQADV 5F3Z GLY A 266 UNP Q6DLV0 EXPRESSION TAG SEQADV 5F3Z SER A 267 UNP Q6DLV0 EXPRESSION TAG SEQADV 5F3Z HIS A 268 UNP Q6DLV0 EXPRESSION TAG SEQADV 5F3Z MET A 269 UNP Q6DLV0 EXPRESSION TAG SEQADV 5F3Z LEU A 270 UNP Q6DLV0 EXPRESSION TAG SEQADV 5F3Z ASP A 271 UNP Q6DLV0 EXPRESSION TAG SEQADV 5F3Z GLU A 374 UNP Q6DLV0 GLY 2864 VARIANT SEQRES 1 A 635 GLY SER HIS MET LEU ASP ASN MET ASP VAL ILE GLY GLU SEQRES 2 A 635 ARG ILE LYS ARG ILE LYS GLU GLU HIS ASN SER THR TRP SEQRES 3 A 635 HIS TYR ASP ASP GLU ASN PRO TYR LYS THR TRP ALA TYR SEQRES 4 A 635 HIS GLY SER TYR GLU VAL LYS ALA THR GLY SER ALA SER SEQRES 5 A 635 SER MET ILE ASN GLY VAL VAL LYS LEU LEU THR LYS PRO SEQRES 6 A 635 TRP ASP VAL VAL PRO MET VAL THR GLN MET ALA MET THR SEQRES 7 A 635 ASP THR THR PRO PHE GLY GLN GLN ARG VAL PHE LYS GLU SEQRES 8 A 635 LYS VAL ASP THR ARG THR PRO ARG PRO LEU PRO GLY THR SEQRES 9 A 635 ARG LYS VAL MET GLU ILE THR ALA GLU TRP LEU TRP ARG SEQRES 10 A 635 THR LEU GLY ARG ASN LYS ARG PRO ARG LEU CYS THR ARG SEQRES 11 A 635 GLU GLU PHE THR LYS LYS VAL ARG THR ASN ALA ALA MET SEQRES 12 A 635 GLY ALA VAL PHE THR GLU GLU ASN GLN TRP ASP SER ALA SEQRES 13 A 635 LYS ALA ALA VAL GLU ASP GLU GLU PHE TRP LYS LEU VAL SEQRES 14 A 635 ASP ARG GLU ARG GLU LEU HIS LYS LEU GLY LYS CYS GLY SEQRES 15 A 635 SER CYS VAL TYR ASN MET MET GLY LYS ARG GLU LYS LYS SEQRES 16 A 635 LEU GLY GLU PHE GLY LYS ALA LYS GLY SER ARG ALA ILE SEQRES 17 A 635 TRP TYR MET TRP LEU GLY VAL ARG TYR LEU GLU PHE GLU SEQRES 18 A 635 ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP PHE SER ARG SEQRES 19 A 635 GLU ASN SER TYR SER GLY VAL GLU GLY GLU GLY LEU HIS SEQRES 20 A 635 LYS LEU GLY TYR ILE LEU ARG ASP ILE SER LYS ILE PRO SEQRES 21 A 635 GLY GLY ALA MET TYR ALA ASP ASP THR ALA GLY TRP ASP SEQRES 22 A 635 THR ARG ILE THR GLU ASP ASP LEU HIS ASN GLU GLU LYS SEQRES 23 A 635 ILE ILE GLN GLN MET ASP PRO GLU HIS ARG GLN LEU ALA SEQRES 24 A 635 ASN ALA ILE PHE LYS LEU THR TYR GLN ASN LYS VAL VAL SEQRES 25 A 635 LYS VAL GLN ARG PRO THR PRO THR GLY THR VAL MET ASP SEQRES 26 A 635 ILE ILE SER ARG LYS ASP GLN ARG GLY SER GLY GLN VAL SEQRES 27 A 635 GLY THR TYR GLY LEU ASN THR PHE THR ASN MET GLU ALA SEQRES 28 A 635 GLN LEU VAL ARG GLN MET GLU GLY GLU GLY VAL LEU THR SEQRES 29 A 635 LYS ALA ASP LEU GLU ASN PRO HIS LEU LEU GLU LYS LYS SEQRES 30 A 635 ILE THR GLN TRP LEU GLU THR LYS GLY VAL GLU ARG LEU SEQRES 31 A 635 LYS ARG MET ALA ILE SER GLY ASP ASP CYS VAL VAL LYS SEQRES 32 A 635 PRO ILE ASP ASP ARG PHE ALA ASN ALA LEU LEU ALA LEU SEQRES 33 A 635 ASN ASP MET GLY LYS VAL ARG LYS ASP ILE PRO GLN TRP SEQRES 34 A 635 GLN PRO SER LYS GLY TRP HIS ASP TRP GLN GLN VAL PRO SEQRES 35 A 635 PHE CYS SER HIS HIS PHE HIS GLU LEU ILE MET LYS ASP SEQRES 36 A 635 GLY ARG LYS LEU VAL VAL PRO CYS ARG PRO GLN ASP GLU SEQRES 37 A 635 LEU ILE GLY ARG ALA ARG ILE SER GLN GLY ALA GLY TRP SEQRES 38 A 635 SER LEU ARG GLU THR ALA CYS LEU GLY LYS ALA TYR ALA SEQRES 39 A 635 GLN MET TRP SER LEU MET TYR PHE HIS ARG ARG ASP LEU SEQRES 40 A 635 ARG LEU ALA SER ASN ALA ILE CYS SER ALA VAL PRO VAL SEQRES 41 A 635 HIS TRP VAL PRO THR SER ARG THR THR TRP SER ILE HIS SEQRES 42 A 635 ALA HIS HIS GLN TRP MET THR THR GLU ASP MET LEU THR SEQRES 43 A 635 VAL TRP ASN ARG VAL TRP ILE GLU GLU ASN PRO TRP MET SEQRES 44 A 635 GLU ASP LYS THR PRO VAL THR THR TRP GLU ASN VAL PRO SEQRES 45 A 635 TYR LEU GLY LYS ARG GLU ASP GLN TRP CYS GLY SER LEU SEQRES 46 A 635 ILE GLY LEU THR SER ARG ALA THR TRP ALA GLN ASN ILE SEQRES 47 A 635 PRO THR ALA ILE GLN GLN VAL ARG SER LEU ILE GLY ASN SEQRES 48 A 635 GLU GLU PHE LEU ASP TYR MET PRO SER MET LYS ARG PHE SEQRES 49 A 635 ARG LYS GLU GLU GLU SER GLU GLY ALA ILE TRP HET ZN A1001 1 HET ZN A1002 1 HET 5V5 A1003 17 HETNAM ZN ZINC ION HETNAM 5V5 2-(4-METHOXY-3-THIOPHEN-2-YL-PHENYL)ETHANOIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 5V5 C13 H12 O3 S FORMUL 5 HOH *437(H2 O) HELIX 1 AA1 ASN A 272 HIS A 287 1 16 HELIX 2 AA2 ASN A 321 LEU A 327 1 7 HELIX 3 AA3 THR A 328 VAL A 333 5 6 HELIX 4 AA4 VAL A 334 ALA A 341 1 8 HELIX 5 AA5 THR A 346 LYS A 357 1 12 HELIX 6 AA6 LEU A 366 GLY A 385 1 20 HELIX 7 AA7 THR A 394 THR A 404 1 11 HELIX 8 AA8 SER A 420 GLU A 426 1 7 HELIX 9 AA9 ASP A 427 LEU A 443 1 17 HELIX 10 AB1 ARG A 471 GLY A 489 1 19 HELIX 11 AB2 GLY A 489 ASP A 494 1 6 HELIX 12 AB3 SER A 498 TYR A 503 1 6 HELIX 13 AB4 GLY A 510 LYS A 523 1 14 HELIX 14 AB5 GLY A 536 ILE A 541 5 6 HELIX 15 AB6 THR A 542 GLU A 550 1 9 HELIX 16 AB7 LYS A 551 MET A 556 5 6 HELIX 17 AB8 ASP A 557 TYR A 572 1 16 HELIX 18 AB9 GLY A 604 GLU A 625 1 22 HELIX 19 AC1 THR A 629 ASN A 635 1 7 HELIX 20 AC2 GLU A 640 ARG A 657 1 18 HELIX 21 AC3 ASP A 671 ALA A 677 5 7 HELIX 22 AC4 LEU A 678 MET A 684 1 7 HELIX 23 AC5 ASP A 702 VAL A 706 5 5 HELIX 24 AC6 PRO A 730 ARG A 739 1 10 HELIX 25 AC7 SER A 747 TYR A 766 1 20 HELIX 26 AC8 ARG A 769 VAL A 783 1 15 HELIX 27 AC9 ASP A 808 ILE A 818 1 11 HELIX 28 AD1 THR A 832 VAL A 836 5 5 HELIX 29 AD2 GLY A 840 CYS A 847 1 8 HELIX 30 AD3 LEU A 853 GLY A 875 1 23 SHEET 1 AA1 4 ALA A 303 VAL A 310 0 SHEET 2 AA1 4 GLY A 586 ARG A 594 -1 O ILE A 591 N HIS A 305 SHEET 3 AA1 4 LYS A 575 THR A 583 -1 N THR A 583 O GLY A 586 SHEET 4 AA1 4 TYR A 451 ASN A 452 1 N TYR A 451 O VAL A 576 SHEET 1 AA2 2 MET A 658 SER A 661 0 SHEET 2 AA2 2 ASP A 664 VAL A 667 -1 O ASP A 664 N SER A 661 SHEET 1 AA3 2 HIS A 712 ILE A 717 0 SHEET 2 AA3 2 LYS A 723 CYS A 728 -1 O LEU A 724 N LEU A 716 LINK OE1 GLU A 437 ZN ZN A1002 1555 1555 2.17 LINK NE2 HIS A 441 ZN ZN A1002 1555 1555 2.13 LINK SG CYS A 446 ZN ZN A1002 1555 1555 2.24 LINK SG CYS A 449 ZN ZN A1002 1555 1555 2.26 LINK NE2 HIS A 712 ZN ZN A1001 1555 1555 2.05 LINK NE2 HIS A 714 ZN ZN A1001 1555 1555 2.11 LINK SG CYS A 728 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 847 ZN ZN A1001 1555 1555 2.28 SITE 1 AC1 4 HIS A 712 HIS A 714 CYS A 728 CYS A 847 SITE 1 AC2 4 GLU A 437 HIS A 441 CYS A 446 CYS A 449 SITE 1 AC3 12 LEU A 511 CYS A 709 ARG A 729 MET A 761 SITE 2 AC3 12 THR A 794 SER A 796 HIS A 798 ALA A 799 SITE 3 AC3 12 TRP A 803 HOH A1167 HOH A1171 HOH A1290 CRYST1 161.300 176.220 57.840 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017289 0.00000 MASTER 385 0 3 30 8 0 5 6 0 0 0 49 END