HEADER RNA BINDING PROTEIN 05-NOV-15 5ELR TITLE STRUCTURE OF THE KH-QUA2 DOMAIN OF T-STAR IN COMPLEX WITH AAUAAU RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*AP*AP*UP*AP*AP*U)-3'); COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: RNA BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION- COMPND 8 ASSOCIATED PROTEIN 3; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 50-183; COMPND 11 SYNONYM: T-STAR KH - QUA2, RNA-BINDING PROTEIN T-STAR,SAM68-LIKE COMPND 12 MAMMALIAN PROTEIN 2,SLM-2,SAM68-LIKE PHOSPHOTYROSINE PROTEIN; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: N-TERMINUS GA RESIDUES FROM TAG. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: KHDRBS3, SALP, SLM2; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN - RNA COMPLEXES, STAR PROTEIN, ALTERNATIVE SPLICING, KH KEYWDS 2 DOMAIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DOMINGUEZ,M.FERACCI REVDAT 3 13-SEP-17 5ELR 1 REMARK REVDAT 2 27-JAN-16 5ELR 1 JRNL REVDAT 1 13-JAN-16 5ELR 0 JRNL AUTH M.FERACCI,J.N.FOOT,S.N.GRELLSCHEID,M.DANILENKO,R.STEHLE, JRNL AUTH 2 O.GONCHAR,H.S.KANG,C.DALGLIESH,N.H.MEYER,Y.LIU,A.LAHAT, JRNL AUTH 3 M.SATTLER,I.C.EPERON,D.J.ELLIOTT,C.DOMINGUEZ JRNL TITL STRUCTURAL BASIS OF RNA RECOGNITION AND DIMERIZATION BY THE JRNL TITL 2 STAR PROTEINS T-STAR AND SAM68. JRNL REF NAT COMMUN V. 7 10355 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 26758068 JRNL DOI 10.1038/NCOMMS10355 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1800 REMARK 3 NUCLEIC ACID ATOMS : 106 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.96000 REMARK 3 B22 (A**2) : 2.68000 REMARK 3 B33 (A**2) : -5.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.715 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1951 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1923 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2630 ; 1.816 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4459 ; 1.454 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 6.984 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;38.715 ;24.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 375 ;14.908 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2062 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 413 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 898 ; 3.441 ; 2.682 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 897 ; 3.443 ; 2.682 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1119 ; 4.622 ; 4.016 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 C 50 157 D 50 157 25560 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 158 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9320 2.4860 -10.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0659 REMARK 3 T33: 0.3290 T12: -0.0300 REMARK 3 T13: 0.0008 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.3237 L22: 2.4184 REMARK 3 L33: 6.8105 L12: -0.7637 REMARK 3 L13: -1.3420 L23: 1.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.1605 S12: -0.1841 S13: -0.2074 REMARK 3 S21: 0.1528 S22: 0.1431 S23: -0.0024 REMARK 3 S31: 0.6375 S32: -0.2489 S33: 0.0174 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 50 D 163 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1760 17.1460 -29.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0625 REMARK 3 T33: 0.3795 T12: -0.0350 REMARK 3 T13: 0.0099 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.0595 L22: 2.4232 REMARK 3 L33: 3.7833 L12: 0.8848 REMARK 3 L13: -1.3302 L23: -1.0985 REMARK 3 S TENSOR REMARK 3 S11: 0.2125 S12: 0.1770 S13: 0.0402 REMARK 3 S21: 0.0473 S22: -0.2096 S23: -0.2172 REMARK 3 S31: -0.1514 S32: 0.1685 S33: -0.0029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ELR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13783 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE, PEG 8000, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.99000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.99000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A B 3 REMARK 465 TYR C 159 REMARK 465 ASN C 160 REMARK 465 ASP C 161 REMARK 465 GLU C 162 REMARK 465 ILE C 163 REMARK 465 ARG C 164 REMARK 465 GLN C 165 REMARK 465 ALA C 166 REMARK 465 GLN C 167 REMARK 465 LEU C 168 REMARK 465 GLN C 169 REMARK 465 GLU C 170 REMARK 465 LEU C 171 REMARK 465 THR C 172 REMARK 465 TYR C 173 REMARK 465 LEU C 174 REMARK 465 ASN C 175 REMARK 465 GLY C 176 REMARK 465 GLY C 177 REMARK 465 SER C 178 REMARK 465 GLU C 179 REMARK 465 ASN C 180 REMARK 465 ALA C 181 REMARK 465 ASP C 182 REMARK 465 VAL C 183 REMARK 465 GLY D 48 REMARK 465 ALA D 49 REMARK 465 ARG D 164 REMARK 465 GLN D 165 REMARK 465 ALA D 166 REMARK 465 GLN D 167 REMARK 465 LEU D 168 REMARK 465 GLN D 169 REMARK 465 GLU D 170 REMARK 465 LEU D 171 REMARK 465 THR D 172 REMARK 465 TYR D 173 REMARK 465 LEU D 174 REMARK 465 ASN D 175 REMARK 465 GLY D 176 REMARK 465 GLY D 177 REMARK 465 SER D 178 REMARK 465 GLU D 179 REMARK 465 ASN D 180 REMARK 465 ALA D 181 REMARK 465 ASP D 182 REMARK 465 VAL D 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 105 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG D 104 17.49 54.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO C 157 ASP C 158 145.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ELR B 3 8 PDB 5ELR 5ELR 3 8 DBREF 5ELR C 50 183 UNP O75525 KHDR3_HUMAN 50 183 DBREF 5ELR D 50 183 UNP O75525 KHDR3_HUMAN 50 183 SEQADV 5ELR GLY C 48 UNP O75525 EXPRESSION TAG SEQADV 5ELR ALA C 49 UNP O75525 EXPRESSION TAG SEQADV 5ELR GLY D 48 UNP O75525 EXPRESSION TAG SEQADV 5ELR ALA D 49 UNP O75525 EXPRESSION TAG SEQRES 1 B 6 A A U A A U SEQRES 1 C 136 GLY ALA ILE ASN LYS ASN MET LYS LEU GLY GLN LYS VAL SEQRES 2 C 136 LEU ILE PRO VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL SEQRES 3 C 136 GLY LYS LEU LEU GLY PRO ARG GLY ASN SER LEU LYS ARG SEQRES 4 C 136 LEU GLN GLU GLU THR LEU THR LYS MET SER ILE LEU GLY SEQRES 5 C 136 LYS GLY SER MET ARG ASP LYS ALA LYS GLU GLU GLU LEU SEQRES 6 C 136 ARG LYS SER GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP SEQRES 7 C 136 ASP LEU HIS VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA SEQRES 8 C 136 GLU ALA TYR ALA ARG MET GLY HIS ALA LEU GLU GLU ILE SEQRES 9 C 136 LYS LYS PHE LEU ILE PRO ASP TYR ASN ASP GLU ILE ARG SEQRES 10 C 136 GLN ALA GLN LEU GLN GLU LEU THR TYR LEU ASN GLY GLY SEQRES 11 C 136 SER GLU ASN ALA ASP VAL SEQRES 1 D 136 GLY ALA ILE ASN LYS ASN MET LYS LEU GLY GLN LYS VAL SEQRES 2 D 136 LEU ILE PRO VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL SEQRES 3 D 136 GLY LYS LEU LEU GLY PRO ARG GLY ASN SER LEU LYS ARG SEQRES 4 D 136 LEU GLN GLU GLU THR LEU THR LYS MET SER ILE LEU GLY SEQRES 5 D 136 LYS GLY SER MET ARG ASP LYS ALA LYS GLU GLU GLU LEU SEQRES 6 D 136 ARG LYS SER GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP SEQRES 7 D 136 ASP LEU HIS VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA SEQRES 8 D 136 GLU ALA TYR ALA ARG MET GLY HIS ALA LEU GLU GLU ILE SEQRES 9 D 136 LYS LYS PHE LEU ILE PRO ASP TYR ASN ASP GLU ILE ARG SEQRES 10 D 136 GLN ALA GLN LEU GLN GLU LEU THR TYR LEU ASN GLY GLY SEQRES 11 D 136 SER GLU ASN ALA ASP VAL FORMUL 4 HOH *21(H2 O) HELIX 1 AA1 ASN C 71 GLY C 78 1 8 HELIX 2 AA2 GLY C 81 LEU C 92 1 12 HELIX 3 AA3 ASP C 105 SER C 115 1 11 HELIX 4 AA4 TYR C 120 ASP C 125 5 6 HELIX 5 AA5 PRO C 136 LYS C 152 1 17 HELIX 6 AA6 LYS C 153 ILE C 156 5 4 HELIX 7 AA7 ASN D 71 GLY D 78 1 8 HELIX 8 AA8 ASN D 82 LEU D 92 1 11 HELIX 9 AA9 ASP D 105 GLY D 116 1 12 HELIX 10 AB1 GLU D 117 ASN D 124 5 8 HELIX 11 AB2 PRO D 136 LYS D 152 1 17 HELIX 12 AB3 LYS D 153 ILE D 156 5 4 SHEET 1 AA1 3 MET C 54 LEU C 61 0 SHEET 2 AA1 3 HIS C 128 ALA C 135 -1 O ILE C 131 N GLN C 58 SHEET 3 AA1 3 LYS C 94 LEU C 98 -1 N LEU C 98 O HIS C 128 SHEET 1 AA2 3 MET D 54 LEU D 61 0 SHEET 2 AA2 3 HIS D 128 ALA D 135 -1 O ILE D 131 N GLN D 58 SHEET 3 AA2 3 LYS D 94 LEU D 98 -1 N LEU D 98 O HIS D 128 CRYST1 42.380 45.560 151.980 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006580 0.00000 MASTER 381 0 0 12 6 0 0 6 0 0 0 23 END