HEADER TRANSCRIPTION 02-NOV-15 5EJV TITLE RORY IN COMPLEX WITH T090131718 AND COACTIVATOR PEPTIDE EBI96 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUES 259-518); COMPND 5 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 6 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED COMPND 7 ORPHAN RECEPTOR-GAMMA; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: EBI96 COACTIVATOR PEPTIDE; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: COACTIVATOR PEPTIDE; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RORC, NR1F3, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: PEPTIDE SYNTHESIS KEYWDS RORGAMMA, T090131718, COACTIVATOR PEPTIDE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.M.MARCOTTE REVDAT 2 29-JUN-16 5EJV 1 JRNL REVDAT 1 27-APR-16 5EJV 0 JRNL AUTH I.J.ENYEDY,N.A.POWELL,J.CARAVELLA,K.VAN VLOTEN,J.CHAO, JRNL AUTH 2 D.BANERJEE,D.MARCOTTE,L.SILVIAN,A.MCKENZIE,V.S.HONG, JRNL AUTH 3 J.D.FONTENOT JRNL TITL DISCOVERY OF BIARYLS AS ROR GAMMA INVERSE AGONISTS BY USING JRNL TITL 2 STRUCTURE-BASED DESIGN. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 2459 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27080181 JRNL DOI 10.1016/J.BMCL.2016.03.109 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.739 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4322 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4131 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5846 ; 2.074 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9457 ; 1.152 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 509 ; 5.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;32.671 ;22.995 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 765 ;18.181 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.843 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4797 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1077 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2048 ; 2.713 ; 3.847 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2047 ; 2.709 ; 3.846 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2553 ; 4.133 ; 5.766 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5978 62.8275 -20.3193 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.0113 REMARK 3 T33: 0.0220 T12: -0.0008 REMARK 3 T13: 0.0034 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.3802 L22: 0.4089 REMARK 3 L33: 0.5377 L12: -0.2439 REMARK 3 L13: 0.1416 L23: 0.1104 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.0185 S13: -0.0271 REMARK 3 S21: -0.0050 S22: 0.0391 S23: 0.0492 REMARK 3 S31: 0.0049 S32: 0.0466 S33: -0.0474 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0182 59.5553 -10.1587 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.0993 REMARK 3 T33: 0.0376 T12: 0.0609 REMARK 3 T13: -0.0176 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.4183 L22: 3.5637 REMARK 3 L33: 6.5141 L12: -2.1252 REMARK 3 L13: 0.7745 L23: 0.3557 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.0155 S13: 0.0810 REMARK 3 S21: 0.0098 S22: 0.0494 S23: -0.1472 REMARK 3 S31: -0.0393 S32: 0.0439 S33: -0.0428 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 264 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9907 91.6913 -27.2662 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: 0.0177 REMARK 3 T33: 0.0250 T12: 0.0069 REMARK 3 T13: 0.0132 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.2267 L22: 1.1297 REMARK 3 L33: 0.8032 L12: -0.3055 REMARK 3 L13: 0.0443 L23: 0.6090 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0104 S13: -0.0230 REMARK 3 S21: 0.0601 S22: 0.0048 S23: 0.0626 REMARK 3 S31: 0.0203 S32: 0.0540 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 13 REMARK 3 ORIGIN FOR THE GROUP (A): 55.7884 85.2317 -18.2785 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.0698 REMARK 3 T33: 0.2345 T12: 0.0255 REMARK 3 T13: -0.0818 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.6554 L22: 10.3806 REMARK 3 L33: 0.1065 L12: -2.5820 REMARK 3 L13: 0.1935 L23: -0.7768 REMARK 3 S TENSOR REMARK 3 S11: -0.1070 S12: -0.0678 S13: 0.0030 REMARK 3 S21: 0.1545 S22: 0.2461 S23: 0.0144 REMARK 3 S31: 0.0171 S32: 0.0061 S33: -0.1391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5EJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19787 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 63.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : 0.91200 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3L0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M NA ACETATE/0.2M NASCN/0.1M TRIS REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.22050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.11025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.33075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 257 REMARK 465 PRO A 258 REMARK 465 THR A 259 REMARK 465 PRO A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 465 THR A 508 REMARK 465 GLU A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 SER A 512 REMARK 465 PRO A 513 REMARK 465 VAL A 514 REMARK 465 GLY A 515 REMARK 465 LEU A 516 REMARK 465 SER A 517 REMARK 465 LYS A 518 REMARK 465 VAL C -2 REMARK 465 GLU C -1 REMARK 465 SER C 0 REMARK 465 VAL C 12 REMARK 465 SER C 13 REMARK 465 PRO C 14 REMARK 465 GLN C 15 REMARK 465 PRO C 16 REMARK 465 GLY B 257 REMARK 465 PRO B 258 REMARK 465 THR B 259 REMARK 465 PRO B 260 REMARK 465 GLU B 261 REMARK 465 ALA B 262 REMARK 465 PRO B 263 REMARK 465 GLU B 509 REMARK 465 THR B 510 REMARK 465 GLU B 511 REMARK 465 SER B 512 REMARK 465 PRO B 513 REMARK 465 VAL B 514 REMARK 465 GLY B 515 REMARK 465 LEU B 516 REMARK 465 SER B 517 REMARK 465 LYS B 518 REMARK 465 VAL D -2 REMARK 465 GLU D -1 REMARK 465 SER D 0 REMARK 465 GLU D 1 REMARK 465 PRO D 14 REMARK 465 GLN D 15 REMARK 465 PRO D 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 GLU C 11 CG CD OE1 OE2 REMARK 470 TYR B 264 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 346 CG CD OE1 NE2 REMARK 470 LYS B 469 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 333 CD GLU A 333 OE2 0.066 REMARK 500 GLN A 460 CG GLN A 460 CD 0.143 REMARK 500 SER B 398 CB SER B 398 OG -0.097 REMARK 500 ASP B 402 CB ASP B 402 CG 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 358 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 HIS A 479 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 TRP B 314 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG B 364 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 364 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 367 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 367 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 SER B 398 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 286 -60.85 75.65 REMARK 500 PHE C 2 56.47 -146.18 REMARK 500 GLN B 286 -61.32 80.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 444 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 444 B 601 DBREF 5EJV A 259 518 UNP P51449 RORG_HUMAN 259 518 DBREF 5EJV C -2 16 PDB 5EJV 5EJV -2 16 DBREF 5EJV B 259 518 UNP P51449 RORG_HUMAN 259 518 DBREF 5EJV D -2 16 PDB 5EJV 5EJV -2 16 SEQADV 5EJV GLY A 257 UNP P51449 EXPRESSION TAG SEQADV 5EJV PRO A 258 UNP P51449 EXPRESSION TAG SEQADV 5EJV GLY B 257 UNP P51449 EXPRESSION TAG SEQADV 5EJV PRO B 258 UNP P51449 EXPRESSION TAG SEQRES 1 A 262 GLY PRO THR PRO GLU ALA PRO TYR ALA SER LEU THR GLU SEQRES 2 A 262 ILE GLU HIS LEU VAL GLN SER VAL CYS LYS SER TYR ARG SEQRES 3 A 262 GLU THR CYS GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN SEQRES 4 A 262 ARG SER ASN ILE PHE SER ARG GLU GLU VAL THR GLY TYR SEQRES 5 A 262 GLN ARG LYS SER MET TRP GLU MET TRP GLU ARG CYS ALA SEQRES 6 A 262 HIS HIS LEU THR GLU ALA ILE GLN TYR VAL VAL GLU PHE SEQRES 7 A 262 ALA LYS ARG LEU SER GLY PHE MET GLU LEU CYS GLN ASN SEQRES 8 A 262 ASP GLN ILE VAL LEU LEU LYS ALA GLY ALA MET GLU VAL SEQRES 9 A 262 VAL LEU VAL ARG MET CYS ARG ALA TYR ASN ALA ASP ASN SEQRES 10 A 262 ARG THR VAL PHE PHE GLU GLY LYS TYR GLY GLY MET GLU SEQRES 11 A 262 LEU PHE ARG ALA LEU GLY CYS SER GLU LEU ILE SER SER SEQRES 12 A 262 ILE PHE ASP PHE SER HIS SER LEU SER ALA LEU HIS PHE SEQRES 13 A 262 SER GLU ASP GLU ILE ALA LEU TYR THR ALA LEU VAL LEU SEQRES 14 A 262 ILE ASN ALA HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS SEQRES 15 A 262 VAL GLU GLN LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS SEQRES 16 A 262 HIS HIS LEU CYS LYS THR HIS ARG GLN SER ILE LEU ALA SEQRES 17 A 262 LYS LEU PRO PRO LYS GLY LYS LEU ARG SER LEU CYS SER SEQRES 18 A 262 GLN HIS VAL GLU ARG LEU GLN ILE PHE GLN HIS LEU HIS SEQRES 19 A 262 PRO ILE VAL VAL GLN ALA ALA PHE PRO PRO LEU TYR LYS SEQRES 20 A 262 GLU LEU PHE SER THR GLU THR GLU SER PRO VAL GLY LEU SEQRES 21 A 262 SER LYS SEQRES 1 C 19 VAL GLU SER GLU PHE PRO TYR LEU LEU SER LEU LEU GLY SEQRES 2 C 19 GLU VAL SER PRO GLN PRO SEQRES 1 B 262 GLY PRO THR PRO GLU ALA PRO TYR ALA SER LEU THR GLU SEQRES 2 B 262 ILE GLU HIS LEU VAL GLN SER VAL CYS LYS SER TYR ARG SEQRES 3 B 262 GLU THR CYS GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN SEQRES 4 B 262 ARG SER ASN ILE PHE SER ARG GLU GLU VAL THR GLY TYR SEQRES 5 B 262 GLN ARG LYS SER MET TRP GLU MET TRP GLU ARG CYS ALA SEQRES 6 B 262 HIS HIS LEU THR GLU ALA ILE GLN TYR VAL VAL GLU PHE SEQRES 7 B 262 ALA LYS ARG LEU SER GLY PHE MET GLU LEU CYS GLN ASN SEQRES 8 B 262 ASP GLN ILE VAL LEU LEU LYS ALA GLY ALA MET GLU VAL SEQRES 9 B 262 VAL LEU VAL ARG MET CYS ARG ALA TYR ASN ALA ASP ASN SEQRES 10 B 262 ARG THR VAL PHE PHE GLU GLY LYS TYR GLY GLY MET GLU SEQRES 11 B 262 LEU PHE ARG ALA LEU GLY CYS SER GLU LEU ILE SER SER SEQRES 12 B 262 ILE PHE ASP PHE SER HIS SER LEU SER ALA LEU HIS PHE SEQRES 13 B 262 SER GLU ASP GLU ILE ALA LEU TYR THR ALA LEU VAL LEU SEQRES 14 B 262 ILE ASN ALA HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS SEQRES 15 B 262 VAL GLU GLN LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS SEQRES 16 B 262 HIS HIS LEU CYS LYS THR HIS ARG GLN SER ILE LEU ALA SEQRES 17 B 262 LYS LEU PRO PRO LYS GLY LYS LEU ARG SER LEU CYS SER SEQRES 18 B 262 GLN HIS VAL GLU ARG LEU GLN ILE PHE GLN HIS LEU HIS SEQRES 19 B 262 PRO ILE VAL VAL GLN ALA ALA PHE PRO PRO LEU TYR LYS SEQRES 20 B 262 GLU LEU PHE SER THR GLU THR GLU SER PRO VAL GLY LEU SEQRES 21 B 262 SER LYS SEQRES 1 D 19 VAL GLU SER GLU PHE PRO TYR LEU LEU SER LEU LEU GLY SEQRES 2 D 19 GLU VAL SER PRO GLN PRO HET 444 A 601 31 HET 444 B 601 31 HETNAM 444 N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1- HETNAM 2 444 HYDROXY-1-(TRIFLUOROMETHYL) HETNAM 3 444 ETHYL]PHENYL}BENZENESULFONAMIDE FORMUL 5 444 2(C17 H12 F9 N O3 S) FORMUL 7 HOH *32(H2 O) HELIX 1 AA1 SER A 266 GLU A 283 1 18 HELIX 2 AA2 ARG A 288 GLN A 295 1 8 HELIX 3 AA3 SER A 301 LYS A 311 1 11 HELIX 4 AA4 SER A 312 LEU A 338 1 27 HELIX 5 AA5 GLY A 340 LEU A 344 5 5 HELIX 6 AA6 CYS A 345 MET A 365 1 21 HELIX 7 AA7 GLY A 384 GLY A 392 5 9 HELIX 8 AA8 CYS A 393 ALA A 409 1 17 HELIX 9 AA9 SER A 413 ILE A 426 1 14 HELIX 10 AB1 GLU A 435 THR A 457 1 23 HELIX 11 AB2 ARG A 459 LEU A 466 5 8 HELIX 12 AB3 GLY A 470 HIS A 490 1 21 HELIX 13 AB4 HIS A 490 PHE A 498 1 9 HELIX 14 AB5 PRO A 499 SER A 507 1 9 HELIX 15 AB6 PHE C 2 GLU C 11 1 10 HELIX 16 AB7 SER B 266 GLU B 283 1 18 HELIX 17 AB8 ARG B 288 GLN B 295 1 8 HELIX 18 AB9 SER B 301 ARG B 310 1 10 HELIX 19 AC1 SER B 312 LEU B 338 1 27 HELIX 20 AC2 CYS B 345 MET B 365 1 21 HELIX 21 AC3 GLY B 384 GLY B 392 5 9 HELIX 22 AC4 CYS B 393 ALA B 409 1 17 HELIX 23 AC5 SER B 413 ILE B 426 1 14 HELIX 24 AC6 GLU B 435 THR B 457 1 23 HELIX 25 AC7 ARG B 459 LEU B 466 5 8 HELIX 26 AC8 PRO B 468 HIS B 490 1 23 HELIX 27 AC9 HIS B 490 PHE B 498 1 9 HELIX 28 AD1 PRO B 499 SER B 507 1 9 HELIX 29 AD2 PRO D 3 GLY D 10 1 8 SHEET 1 AA1 3 TYR A 369 ASN A 370 0 SHEET 2 AA1 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370 SHEET 3 AA1 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378 SHEET 1 AA2 3 TYR B 369 ASN B 370 0 SHEET 2 AA2 3 THR B 375 PHE B 378 -1 O THR B 375 N ASN B 370 SHEET 3 AA2 3 LYS B 381 GLY B 383 -1 O LYS B 381 N PHE B 378 SITE 1 AC1 11 TRP A 317 CYS A 320 ALA A 321 LEU A 324 SITE 2 AC1 11 MET A 365 PHE A 378 PHE A 388 LEU A 396 SITE 3 AC1 11 ILE A 397 ILE A 400 HIS A 479 SITE 1 AC2 8 TRP B 317 CYS B 320 MET B 358 MET B 365 SITE 2 AC2 8 LEU B 396 ILE B 397 ILE B 400 HIS B 479 CRYST1 63.139 63.139 160.441 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006233 0.00000 MASTER 469 0 2 29 6 0 5 6 0 0 0 46 END