HEADER CELL ADHESION 10-OCT-15 5E6V TITLE RE-REFINEMENT OF THE CRYSTAL STRUCTURE OF THE PLEXIN-SEMAPHORIN- TITLE 2 INTEGRIN DOMAIN/HYBRID DOMAIN/I-EGF1 SEGMENT FROM THE HUMAN INTEGRIN TITLE 3 B2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-125, 365-482; COMPND 5 SYNONYM: CELL SURFACE ADHESION GLYCOPROTEINS LFA-1/CR3/P150,95 COMPND 6 SUBUNIT BETA,COMPLEMENT RECEPTOR C3 SUBUNIT BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB2, CD18, MFI7; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022 KEYWDS LYMPHOCYTE FUNCTION-ASSOCIATED ANTIGEN-1, LFA-1, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.SEN,T.A.SPRINGER REVDAT 7 29-JUL-20 5E6V 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 04-DEC-19 5E6V 1 SEQRES REVDAT 5 27-SEP-17 5E6V 1 REMARK REVDAT 4 15-MAR-17 5E6V 1 JRNL REMARK REVDAT 3 11-MAY-16 5E6V 1 JRNL REVDAT 2 16-MAR-16 5E6V 1 JRNL REVDAT 1 02-MAR-16 5E6V 0 JRNL AUTH M.SEN,T.A.SPRINGER JRNL TITL LEUKOCYTE INTEGRIN ALPHA L BETA 2 HEADPIECE STRUCTURES: THE JRNL TITL 2 ALPHA I DOMAIN, THE POCKET FOR THE INTERNAL LIGAND, AND JRNL TITL 3 CONCERTED MOVEMENTS OF ITS LOOPS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 2940 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26936951 JRNL DOI 10.1073/PNAS.1601379113 REMARK 0 REMARK 0 THIS ENTRY 5E6V REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 STRUCTURAL DATA IN R1YUKSF ORIGINAL DATA DETERMINED BY AUTHORS: REMARK 0 SHI, M., SUNDRAMURTHY, K., LIU, B., TAN, S.M., LAW, S.K., LESCAR, REMARK 0 J. REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 1YUK REMARK 0 AUTH M.SHI,K.SUNDRAMURTHY,B.LIU,S.M.TAN,S.K.LAW,J.LESCAR REMARK 0 TITL THE CRYSTAL STRUCTURE OF THE PLEXIN-SEMAPHORIN-INTEGRIN REMARK 0 TITL 2 DOMAIN/HYBRID DOMAIN/I-EGF1 SEGMENT FROM THE HUMAN INTEGRIN REMARK 0 TITL 3 BETA2 SUBUNIT AT 1.8-A RESOLUTION. REMARK 0 REF J. BIOL. CHEM. V. 280 30586 2005 REMARK 0 REFN ISSN 0021-9258 REMARK 0 PMID 15965234 REMARK 0 DOI 10.1074/JBC.M502525200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 24802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4820 - 3.7413 0.99 2830 165 0.1693 0.2233 REMARK 3 2 3.7413 - 2.9707 1.00 2780 151 0.1618 0.2261 REMARK 3 3 2.9707 - 2.5956 1.00 2727 165 0.1776 0.2187 REMARK 3 4 2.5956 - 2.3584 1.00 2760 133 0.1857 0.2336 REMARK 3 5 2.3584 - 2.1894 1.00 2750 146 0.1718 0.2137 REMARK 3 6 2.1894 - 2.0604 1.00 2713 164 0.1852 0.2418 REMARK 3 7 2.0604 - 1.9572 1.00 2717 144 0.1933 0.2526 REMARK 3 8 1.9572 - 1.8720 1.00 2727 130 0.2127 0.2725 REMARK 3 9 1.8720 - 1.8000 0.96 2634 124 0.2513 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1840 REMARK 3 ANGLE : 1.213 2506 REMARK 3 CHIRALITY : 0.049 288 REMARK 3 PLANARITY : 0.005 327 REMARK 3 DIHEDRAL : 12.294 701 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5345 6.9731 -1.3187 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1633 REMARK 3 T33: 0.2573 T12: 0.0133 REMARK 3 T13: -0.0235 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.9497 L22: 1.1120 REMARK 3 L33: 1.2769 L12: -0.3717 REMARK 3 L13: -0.1630 L23: -0.0671 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.0542 S13: -0.2031 REMARK 3 S21: -0.0810 S22: 0.1570 S23: -0.1182 REMARK 3 S31: 0.2661 S32: 0.2669 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1616 16.4135 16.1344 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.1865 REMARK 3 T33: 0.3706 T12: 0.0914 REMARK 3 T13: 0.0853 T23: -0.0950 REMARK 3 L TENSOR REMARK 3 L11: 1.5702 L22: 0.2368 REMARK 3 L33: 1.3872 L12: -0.1857 REMARK 3 L13: -0.2923 L23: -0.1062 REMARK 3 S TENSOR REMARK 3 S11: 0.7273 S12: 0.0316 S13: 1.2161 REMARK 3 S21: 0.1461 S22: -0.2289 S23: -0.0665 REMARK 3 S31: -1.0050 S32: -0.4175 S33: -0.0035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6550 9.7724 20.3146 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.2459 REMARK 3 T33: 0.1921 T12: 0.0168 REMARK 3 T13: -0.0126 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.5807 L22: 1.2380 REMARK 3 L33: 0.3292 L12: -0.0799 REMARK 3 L13: 0.4773 L23: -0.1599 REMARK 3 S TENSOR REMARK 3 S11: -0.1321 S12: -0.2667 S13: 0.2815 REMARK 3 S21: 0.4025 S22: -0.0079 S23: -0.1082 REMARK 3 S31: 0.0444 S32: -0.1693 S33: -0.0118 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6810 2.5109 25.3735 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.3510 REMARK 3 T33: 0.1199 T12: 0.0373 REMARK 3 T13: -0.0752 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 0.9691 L22: 0.6985 REMARK 3 L33: 0.5914 L12: -0.2237 REMARK 3 L13: -0.3261 L23: 0.0950 REMARK 3 S TENSOR REMARK 3 S11: -0.1605 S12: -0.4699 S13: -0.2924 REMARK 3 S21: 0.2230 S22: 0.0799 S23: -0.2766 REMARK 3 S31: 0.2702 S32: 0.0972 S33: -0.2793 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 396 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8717 11.3470 4.9565 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1688 REMARK 3 T33: 0.2256 T12: 0.0174 REMARK 3 T13: 0.0346 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.1938 L22: 0.0236 REMARK 3 L33: 0.8357 L12: 0.5057 REMARK 3 L13: -0.3019 L23: -0.1796 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.1715 S13: 0.1688 REMARK 3 S21: 0.0263 S22: 0.1290 S23: -0.0567 REMARK 3 S31: -0.0427 S32: -0.2190 S33: 0.0011 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0662 14.2841 -19.5924 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.3458 REMARK 3 T33: 0.2474 T12: 0.0148 REMARK 3 T13: 0.0628 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 0.3203 L22: 0.6579 REMARK 3 L33: 0.9789 L12: -0.0718 REMARK 3 L13: 0.2348 L23: 0.1425 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.2844 S13: -0.3788 REMARK 3 S21: -0.1931 S22: -0.0162 S23: -0.3145 REMARK 3 S31: 0.3710 S32: 0.4245 S33: 0.0780 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1YUK REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.90900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 TYR A 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 659 O HOH A 817 2.03 REMARK 500 O HOH A 608 O HOH A 689 2.17 REMARK 500 O HOH A 705 O HOH A 822 2.17 REMARK 500 O HOH A 640 O HOH A 817 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 654 O HOH A 808 2655 2.15 REMARK 500 O HOH A 674 O HOH A 785 2645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 73.85 -156.38 REMARK 500 ASP A 68 -179.73 -67.03 REMARK 500 LYS A 74 -94.88 -102.03 REMARK 500 SER A 343 -65.80 -92.67 REMARK 500 GLN A 382 -175.03 -67.47 REMARK 500 HIS A 438 18.55 59.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 830 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 831 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 832 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 833 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 834 DISTANCE = 8.12 ANGSTROMS REMARK 525 HOH A 835 DISTANCE = 9.14 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YUK RELATED DB: PDB REMARK 900 THIS ENTRY 5E6V REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA REMARK 900 R1YUKSF DBREF 5E6V A 1 103 UNP P05107 ITB2_HUMAN 23 125 DBREF 5E6V A 343 460 UNP P05107 ITB2_HUMAN 365 482 SEQADV 5E6V HIS A 461 UNP P05107 EXPRESSION TAG SEQADV 5E6V HIS A 462 UNP P05107 EXPRESSION TAG SEQADV 5E6V HIS A 463 UNP P05107 EXPRESSION TAG SEQRES 1 A 224 PCA GLU CYS THR LYS PHE LYS VAL SER SER CYS ARG GLU SEQRES 2 A 224 CYS ILE GLU SER GLY PRO GLY CYS THR TRP CYS GLN LYS SEQRES 3 A 224 LEU ASN PHE THR GLY PRO GLY ASP PRO ASP SER ILE ARG SEQRES 4 A 224 CYS ASP THR ARG PRO GLN LEU LEU MET ARG GLY CYS ALA SEQRES 5 A 224 ALA ASP ASP ILE MET ASP PRO THR SER LEU ALA GLU THR SEQRES 6 A 224 GLN GLU ASP HIS ASN GLY GLY GLN LYS GLN LEU SER PRO SEQRES 7 A 224 GLN LYS VAL THR LEU TYR LEU ARG PRO GLY GLN ALA ALA SEQRES 8 A 224 ALA PHE ASN VAL THR PHE ARG ARG ALA LYS GLY TYR SER SEQRES 9 A 224 ARG VAL PHE LEU ASP HIS ASN ALA LEU PRO ASP THR LEU SEQRES 10 A 224 LYS VAL THR TYR ASP SER PHE CYS SER ASN GLY VAL THR SEQRES 11 A 224 HIS ARG ASN GLN PRO ARG GLY ASP CYS ASP GLY VAL GLN SEQRES 12 A 224 ILE ASN VAL PRO ILE THR PHE GLN VAL LYS VAL THR ALA SEQRES 13 A 224 THR GLU CYS ILE GLN GLU GLN SER PHE VAL ILE ARG ALA SEQRES 14 A 224 LEU GLY PHE THR ASP ILE VAL THR VAL GLN VAL LEU PRO SEQRES 15 A 224 GLN CYS GLU CYS ARG CYS ARG ASP GLN SER ARG ASP ARG SEQRES 16 A 224 SER LEU CYS HIS GLY LYS GLY PHE LEU GLU CYS GLY ILE SEQRES 17 A 224 CYS ARG CYS ASP THR GLY TYR ILE GLY LYS ASN CYS GLU SEQRES 18 A 224 HIS HIS HIS MODRES 5E6V PCA A 1 GLN MODIFIED RESIDUE HET PCA A 1 8 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET FUL C 3 10 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 FUL C6 H12 O5 FORMUL 4 HOH *235(H2 O) HELIX 1 AA1 SER A 10 GLU A 16 1 7 HELIX 2 AA2 PRO A 35 ILE A 38 5 4 HELIX 3 AA3 THR A 42 ARG A 49 1 8 HELIX 4 AA4 ALA A 52 ASP A 54 5 3 HELIX 5 AA5 SER A 435 GLY A 439 5 5 SHEET 1 AA1 3 CYS A 40 ASP A 41 0 SHEET 2 AA1 3 THR A 22 CYS A 24 -1 N THR A 22 O ASP A 41 SHEET 3 AA1 3 ILE A 56 MET A 57 -1 O MET A 57 N TRP A 23 SHEET 1 AA2 6 LEU A 62 GLN A 66 0 SHEET 2 AA2 6 LYS A 80 LEU A 85 -1 O THR A 82 N GLU A 64 SHEET 3 AA2 6 VAL A 415 PRO A 421 1 O GLN A 418 N LEU A 83 SHEET 4 AA2 6 GLN A 402 ALA A 408 -1 N GLN A 402 O VAL A 419 SHEET 5 AA2 6 TYR A 103 HIS A 349 -1 N ASP A 348 O ARG A 407 SHEET 6 AA2 6 GLY A 376 VAL A 381 -1 O GLY A 380 N SER A 343 SHEET 1 AA3 5 LEU A 76 SER A 77 0 SHEET 2 AA3 5 ALA A 91 PHE A 97 -1 O THR A 96 N SER A 77 SHEET 3 AA3 5 ILE A 387 ALA A 395 -1 O VAL A 391 N PHE A 93 SHEET 4 AA3 5 LEU A 356 PHE A 363 -1 N PHE A 363 O THR A 388 SHEET 5 AA3 5 THR A 369 GLN A 373 -1 O GLN A 373 N TYR A 360 SHEET 1 AA4 2 GLY A 441 GLU A 444 0 SHEET 2 AA4 2 ILE A 447 CYS A 450 -1 O ARG A 449 N PHE A 442 SHEET 1 AA5 2 TYR A 454 ILE A 455 0 SHEET 2 AA5 2 HIS A 461 HIS A 462 -1 O HIS A 461 N ILE A 455 SSBOND 1 CYS A 3 CYS A 21 1555 1555 2.08 SSBOND 2 CYS A 11 CYS A 425 1555 1555 2.01 SSBOND 3 CYS A 14 CYS A 40 1555 1555 2.08 SSBOND 4 CYS A 24 CYS A 51 1555 1555 2.09 SSBOND 5 CYS A 364 CYS A 378 1555 1555 2.04 SSBOND 6 CYS A 398 CYS A 423 1555 1555 2.05 SSBOND 7 CYS A 427 CYS A 445 1555 1555 2.05 SSBOND 8 CYS A 437 CYS A 448 1555 1555 2.06 SSBOND 9 CYS A 450 CYS A 459 1555 1555 2.05 LINK C PCA A 1 N GLU A 2 1555 1555 1.33 LINK ND2 ASN A 28 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 94 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUL C 3 1555 1555 1.44 CISPEP 1 SER A 77 PRO A 78 0 0.32 CRYST1 58.600 31.818 74.950 90.00 91.20 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017065 0.000000 0.000357 0.00000 SCALE2 0.000000 0.031429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013345 0.00000 MASTER 381 0 6 5 18 0 0 6 0 0 0 18 END