HEADER HYDROLASE 09-OCT-15 5E6J TITLE STRUCTURE OF SARS PLPRO BOUND TO A LYS48-LINKED DI-UBIQUITIN ACTIVITY TITLE 2 BASED PROBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1AB; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 1541-1856; COMPND 5 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 6 EC: 3.4.19.12,3.4.22.69,3.4.22.-,2.7.7.48,3.6.4.12,3.6.4.13,2.1.1.-, COMPND 7 3.1.13.-,3.1.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUITIN; COMPND 11 CHAIN: B, E; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: POLYUBIQUITIN-B; COMPND 16 CHAIN: C, F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SARS CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: SARS-COV; SOURCE 4 ORGANISM_TAXID: 227859; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS SARS PLPRO, DEUBIQUITINATING ENZYME, UBIQUITIN, ACTIVITY BASED PROBE, KEYWDS 2 K48-LINKAGE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.LIMA,M.BEKES REVDAT 6 20-NOV-19 5E6J 1 REMARK REVDAT 5 20-DEC-17 5E6J 1 JRNL REVDAT 4 01-NOV-17 5E6J 1 REMARK REVDAT 3 06-SEP-17 5E6J 1 REMARK REVDAT 2 25-JAN-17 5E6J 1 LINK REVDAT 1 18-MAY-16 5E6J 0 JRNL AUTH M.BEKES,G.J.VAN DER HEDEN VAN NOORT,R.EKKEBUS,H.OVAA, JRNL AUTH 2 T.T.HUANG,C.D.LIMA JRNL TITL RECOGNITION OF LYS48-LINKED DI-UBIQUITIN AND JRNL TITL 2 DEUBIQUITINATING ACTIVITIES OF THE SARS CORONAVIRUS JRNL TITL 3 PAPAIN-LIKE PROTEASE. JRNL REF MOL. CELL V. 62 572 2016 JRNL REFN ISSN 1097-4164 JRNL PMID 27203180 JRNL DOI 10.1016/J.MOLCEL.2016.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 50864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2235 - 7.5961 0.98 2531 148 0.1826 0.2277 REMARK 3 2 7.5961 - 6.0327 0.97 2562 129 0.2261 0.2418 REMARK 3 3 6.0327 - 5.2712 0.99 2544 136 0.2095 0.2492 REMARK 3 4 5.2712 - 4.7897 1.00 2627 136 0.1901 0.2032 REMARK 3 5 4.7897 - 4.4466 1.00 2592 163 0.1953 0.2171 REMARK 3 6 4.4466 - 4.1846 0.99 2569 148 0.1936 0.2121 REMARK 3 7 4.1846 - 3.9751 0.96 2491 147 0.2100 0.2306 REMARK 3 8 3.9751 - 3.8021 0.94 2448 130 0.2175 0.3125 REMARK 3 9 3.8021 - 3.6558 0.97 2542 125 0.2325 0.2299 REMARK 3 10 3.6558 - 3.5297 0.98 2566 158 0.2635 0.3094 REMARK 3 11 3.5297 - 3.4194 0.97 2526 113 0.2685 0.3491 REMARK 3 12 3.4194 - 3.3216 0.98 2572 126 0.2760 0.3176 REMARK 3 13 3.3216 - 3.2342 0.97 2515 127 0.2855 0.3498 REMARK 3 14 3.2342 - 3.1553 0.96 2510 135 0.3087 0.3387 REMARK 3 15 3.1553 - 3.0836 0.96 2549 129 0.3088 0.4227 REMARK 3 16 3.0836 - 3.0180 0.98 2513 140 0.3412 0.3418 REMARK 3 17 3.0180 - 2.9576 0.97 2558 137 0.3620 0.3423 REMARK 3 18 2.9576 - 2.9018 0.97 2547 126 0.3677 0.3937 REMARK 3 19 2.9018 - 2.8500 0.98 2512 137 0.3625 0.4020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7453 REMARK 3 ANGLE : 0.601 10091 REMARK 3 CHIRALITY : 0.025 1167 REMARK 3 PLANARITY : 0.002 1292 REMARK 3 DIHEDRAL : 11.869 2728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4MM3, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.1 M LITHIUM ACETATE, 17% REMARK 280 PEG 6000, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.11950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER CONFIRMED BY CROSS-LINKING AND GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 VAL D 3 REMARK 465 PRO D 317 REMARK 465 LEU D 318 REMARK 465 GLU D 319 REMARK 465 HIS D 320 REMARK 465 HIS D 321 REMARK 465 HIS D 322 REMARK 465 HIS D 323 REMARK 465 HIS D 324 REMARK 465 HIS D 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 LYS D 46 CG CD CE NZ REMARK 470 CYS D 190 SG REMARK 470 LYS D 253 CG CD CE NZ REMARK 470 LYS D 298 CG CD CE NZ REMARK 470 MET F 1 CG SD CE REMARK 470 ARG F 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 74 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N5 5MW E 48 O GLY F 75 2.16 REMARK 500 OE2 GLU D 180 OG1 THR F 9 2.19 REMARK 500 N5 5MW B 48 O GLY C 75 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 -59.81 -124.07 REMARK 500 PHE A 96 74.48 -117.67 REMARK 500 SER A 104 -162.81 -113.04 REMARK 500 CYS A 190 -160.30 -112.00 REMARK 500 GLN A 256 -73.38 -55.55 REMARK 500 LEU A 260 -62.32 -97.00 REMARK 500 LYS A 280 -89.79 -136.48 REMARK 500 THR A 282 -164.93 -104.24 REMARK 500 THR A 309 -65.31 -133.72 REMARK 500 GLU A 319 97.83 -57.94 REMARK 500 LYS B 11 103.49 -58.55 REMARK 500 GLU B 64 44.09 38.45 REMARK 500 ARG B 74 75.71 -116.61 REMARK 500 ASP D 77 99.68 -64.41 REMARK 500 SER D 104 -167.00 -103.67 REMARK 500 ASP D 144 -74.93 -82.05 REMARK 500 ALA D 145 -3.25 61.17 REMARK 500 SER D 181 34.55 -84.55 REMARK 500 CYS D 193 -81.24 -63.15 REMARK 500 THR D 258 -0.36 -142.07 REMARK 500 CYS D 271 135.51 -172.23 REMARK 500 LYS D 280 -122.30 -113.11 REMARK 500 THR D 282 -148.06 -135.10 REMARK 500 SER D 295 -67.70 -99.32 REMARK 500 THR D 309 -77.74 -116.92 REMARK 500 THR D 314 53.07 -113.15 REMARK 500 LYS E 11 96.81 -61.82 REMARK 500 LYS E 33 -50.57 -125.42 REMARK 500 GLU E 64 55.82 39.12 REMARK 500 ARG E 74 68.85 -107.41 REMARK 500 LYS F 33 -42.47 -144.69 REMARK 500 GLN F 62 -153.80 -136.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 402 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 HIS A 320 NE2 119.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY E 75 and AYE E REMARK 800 76 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide AYE E 76 and CYS D REMARK 800 112 DBREF 5E6J A 2 317 UNP P0C6X7 R1AB_CVHSA 1541 1856 DBREF 5E6J B 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 5E6J C 1 75 UNP P0CG47 UBB_HUMAN 1 75 DBREF 5E6J D 2 317 UNP P0C6X7 R1AB_CVHSA 1541 1856 DBREF 5E6J E 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 5E6J F 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 5E6J MET A 1 UNP P0C6X7 INITIATING METHIONINE SEQADV 5E6J LEU A 318 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J GLU A 319 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 320 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 321 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 322 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 323 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 324 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS A 325 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J AYE B 76 UNP P0CG48 ENGINEERED MUTATION SEQADV 5E6J MET D 1 UNP P0C6X7 INITIATING METHIONINE SEQADV 5E6J LEU D 318 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J GLU D 319 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 320 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 321 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 322 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 323 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 324 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J HIS D 325 UNP P0C6X7 EXPRESSION TAG SEQADV 5E6J AYE E 76 UNP P0CG48 ENGINEERED MUTATION SEQRES 1 A 325 MET GLU VAL LYS THR ILE LYS VAL PHE THR THR VAL ASP SEQRES 2 A 325 ASN THR ASN LEU HIS THR GLN LEU VAL ASP MET SER MET SEQRES 3 A 325 THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY SEQRES 4 A 325 ALA ASP VAL THR LYS ILE LYS PRO HIS VAL ASN HIS GLU SEQRES 5 A 325 GLY LYS THR PHE PHE VAL LEU PRO SER ASP ASP THR LEU SEQRES 6 A 325 ARG SER GLU ALA PHE GLU TYR TYR HIS THR LEU ASP GLU SEQRES 7 A 325 SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR SEQRES 8 A 325 LYS LYS TRP LYS PHE PRO GLN VAL GLY GLY LEU THR SER SEQRES 9 A 325 ILE LYS TRP ALA ASP ASN ASN CYS TYR LEU SER SER VAL SEQRES 10 A 325 LEU LEU ALA LEU GLN GLN LEU GLU VAL LYS PHE ASN ALA SEQRES 11 A 325 PRO ALA LEU GLN GLU ALA TYR TYR ARG ALA ARG ALA GLY SEQRES 12 A 325 ASP ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR SER SEQRES 13 A 325 ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR SEQRES 14 A 325 MET THR HIS LEU LEU GLN HIS ALA ASN LEU GLU SER ALA SEQRES 15 A 325 LYS ARG VAL LEU ASN VAL VAL CYS LYS HIS CYS GLY GLN SEQRES 16 A 325 LYS THR THR THR LEU THR GLY VAL GLU ALA VAL MET TYR SEQRES 17 A 325 MET GLY THR LEU SER TYR ASP ASN LEU LYS THR GLY VAL SEQRES 18 A 325 SER ILE PRO CYS VAL CYS GLY ARG ASP ALA THR GLN TYR SEQRES 19 A 325 LEU VAL GLN GLN GLU SER SER PHE VAL MET MET SER ALA SEQRES 20 A 325 PRO PRO ALA GLU TYR LYS LEU GLN GLN GLY THR PHE LEU SEQRES 21 A 325 CYS ALA ASN GLU TYR THR GLY ASN TYR GLN CYS GLY HIS SEQRES 22 A 325 TYR THR HIS ILE THR ALA LYS GLU THR LEU TYR ARG ILE SEQRES 23 A 325 ASP GLY ALA HIS LEU THR LYS MET SER GLU TYR LYS GLY SEQRES 24 A 325 PRO VAL THR ASP VAL PHE TYR LYS GLU THR SER TYR THR SEQRES 25 A 325 THR THR ILE LYS PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY 5MW GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY AYE SEQRES 1 C 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 D 325 MET GLU VAL LYS THR ILE LYS VAL PHE THR THR VAL ASP SEQRES 2 D 325 ASN THR ASN LEU HIS THR GLN LEU VAL ASP MET SER MET SEQRES 3 D 325 THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY SEQRES 4 D 325 ALA ASP VAL THR LYS ILE LYS PRO HIS VAL ASN HIS GLU SEQRES 5 D 325 GLY LYS THR PHE PHE VAL LEU PRO SER ASP ASP THR LEU SEQRES 6 D 325 ARG SER GLU ALA PHE GLU TYR TYR HIS THR LEU ASP GLU SEQRES 7 D 325 SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR SEQRES 8 D 325 LYS LYS TRP LYS PHE PRO GLN VAL GLY GLY LEU THR SER SEQRES 9 D 325 ILE LYS TRP ALA ASP ASN ASN CYS TYR LEU SER SER VAL SEQRES 10 D 325 LEU LEU ALA LEU GLN GLN LEU GLU VAL LYS PHE ASN ALA SEQRES 11 D 325 PRO ALA LEU GLN GLU ALA TYR TYR ARG ALA ARG ALA GLY SEQRES 12 D 325 ASP ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR SER SEQRES 13 D 325 ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR SEQRES 14 D 325 MET THR HIS LEU LEU GLN HIS ALA ASN LEU GLU SER ALA SEQRES 15 D 325 LYS ARG VAL LEU ASN VAL VAL CYS LYS HIS CYS GLY GLN SEQRES 16 D 325 LYS THR THR THR LEU THR GLY VAL GLU ALA VAL MET TYR SEQRES 17 D 325 MET GLY THR LEU SER TYR ASP ASN LEU LYS THR GLY VAL SEQRES 18 D 325 SER ILE PRO CYS VAL CYS GLY ARG ASP ALA THR GLN TYR SEQRES 19 D 325 LEU VAL GLN GLN GLU SER SER PHE VAL MET MET SER ALA SEQRES 20 D 325 PRO PRO ALA GLU TYR LYS LEU GLN GLN GLY THR PHE LEU SEQRES 21 D 325 CYS ALA ASN GLU TYR THR GLY ASN TYR GLN CYS GLY HIS SEQRES 22 D 325 TYR THR HIS ILE THR ALA LYS GLU THR LEU TYR ARG ILE SEQRES 23 D 325 ASP GLY ALA HIS LEU THR LYS MET SER GLU TYR LYS GLY SEQRES 24 D 325 PRO VAL THR ASP VAL PHE TYR LYS GLU THR SER TYR THR SEQRES 25 D 325 THR THR ILE LYS PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 76 GLN GLN ARG LEU ILE PHE ALA GLY 5MW GLN LEU GLU ASP SEQRES 5 E 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY AYE SEQRES 1 F 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 F 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY MODRES 5E6J 5MW B 48 LYS MODIFIED RESIDUE MODRES 5E6J 5MW E 48 LYS MODIFIED RESIDUE HET 5MW B 48 14 HET AYE B 76 4 HET 5MW E 48 14 HET AYE E 76 4 HET ACT A 401 4 HET NI A 402 1 HETNAM 5MW (2~{S})-5-[4-(AMINOMETHYL)-1,2,3-TRIAZOL-1-YL]-2- HETNAM 2 5MW AZANYL-PENTANOIC ACID HETNAM AYE PROP-2-EN-1-AMINE HETNAM ACT ACETATE ION HETNAM NI NICKEL (II) ION HETSYN AYE ALLYLAMINE FORMUL 2 5MW 2(C8 H15 N5 O2) FORMUL 2 AYE 2(C3 H7 N) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 NI NI 2+ FORMUL 9 HOH *55(H2 O) HELIX 1 AA1 THR A 27 GLN A 31 5 5 HELIX 2 AA2 HIS A 48 GLU A 52 5 5 HELIX 3 AA3 ASP A 62 HIS A 74 1 13 HELIX 4 AA4 SER A 79 LYS A 92 1 14 HELIX 5 AA5 ASN A 111 GLN A 123 1 13 HELIX 6 AA6 ALA A 130 GLY A 143 1 14 HELIX 7 AA7 ALA A 145 SER A 156 1 12 HELIX 8 AA8 ASP A 165 GLN A 175 1 11 HELIX 9 AA9 VAL A 203 ALA A 205 5 3 HELIX 10 AB1 TYR A 214 GLY A 220 1 7 HELIX 11 AB2 GLN A 255 PHE A 259 5 5 HELIX 12 AB3 THR B 22 ILE B 30 1 9 HELIX 13 AB4 ILE B 30 GLY B 35 1 6 HELIX 14 AB5 PRO B 37 ASP B 39 5 3 HELIX 15 AB6 THR C 22 GLY C 35 1 14 HELIX 16 AB7 THR D 27 GLY D 33 1 7 HELIX 17 AB8 HIS D 48 GLU D 52 5 5 HELIX 18 AB9 ASP D 62 HIS D 74 1 13 HELIX 19 AC1 SER D 79 LYS D 92 1 14 HELIX 20 AC2 ASN D 111 GLN D 122 1 12 HELIX 21 AC3 ALA D 130 GLY D 143 1 14 HELIX 22 AC4 ALA D 145 SER D 156 1 12 HELIX 23 AC5 ASP D 165 GLN D 175 1 11 HELIX 24 AC6 VAL D 203 ALA D 205 5 3 HELIX 25 AC7 SER D 213 GLY D 220 1 8 HELIX 26 AC8 THR E 22 ILE E 30 1 9 HELIX 27 AC9 ILE E 30 GLY E 35 1 6 HELIX 28 AD1 THR F 22 GLY F 35 1 14 HELIX 29 AD2 PRO F 37 ASP F 39 5 3 SHEET 1 AA110 ALA A 40 ASP A 41 0 SHEET 2 AA110 THR A 35 LEU A 37 -1 N LEU A 37 O ALA A 40 SHEET 3 AA110 THR A 55 VAL A 58 -1 O PHE A 57 N TYR A 36 SHEET 4 AA110 THR A 5 THR A 11 1 N THR A 11 O PHE A 56 SHEET 5 AA110 LEU A 17 ASP A 23 -1 O GLN A 20 N VAL A 8 SHEET 6 AA110 LYS F 11 GLU F 16 1 O THR F 12 N LEU A 17 SHEET 7 AA110 GLN F 2 THR F 7 -1 N ILE F 3 O LEU F 15 SHEET 8 AA110 THR F 66 LEU F 71 1 O LEU F 67 N PHE F 4 SHEET 9 AA110 GLN F 41 PHE F 45 -1 N ILE F 44 O HIS F 68 SHEET 10 AA110 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 SHEET 1 AA2 4 GLN A 195 THR A 201 0 SHEET 2 AA2 4 LYS A 183 VAL A 189 -1 N ARG A 184 O LEU A 200 SHEET 3 AA2 4 ASP A 230 GLU A 239 -1 O GLU A 239 N LYS A 183 SHEET 4 AA2 4 VAL A 221 PRO A 224 -1 N ILE A 223 O ALA A 231 SHEET 1 AA3 7 MET A 207 MET A 209 0 SHEET 2 AA3 7 PHE A 242 LEU A 254 1 O SER A 246 N TYR A 208 SHEET 3 AA3 7 TYR A 297 LYS A 307 -1 O VAL A 304 N MET A 245 SHEET 4 AA3 7 CYS A 261 GLY A 267 -1 N CYS A 261 O PHE A 305 SHEET 5 AA3 7 GLY A 272 ALA A 279 -1 O THR A 275 N GLU A 264 SHEET 6 AA3 7 LEU A 283 ASP A 287 -1 O TYR A 284 N THR A 278 SHEET 7 AA3 7 HIS A 290 MET A 294 -1 O HIS A 290 N ASP A 287 SHEET 1 AA4 5 THR B 12 GLU B 16 0 SHEET 2 AA4 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA4 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA4 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA4 5 5MW B 48 GLN B 49 -1 O 5MW B 48 N PHE B 45 SHEET 1 AA510 LYS C 48 GLN C 49 0 SHEET 2 AA510 GLN C 41 PHE C 45 -1 N PHE C 45 O LYS C 48 SHEET 3 AA510 THR C 66 LEU C 71 -1 O HIS C 68 N ILE C 44 SHEET 4 AA510 GLN C 2 THR C 7 1 N LYS C 6 O LEU C 67 SHEET 5 AA510 LYS C 11 GLU C 16 -1 O LEU C 15 N ILE C 3 SHEET 6 AA510 LEU D 17 ASP D 23 1 O LEU D 17 N THR C 12 SHEET 7 AA510 THR D 5 THR D 11 -1 N VAL D 8 O GLN D 20 SHEET 8 AA510 THR D 55 VAL D 58 1 O PHE D 56 N THR D 11 SHEET 9 AA510 THR D 35 LEU D 37 -1 N TYR D 36 O PHE D 57 SHEET 10 AA510 ALA D 40 ASP D 41 -1 O ALA D 40 N LEU D 37 SHEET 1 AA6 2 GLN D 98 VAL D 99 0 SHEET 2 AA6 2 LEU D 102 THR D 103 -1 O LEU D 102 N VAL D 99 SHEET 1 AA7 4 LYS D 196 THR D 201 0 SHEET 2 AA7 4 LYS D 183 VAL D 189 -1 N ARG D 184 O LEU D 200 SHEET 3 AA7 4 ASP D 230 GLU D 239 -1 O VAL D 236 N VAL D 185 SHEET 4 AA7 4 VAL D 221 PRO D 224 -1 N ILE D 223 O ALA D 231 SHEET 1 AA8 4 LYS D 196 THR D 201 0 SHEET 2 AA8 4 LYS D 183 VAL D 189 -1 N ARG D 184 O LEU D 200 SHEET 3 AA8 4 ASP D 230 GLU D 239 -1 O VAL D 236 N VAL D 185 SHEET 4 AA8 4 SER D 310 THR D 312 -1 O TYR D 311 N GLN D 238 SHEET 1 AA9 7 MET D 207 MET D 209 0 SHEET 2 AA9 7 PHE D 242 LEU D 254 1 O SER D 246 N TYR D 208 SHEET 3 AA9 7 TYR D 297 LYS D 307 -1 O VAL D 304 N MET D 245 SHEET 4 AA9 7 CYS D 261 ASN D 268 -1 N ASN D 263 O ASP D 303 SHEET 5 AA9 7 CYS D 271 ALA D 279 -1 O ILE D 277 N ALA D 262 SHEET 6 AA9 7 LEU D 283 ASP D 287 -1 O TYR D 284 N THR D 278 SHEET 7 AA9 7 HIS D 290 MET D 294 -1 O HIS D 290 N ASP D 287 SHEET 1 AB1 5 THR E 12 GLU E 16 0 SHEET 2 AB1 5 GLN E 2 LYS E 6 -1 N VAL E 5 O ILE E 13 SHEET 3 AB1 5 THR E 66 LEU E 71 1 O LEU E 69 N LYS E 6 SHEET 4 AB1 5 GLN E 41 PHE E 45 -1 N ILE E 44 O HIS E 68 SHEET 5 AB1 5 5MW E 48 GLN E 49 -1 O 5MW E 48 N PHE E 45 LINK SG CYS A 112 C2 AYE B 76 1555 1555 1.67 LINK NE2 HIS A 192 NI NI A 402 1555 1555 1.97 LINK NE2 HIS A 320 NI NI A 402 1555 1555 1.97 LINK C GLY B 47 N 5MW B 48 1555 1555 1.33 LINK C 5MW B 48 N GLN B 49 1555 1555 1.33 LINK N5 5MW B 48 C GLY C 75 1555 1555 1.34 LINK C GLY B 75 N1 AYE B 76 1555 1555 1.42 LINK SG CYS D 112 C2 AYE E 76 1555 1555 1.66 LINK C GLY E 47 N 5MW E 48 1555 1555 1.33 LINK C 5MW E 48 N GLN E 49 1555 1555 1.33 LINK N5 5MW E 48 C GLY F 75 1555 1555 1.33 LINK C GLY E 75 N1 AYE E 76 1555 1555 1.42 SITE 1 AC1 4 TRP A 107 ASP A 287 GLY A 288 ALA A 289 SITE 1 AC2 3 HIS A 192 HIS A 320 HOH A 522 SITE 1 AC3 10 TRP D 107 ASN D 110 CYS D 112 TYR D 113 SITE 2 AC3 10 LEU D 163 GLY D 164 TYR D 265 GLY D 272 SITE 3 AC3 10 LEU E 73 ARG E 74 SITE 1 AC4 16 THR D 75 ASP D 77 GLU D 78 TRP D 107 SITE 2 AC4 16 ASN D 110 ASN D 111 TYR D 113 LEU D 114 SITE 3 AC4 16 SER D 115 SER D 116 LEU D 163 GLY D 272 SITE 4 AC4 16 TYR D 274 GLY E 75 ARG F 42 GLY F 47 CRYST1 72.981 68.239 119.021 90.00 103.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013702 0.000000 0.003216 0.00000 SCALE2 0.000000 0.014654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008630 0.00000 MASTER 344 0 6 29 58 0 9 6 0 0 0 74 END