HEADER TRANSFERASE 03-OCT-15 5E3P TITLE CRYSTAL STRUCTURE OF DAPD FROM CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- COMPND 3 SUCCINYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE,THP COMPND 6 SUCCINYLTRANSFERASE,TETRAHYDROPICOLINATE SUCCINYLASE; COMPND 7 EC: 2.3.1.117; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025; SOURCE 5 GENE: DAPD, CGL1106, CG1256; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS TRANSFERASE, CORYNEBACTERIUM GLUTAMICUM, L-LYSINE EXPDTA X-RAY DIFFRACTION AUTHOR H.-Y.SAGONG,K.-J.KIM REVDAT 3 09-SEP-20 5E3P 1 TITLE REMARK REVDAT 2 30-DEC-15 5E3P 1 JRNL REVDAT 1 04-NOV-15 5E3P 0 JRNL AUTH H.Y.SAGONG,K.J.KIM JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL CHARACTERIZATION OF JRNL TITL 2 TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE FROM JRNL TITL 3 CORYNEBACTERIUM GLUTAMICUM. JRNL REF J.AGRIC.FOOD CHEM. V. 63 10641 2015 JRNL REFN ESSN 1520-5118 JRNL PMID 26602189 JRNL DOI 10.1021/ACS.JAFC.5B04785 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 24585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2140 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2036 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2910 ; 1.894 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4660 ; 1.054 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 7.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;29.959 ;23.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 323 ;14.225 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;22.173 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2452 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 481 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 3.139 ; 3.163 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1134 ; 3.127 ; 3.159 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1417 ; 4.401 ; 4.725 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIPOSITIONS REMARK 4 REMARK 4 5E3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24585 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 78.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3FSX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 200, LI2SO4, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.40750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.40750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.40750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.40750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.40750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.40750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -91.00100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -45.50050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -78.80918 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 286 REMARK 465 VAL A 287 REMARK 465 VAL A 288 REMARK 465 GLU A 289 REMARK 465 LEU A 290 REMARK 465 ASN A 291 REMARK 465 THR A 292 REMARK 465 ALA A 293 REMARK 465 LEU A 294 REMARK 465 HIS A 295 REMARK 465 SER A 296 REMARK 465 ASN A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 57 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 66 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 84.84 -42.80 REMARK 500 HIS A 82 5.37 80.95 REMARK 500 ASP A 192 127.51 -32.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E3Q RELATED DB: PDB REMARK 900 RELATED ID: 5E3R RELATED DB: PDB DBREF 5E3P A 2 297 UNP Q8NRE3 DAPD_CORGL 2 297 SEQADV 5E3P ILE A 57 UNP Q8NRE3 THR 57 CONFLICT SEQADV 5E3P HIS A 298 UNP Q8NRE3 EXPRESSION TAG SEQADV 5E3P HIS A 299 UNP Q8NRE3 EXPRESSION TAG SEQADV 5E3P HIS A 300 UNP Q8NRE3 EXPRESSION TAG SEQADV 5E3P HIS A 301 UNP Q8NRE3 EXPRESSION TAG SEQADV 5E3P HIS A 302 UNP Q8NRE3 EXPRESSION TAG SEQADV 5E3P HIS A 303 UNP Q8NRE3 EXPRESSION TAG SEQRES 1 A 302 THR THR ALA SER ALA THR GLY ILE ALA THR LEU THR SER SEQRES 2 A 302 THR GLY ASP VAL LEU ASP VAL TRP TYR PRO GLU ILE GLY SEQRES 3 A 302 SER THR ASP GLN SER ALA LEU THR PRO LEU GLU GLY VAL SEQRES 4 A 302 ASP GLU ASP ARG ASN VAL THR ARG LYS ILE VAL THR THR SEQRES 5 A 302 THR ILE ASP ILE ASP ALA ALA PRO THR ASP THR TYR ASP SEQRES 6 A 302 ALA TRP LEU ARG LEU HIS LEU LEU SER HIS ARG VAL PHE SEQRES 7 A 302 ARG PRO HIS THR ILE ASN LEU ASP GLY ILE PHE GLY LEU SEQRES 8 A 302 LEU ASN ASN VAL VAL TRP THR ASN PHE GLY PRO CYS ALA SEQRES 9 A 302 VAL ASP GLY PHE ALA LEU THR ARG ALA ARG LEU SER ARG SEQRES 10 A 302 ARG GLY GLN VAL THR VAL TYR SER VAL ASP LYS PHE PRO SEQRES 11 A 302 ARG MET VAL ASP TYR VAL VAL PRO SER GLY VAL ARG ILE SEQRES 12 A 302 GLY ASP ALA ASP ARG VAL ARG LEU GLY ALA TYR LEU ALA SEQRES 13 A 302 ASP GLY THR THR VAL MET HIS GLU GLY PHE VAL ASN PHE SEQRES 14 A 302 ASN ALA GLY THR LEU GLY ALA SER MET VAL GLU GLY ARG SEQRES 15 A 302 ILE SER ALA GLY VAL THR VAL ASP ASP GLY THR ASP VAL SEQRES 16 A 302 GLY GLY GLY ALA SER ILE MET GLY THR LEU SER GLY GLY SEQRES 17 A 302 GLY GLN HIS VAL ILE SER LEU GLY LYS ARG CYS LEU LEU SEQRES 18 A 302 GLY ALA ASN SER GLY CYS GLY ILE PRO LEU GLY ASP ASP SEQRES 19 A 302 CYS ILE ILE GLU ALA GLY LEU TYR ILE THR ALA GLY THR SEQRES 20 A 302 LYS VAL LEU PHE ASP GLY SER LEU HIS LYS ALA SER THR SEQRES 21 A 302 LEU ALA GLY SER ASN GLY LEU ILE PHE ARG ARG ASP SER SEQRES 22 A 302 VAL SER GLY GLN VAL VAL ALA VAL PRO ASN THR LYS VAL SEQRES 23 A 302 VAL GLU LEU ASN THR ALA LEU HIS SER ASN HIS HIS HIS SEQRES 24 A 302 HIS HIS HIS HET PG4 A 401 13 HET SO4 A 402 5 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SO4 SULFATE ION FORMUL 2 PG4 C8 H18 O5 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *84(H2 O) HELIX 1 AA1 LEU A 34 GLU A 38 5 5 HELIX 2 AA2 ASP A 63 HIS A 76 1 14 HELIX 3 AA3 GLY A 88 LEU A 92 5 5 HELIX 4 AA4 GLY A 108 SER A 117 1 10 HELIX 5 AA5 ARG A 132 TYR A 136 5 5 HELIX 6 AA6 ASP A 146 VAL A 150 5 5 HELIX 7 AA7 SER A 260 ALA A 263 5 4 SHEET 1 AA1 4 VAL A 18 TRP A 22 0 SHEET 2 AA1 4 THR A 3 THR A 13 -1 N THR A 11 O ASP A 20 SHEET 3 AA1 4 VAL A 46 ASP A 56 -1 O VAL A 51 N GLY A 8 SHEET 4 AA1 4 GLY A 39 ASP A 41 -1 N ASP A 41 O VAL A 46 SHEET 1 AA2 3 GLY A 102 ALA A 105 0 SHEET 2 AA2 3 VAL A 96 THR A 99 -1 N VAL A 97 O CYS A 104 SHEET 3 AA2 3 VAL A 124 ASP A 128 -1 O TYR A 125 N TRP A 98 SHEET 1 AA310 ARG A 143 ILE A 144 0 SHEET 2 AA310 THR A 161 VAL A 162 1 O VAL A 162 N ARG A 143 SHEET 3 AA310 MET A 179 VAL A 180 1 O VAL A 180 N THR A 161 SHEET 4 AA310 ASP A 195 VAL A 196 1 O VAL A 196 N MET A 179 SHEET 5 AA310 LEU A 221 LEU A 222 1 O LEU A 222 N ASP A 195 SHEET 6 AA310 ILE A 237 ILE A 238 1 O ILE A 238 N LEU A 221 SHEET 7 AA310 LEU A 268 ASP A 273 1 O PHE A 270 N ILE A 237 SHEET 8 AA310 GLN A 278 PRO A 283 -1 O VAL A 280 N ARG A 271 SHEET 9 AA310 LYS A 249 PHE A 252 1 N LEU A 251 O VAL A 279 SHEET 10 AA310 SER A 255 LYS A 258 -1 O HIS A 257 N VAL A 250 SHEET 1 AA4 4 TYR A 155 LEU A 156 0 SHEET 2 AA4 4 GLY A 173 THR A 174 1 O THR A 174 N TYR A 155 SHEET 3 AA4 4 THR A 189 VAL A 190 1 O VAL A 190 N GLY A 173 SHEET 4 AA4 4 SER A 215 LEU A 216 1 O LEU A 216 N THR A 189 SHEET 1 AA5 5 PHE A 167 VAL A 168 0 SHEET 2 AA5 5 ARG A 183 ILE A 184 1 O ILE A 184 N PHE A 167 SHEET 3 AA5 5 SER A 201 ILE A 202 1 O ILE A 202 N ARG A 183 SHEET 4 AA5 5 GLY A 227 CYS A 228 1 O CYS A 228 N SER A 201 SHEET 5 AA5 5 TYR A 243 ILE A 244 1 O ILE A 244 N GLY A 227 SITE 1 AC1 9 GLY A 241 LEU A 242 LYS A 249 ARG A 272 SITE 2 AC1 9 SER A 274 GLY A 277 HOH A 507 HOH A 508 SITE 3 AC1 9 HOH A 552 SITE 1 AC2 6 VAL A 106 GLY A 108 PHE A 109 ALA A 110 SITE 2 AC2 6 LYS A 218 ARG A 219 CRYST1 91.001 91.001 156.815 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010989 0.006344 0.000000 0.00000 SCALE2 0.000000 0.012689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006377 0.00000 MASTER 366 0 2 7 26 0 5 6 0 0 0 24 END