HEADER LYASE 01-OCT-15 5E2M TITLE CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE ISOZYME I WITH 3- TITLE 2 (CYCLOOCTYLAMINO)-2,5,6-TRIFLUORO-4-[(2-HYDROXYETHYL) TITLE 3 SULFONYL]BENZENESULFONAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HUMAN CARBONIC ANHYDRASE I; COMPND 5 SYNONYM: CARBONATE DEHYDRATASE I,CARBONIC ANHYDRASE B,CAB,CARBONIC COMPND 6 ANHYDRASE I,CA-I; COMPND 7 EC: 4.2.1.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS DRUG DESIGN, CARBONIC ANHYDRASE, BENZENESULFONAMIDE, METAL-BINDING, KEYWDS 2 LYASE-LYASE INHIBITOR COMPLEX, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MANAKOVA,A.SMIRNOV,S.GRAZULIS REVDAT 6 10-JUL-19 5E2M 1 REMARK REVDAT 5 20-FEB-19 5E2M 1 REMARK LINK REVDAT 4 07-MAR-18 5E2M 1 REMARK REVDAT 3 01-FEB-17 5E2M 1 JRNL REVDAT 2 18-JAN-17 5E2M 1 JRNL REVDAT 1 05-OCT-16 5E2M 0 JRNL AUTH A.ZUBRIENE,A.SMIRNOV,V.DUDUTIENE,D.D.TIMM,J.MATULIENE, JRNL AUTH 2 V.MICHAILOVIENE,A.ZAKSAUSKAS,E.MANAKOVA,S.GRAZULIS,D.MATULIS JRNL TITL INTRINSIC THERMODYNAMICS AND STRUCTURES OF 2,4- AND JRNL TITL 2 3,4-SUBSTITUTED FLUORINATED BENZENESULFONAMIDES BINDING TO JRNL TITL 3 CARBONIC ANHYDRASES. JRNL REF CHEMMEDCHEM V. 12 161 2017 JRNL REFN ESSN 1860-7187 JRNL PMID 28001003 JRNL DOI 10.1002/CMDC.201600509 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 103359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 10389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 625 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 535 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4331 ; 0.028 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5920 ; 2.667 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 7.103 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;39.977 ;24.715 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 666 ;12.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.218 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3367 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5E2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000213711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.826606 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 119.722 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03500 REMARK 200 FOR THE DATA SET : 34.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : 0.21600 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2CAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION BUFFER CONTAINS 0.1M REMARK 280 TRISHCL (PH 8.5), 0.2M AMMONIUM ACETATE, 28% OF PEG4000, PH 8.4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.63200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.86100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.86100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.63200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 5 CE2 CE3 CZ2 CZ3 CH2 REMARK 470 GLN A 15 OE1 NE2 REMARK 470 LYS A 39 CD CE NZ REMARK 470 LYS A 45 CD CE NZ REMARK 470 ASP B 4 CG OD1 OD2 REMARK 470 ASP B 9 CB CG OD1 OD2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 LYS B 34 NZ REMARK 470 LYS B 137 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TRP A 5 CD2 REMARK 480 LEU A 19 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 72 NH1 ARG B 89 1.46 REMARK 500 O HOH A 421 O HOH A 515 2.12 REMARK 500 O HOH B 429 O HOH B 600 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 64 CG HIS A 64 CD2 0.059 REMARK 500 HIS A 119 CG HIS A 119 CD2 0.066 REMARK 500 HIS A 200 CG HIS A 200 CD2 0.081 REMARK 500 GLU B 71 C ASP B 72 N 0.234 REMARK 500 HIS B 119 CG HIS B 119 CD2 0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 71 CA - C - N ANGL. DEV. = -23.0 DEGREES REMARK 500 GLU B 71 O - C - N ANGL. DEV. = 22.2 DEGREES REMARK 500 LYS B 113 CD - CE - NZ ANGL. DEV. = -23.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 57 -57.47 -120.31 REMARK 500 LYS A 57 -55.74 -120.31 REMARK 500 SER A 65 -169.55 -164.01 REMARK 500 ASN A 75 37.60 -98.97 REMARK 500 GLU A 106 -60.52 -90.16 REMARK 500 ASN A 244 34.13 -162.18 REMARK 500 ASN B 11 13.20 -140.35 REMARK 500 LYS B 57 -51.25 -122.90 REMARK 500 LYS B 57 -55.03 -122.90 REMARK 500 SER B 65 -165.42 -161.20 REMARK 500 ASP B 72 63.33 -119.60 REMARK 500 ASN B 75 39.95 -99.28 REMARK 500 ASN B 244 37.29 -155.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 103.1 REMARK 620 3 HIS A 119 ND1 113.2 97.8 REMARK 620 4 V14 A 302 N10 121.9 107.7 109.9 REMARK 620 5 V14 A 302 N10 109.9 111.3 119.7 12.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 94 NE2 REMARK 620 2 HIS B 96 NE2 103.6 REMARK 620 3 HIS B 119 ND1 112.5 96.9 REMARK 620 4 V14 B 302 N10 114.4 111.6 115.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V14 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V14 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP B 72 and ARG B REMARK 800 89 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DOG RELATED DB: PDB REMARK 900 RELATED ID: 5DOH RELATED DB: PDB REMARK 900 RELATED ID: 5DRS RELATED DB: PDB DBREF 5E2M A 2 260 UNP P00915 CAH1_HUMAN 3 261 DBREF 5E2M B 2 260 UNP P00915 CAH1_HUMAN 3 261 SEQADV 5E2M MET A 1 UNP P00915 INITIATING METHIONINE SEQADV 5E2M MET B 1 UNP P00915 INITIATING METHIONINE SEQRES 1 A 260 MET SER PRO ASP TRP GLY TYR ASP ASP LYS ASN GLY PRO SEQRES 2 A 260 GLU GLN TRP SER LYS LEU TYR PRO ILE ALA ASN GLY ASN SEQRES 3 A 260 ASN GLN SER PRO VAL ASP ILE LYS THR SER GLU THR LYS SEQRES 4 A 260 HIS ASP THR SER LEU LYS PRO ILE SER VAL SER TYR ASN SEQRES 5 A 260 PRO ALA THR ALA LYS GLU ILE ILE ASN VAL GLY HIS SER SEQRES 6 A 260 PHE HIS VAL ASN PHE GLU ASP ASN ASP ASN ARG SER VAL SEQRES 7 A 260 LEU LYS GLY GLY PRO PHE SER ASP SER TYR ARG LEU PHE SEQRES 8 A 260 GLN PHE HIS PHE HIS TRP GLY SER THR ASN GLU HIS GLY SEQRES 9 A 260 SER GLU HIS THR VAL ASP GLY VAL LYS TYR SER ALA GLU SEQRES 10 A 260 LEU HIS VAL ALA HIS TRP ASN SER ALA LYS TYR SER SER SEQRES 11 A 260 LEU ALA GLU ALA ALA SER LYS ALA ASP GLY LEU ALA VAL SEQRES 12 A 260 ILE GLY VAL LEU MET LYS VAL GLY GLU ALA ASN PRO LYS SEQRES 13 A 260 LEU GLN LYS VAL LEU ASP ALA LEU GLN ALA ILE LYS THR SEQRES 14 A 260 LYS GLY LYS ARG ALA PRO PHE THR ASN PHE ASP PRO SER SEQRES 15 A 260 THR LEU LEU PRO SER SER LEU ASP PHE TRP THR TYR PRO SEQRES 16 A 260 GLY SER LEU THR HIS PRO PRO LEU TYR GLU SER VAL THR SEQRES 17 A 260 TRP ILE ILE CYS LYS GLU SER ILE SER VAL SER SER GLU SEQRES 18 A 260 GLN LEU ALA GLN PHE ARG SER LEU LEU SER ASN VAL GLU SEQRES 19 A 260 GLY ASP ASN ALA VAL PRO MET GLN HIS ASN ASN ARG PRO SEQRES 20 A 260 THR GLN PRO LEU LYS GLY ARG THR VAL ARG ALA SER PHE SEQRES 1 B 260 MET SER PRO ASP TRP GLY TYR ASP ASP LYS ASN GLY PRO SEQRES 2 B 260 GLU GLN TRP SER LYS LEU TYR PRO ILE ALA ASN GLY ASN SEQRES 3 B 260 ASN GLN SER PRO VAL ASP ILE LYS THR SER GLU THR LYS SEQRES 4 B 260 HIS ASP THR SER LEU LYS PRO ILE SER VAL SER TYR ASN SEQRES 5 B 260 PRO ALA THR ALA LYS GLU ILE ILE ASN VAL GLY HIS SER SEQRES 6 B 260 PHE HIS VAL ASN PHE GLU ASP ASN ASP ASN ARG SER VAL SEQRES 7 B 260 LEU LYS GLY GLY PRO PHE SER ASP SER TYR ARG LEU PHE SEQRES 8 B 260 GLN PHE HIS PHE HIS TRP GLY SER THR ASN GLU HIS GLY SEQRES 9 B 260 SER GLU HIS THR VAL ASP GLY VAL LYS TYR SER ALA GLU SEQRES 10 B 260 LEU HIS VAL ALA HIS TRP ASN SER ALA LYS TYR SER SER SEQRES 11 B 260 LEU ALA GLU ALA ALA SER LYS ALA ASP GLY LEU ALA VAL SEQRES 12 B 260 ILE GLY VAL LEU MET LYS VAL GLY GLU ALA ASN PRO LYS SEQRES 13 B 260 LEU GLN LYS VAL LEU ASP ALA LEU GLN ALA ILE LYS THR SEQRES 14 B 260 LYS GLY LYS ARG ALA PRO PHE THR ASN PHE ASP PRO SER SEQRES 15 B 260 THR LEU LEU PRO SER SER LEU ASP PHE TRP THR TYR PRO SEQRES 16 B 260 GLY SER LEU THR HIS PRO PRO LEU TYR GLU SER VAL THR SEQRES 17 B 260 TRP ILE ILE CYS LYS GLU SER ILE SER VAL SER SER GLU SEQRES 18 B 260 GLN LEU ALA GLN PHE ARG SER LEU LEU SER ASN VAL GLU SEQRES 19 B 260 GLY ASP ASN ALA VAL PRO MET GLN HIS ASN ASN ARG PRO SEQRES 20 B 260 THR GLN PRO LEU LYS GLY ARG THR VAL ARG ALA SER PHE HET ZN A 301 1 HET V14 A 302 56 HET ACT A 303 4 HET ZN B 301 1 HET V14 B 302 28 HET PEG B 303 7 HET PEG B 304 7 HETNAM ZN ZINC ION HETNAM V14 3-(CYCLOOCTYLAMINO)-2,5,6-TRIFLUORO-4-[(2- HETNAM 2 V14 HYDROXYETHYL)SULFONYL]BENZENESULFONAMIDE HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 ZN 2(ZN 2+) FORMUL 4 V14 2(C16 H23 F3 N2 O5 S2) FORMUL 5 ACT C2 H3 O2 1- FORMUL 8 PEG 2(C4 H10 O3) FORMUL 10 HOH *535(H2 O) HELIX 1 AA1 GLY A 12 LEU A 19 5 8 HELIX 2 AA2 TYR A 20 GLY A 25 5 6 HELIX 3 AA3 LYS A 34 THR A 38 5 5 HELIX 4 AA4 ASN A 52 ALA A 54 5 3 HELIX 5 AA5 SER A 130 ALA A 135 1 6 HELIX 6 AA6 ASN A 154 LYS A 156 5 3 HELIX 7 AA7 LEU A 157 LEU A 164 1 8 HELIX 8 AA8 GLN A 165 ILE A 167 5 3 HELIX 9 AA9 ASP A 180 LEU A 185 5 6 HELIX 10 AB1 SER A 219 SER A 228 1 10 HELIX 11 AB2 TYR B 20 GLY B 25 5 6 HELIX 12 AB3 LYS B 34 THR B 38 5 5 HELIX 13 AB4 ASN B 52 ALA B 54 5 3 HELIX 14 AB5 SER B 130 ALA B 135 1 6 HELIX 15 AB6 ASN B 154 LYS B 156 5 3 HELIX 16 AB7 LEU B 157 LEU B 164 1 8 HELIX 17 AB8 GLN B 165 ILE B 167 5 3 HELIX 18 AB9 ASP B 180 LEU B 185 5 6 HELIX 19 AC1 SER B 219 SER B 228 1 10 SHEET 1 AA1 2 ASP A 32 ILE A 33 0 SHEET 2 AA1 2 THR A 108 VAL A 109 1 O THR A 108 N ILE A 33 SHEET 1 AA210 LYS A 39 HIS A 40 0 SHEET 2 AA210 ARG A 257 ALA A 258 1 O ALA A 258 N LYS A 39 SHEET 3 AA210 PHE A 191 GLY A 196 -1 N THR A 193 O ARG A 257 SHEET 4 AA210 VAL A 207 CYS A 212 -1 O VAL A 207 N GLY A 196 SHEET 5 AA210 LEU A 141 VAL A 150 1 N GLY A 145 O ILE A 210 SHEET 6 AA210 ALA A 116 ASN A 124 -1 N ALA A 116 O MET A 148 SHEET 7 AA210 TYR A 88 TRP A 97 -1 N HIS A 94 O HIS A 119 SHEET 8 AA210 PHE A 66 PHE A 70 -1 N VAL A 68 O PHE A 93 SHEET 9 AA210 ALA A 56 ASN A 61 -1 N LYS A 57 O ASN A 69 SHEET 10 AA210 ARG A 173 PRO A 175 -1 O ALA A 174 N ILE A 59 SHEET 1 AA3 6 ILE A 47 SER A 50 0 SHEET 2 AA3 6 VAL A 78 GLY A 81 -1 O LYS A 80 N SER A 48 SHEET 3 AA3 6 TYR A 88 TRP A 97 -1 O TYR A 88 N LEU A 79 SHEET 4 AA3 6 ALA A 116 ASN A 124 -1 O HIS A 119 N HIS A 94 SHEET 5 AA3 6 LEU A 141 VAL A 150 -1 O MET A 148 N ALA A 116 SHEET 6 AA3 6 ILE A 216 VAL A 218 1 O ILE A 216 N LYS A 149 SHEET 1 AA4 2 ASP B 32 ILE B 33 0 SHEET 2 AA4 2 THR B 108 VAL B 109 1 O THR B 108 N ILE B 33 SHEET 1 AA510 LYS B 39 HIS B 40 0 SHEET 2 AA510 ARG B 257 ALA B 258 1 O ALA B 258 N LYS B 39 SHEET 3 AA510 PHE B 191 GLY B 196 -1 N THR B 193 O ARG B 257 SHEET 4 AA510 VAL B 207 CYS B 212 -1 O VAL B 207 N GLY B 196 SHEET 5 AA510 LEU B 141 VAL B 150 1 N GLY B 145 O ILE B 210 SHEET 6 AA510 ALA B 116 TRP B 123 -1 N VAL B 120 O ILE B 144 SHEET 7 AA510 TYR B 88 TRP B 97 -1 N HIS B 94 O HIS B 119 SHEET 8 AA510 PHE B 66 PHE B 70 -1 N VAL B 68 O PHE B 93 SHEET 9 AA510 ALA B 56 ASN B 61 -1 N GLU B 58 O ASN B 69 SHEET 10 AA510 ARG B 173 PRO B 175 -1 O ALA B 174 N ILE B 59 SHEET 1 AA6 6 ILE B 47 SER B 50 0 SHEET 2 AA6 6 VAL B 78 GLY B 81 -1 O LYS B 80 N SER B 48 SHEET 3 AA6 6 TYR B 88 TRP B 97 -1 O TYR B 88 N LEU B 79 SHEET 4 AA6 6 ALA B 116 TRP B 123 -1 O HIS B 119 N HIS B 94 SHEET 5 AA6 6 LEU B 141 VAL B 150 -1 O ILE B 144 N VAL B 120 SHEET 6 AA6 6 ILE B 216 VAL B 218 1 O ILE B 216 N LYS B 149 LINK NE2 HIS A 94 ZN ZN A 301 1555 1555 2.00 LINK NE2 HIS A 96 ZN ZN A 301 1555 1555 2.03 LINK ND1 HIS A 119 ZN ZN A 301 1555 1555 2.00 LINK NE2 HIS B 94 ZN ZN B 301 1555 1555 1.96 LINK NE2 HIS B 96 ZN ZN B 301 1555 1555 2.01 LINK ND1 HIS B 119 ZN ZN B 301 1555 1555 2.02 LINK ZN ZN A 301 N10AV14 A 302 1555 1555 1.94 LINK ZN ZN A 301 N10BV14 A 302 1555 1555 1.82 LINK ZN ZN B 301 N10 V14 B 302 1555 1555 1.86 CISPEP 1 SER A 29 PRO A 30 0 0.32 CISPEP 2 PRO A 201 PRO A 202 0 19.37 CISPEP 3 SER B 29 PRO B 30 0 -0.98 CISPEP 4 PRO B 201 PRO B 202 0 15.15 SITE 1 AC1 4 HIS A 94 HIS A 96 HIS A 119 V14 A 302 SITE 1 AC2 19 HIS A 64 HIS A 67 PHE A 91 HIS A 94 SITE 2 AC2 19 HIS A 96 HIS A 119 LEU A 131 ALA A 135 SITE 3 AC2 19 LEU A 198 THR A 199 HIS A 200 PRO A 201 SITE 4 AC2 19 PRO A 202 TRP A 209 ZN A 301 ACT A 303 SITE 5 AC2 19 HOH A 489 HOH A 518 ALA B 132 SITE 1 AC3 4 TYR A 204 V14 A 302 HOH A 402 TYR B 204 SITE 1 AC4 4 HIS B 94 HIS B 96 HIS B 119 V14 B 302 SITE 1 AC5 14 HIS B 64 HIS B 67 GLN B 92 HIS B 94 SITE 2 AC5 14 HIS B 96 HIS B 119 ALA B 135 LEU B 198 SITE 3 AC5 14 THR B 199 HIS B 200 PRO B 201 PRO B 202 SITE 4 AC5 14 ZN B 301 HOH B 591 SITE 1 AC6 7 LYS A 172 HOH A 413 HOH A 415 ASN B 52 SITE 2 AC6 7 PRO B 53 ALA B 54 ASN B 178 SITE 1 AC7 8 ASP B 74 ASN B 75 ARG B 76 ALA B 153 SITE 2 AC7 8 PRO B 155 GLN B 158 HOH B 506 HOH B 602 SITE 1 AC8 15 PHE B 70 GLU B 71 ASN B 73 ASP B 74 SITE 2 AC8 15 ASN B 75 SER B 77 TYR B 88 LEU B 90 SITE 3 AC8 15 PHE B 91 HIS B 122 TRP B 123 HOH B 401 SITE 4 AC8 15 HOH B 430 HOH B 567 HOH B 569 CRYST1 63.264 71.710 119.722 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008353 0.00000 MASTER 432 0 7 19 36 0 20 6 0 0 0 40 END