HEADER HYDROLASE 15-SEP-15 5DR1 TITLE ENDOTHIAPEPSIN IN COMPLEX WITH FRAGMENT 278 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHIAPEPSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 90-419; COMPND 5 SYNONYM: ASPARTATE PROTEASE; COMPND 6 EC: 3.4.23.22 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPHONECTRIA PARASITICA; SOURCE 3 ORGANISM_COMMON: CHESNUT BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5116 KEYWDS FRAGMENT SCREENING, HYDROLASE, INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR J.SCHIEBEL,A.HEINE,G.KLEBE REVDAT 1 28-SEP-16 5DR1 0 JRNL AUTH J.SCHIEBEL,A.HEINE,G.KLEBE JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING OF AN ENTIRE LIBRARY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.KOESTER,T.CRAAN,S.BRASS,C.HERHAUS,M.ZENTGRAF,L.NEUMANN, REMARK 1 AUTH 2 A.HEINE,G.KLEBE REMARK 1 TITL A SMALL NONRULE OF 3 COMPATIBLE FRAGMENT LIBRARY PROVIDES REMARK 1 TITL 2 HIGH HIT RATE OF ENDOTHIAPEPSIN CRYSTAL STRUCTURES WITH REMARK 1 TITL 3 VARIOUS FRAGMENT CHEMOTYPES. REMARK 1 REF J. MED. CHEM. V. 54 7784 2011 REMARK 1 REFN ISSN 1520-4804 REMARK 1 PMID 21972967 REMARK 1 DOI 10.1021/JM200642W REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1492 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 57303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5001 - 3.9312 0.99 2792 147 0.1678 0.1656 REMARK 3 2 3.9312 - 3.1208 0.98 2694 142 0.1583 0.1499 REMARK 3 3 3.1208 - 2.7265 0.99 2713 143 0.1499 0.1449 REMARK 3 4 2.7265 - 2.4773 0.99 2746 145 0.1461 0.1868 REMARK 3 5 2.4773 - 2.2997 0.99 2715 142 0.1434 0.1519 REMARK 3 6 2.2997 - 2.1642 0.99 2717 143 0.1382 0.1706 REMARK 3 7 2.1642 - 2.0558 1.00 2700 142 0.1322 0.1586 REMARK 3 8 2.0558 - 1.9663 1.00 2709 143 0.1392 0.1330 REMARK 3 9 1.9663 - 1.8906 0.99 2751 145 0.1428 0.1638 REMARK 3 10 1.8906 - 1.8254 1.00 2728 143 0.1385 0.1780 REMARK 3 11 1.8254 - 1.7683 1.00 2742 145 0.1430 0.1821 REMARK 3 12 1.7683 - 1.7178 1.00 2735 144 0.1527 0.1629 REMARK 3 13 1.7178 - 1.6725 1.00 2704 142 0.1573 0.1878 REMARK 3 14 1.6725 - 1.6317 1.00 2746 145 0.1626 0.1834 REMARK 3 15 1.6317 - 1.5946 1.00 2746 144 0.1673 0.2051 REMARK 3 16 1.5946 - 1.5607 1.00 2692 142 0.1734 0.1944 REMARK 3 17 1.5607 - 1.5295 1.00 2724 143 0.1854 0.2069 REMARK 3 18 1.5295 - 1.5006 1.00 2738 144 0.1956 0.2520 REMARK 3 19 1.5006 - 1.4738 1.00 2705 143 0.2049 0.2466 REMARK 3 20 1.4738 - 1.4488 0.97 2640 139 0.2061 0.2220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2590 REMARK 3 ANGLE : 1.205 3561 REMARK 3 CHIRALITY : 0.070 417 REMARK 3 PLANARITY : 0.006 467 REMARK 3 DIHEDRAL : 10.890 857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:62) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4712 -9.1931 14.7464 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0816 REMARK 3 T33: 0.0757 T12: -0.0049 REMARK 3 T13: 0.0125 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.6083 L22: 1.0794 REMARK 3 L33: 1.4088 L12: 0.1550 REMARK 3 L13: 0.0678 L23: -0.1885 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.0631 S13: 0.0439 REMARK 3 S21: 0.0990 S22: -0.0194 S23: 0.0631 REMARK 3 S31: 0.0048 S32: -0.1094 S33: 0.0131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 63:81) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5387 -2.6831 25.4933 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1140 REMARK 3 T33: 0.0673 T12: -0.0133 REMARK 3 T13: 0.0051 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.1728 L22: 3.0439 REMARK 3 L33: 1.9960 L12: 0.0274 REMARK 3 L13: -0.4006 L23: 0.3329 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: -0.1333 S13: 0.0743 REMARK 3 S21: 0.0754 S22: 0.0659 S23: 0.0903 REMARK 3 S31: -0.0637 S32: -0.1111 S33: -0.0553 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 82:151) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7140 -2.8912 18.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.0881 REMARK 3 T33: 0.0650 T12: 0.0107 REMARK 3 T13: -0.0009 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.0413 L22: 1.0046 REMARK 3 L33: 1.2457 L12: 0.2458 REMARK 3 L13: 0.1492 L23: 0.3176 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.0777 S13: 0.0766 REMARK 3 S21: 0.0505 S22: -0.0028 S23: 0.0187 REMARK 3 S31: -0.0368 S32: -0.0301 S33: 0.0387 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 152:190) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6686 -4.8358 -0.2609 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.0675 REMARK 3 T33: 0.0954 T12: 0.0082 REMARK 3 T13: 0.0101 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.9894 L22: 1.5646 REMARK 3 L33: 1.1875 L12: 0.2147 REMARK 3 L13: 0.0593 L23: -0.3124 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0587 S13: 0.0195 REMARK 3 S21: -0.0796 S22: -0.0391 S23: -0.1385 REMARK 3 S31: 0.0391 S32: 0.1029 S33: 0.0391 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 191:204) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0241 11.0160 -0.3919 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.0707 REMARK 3 T33: 0.1325 T12: -0.0036 REMARK 3 T13: 0.0132 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.5383 L22: 1.0728 REMARK 3 L33: 4.2536 L12: -0.8830 REMARK 3 L13: 2.1400 L23: -1.9346 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.0148 S13: 0.0747 REMARK 3 S21: 0.1432 S22: 0.0409 S23: -0.0250 REMARK 3 S31: -0.3913 S32: -0.0882 S33: 0.0092 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 205:242) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7483 11.0918 -7.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0567 REMARK 3 T33: 0.0782 T12: 0.0065 REMARK 3 T13: 0.0196 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.5541 L22: 1.4065 REMARK 3 L33: 1.3952 L12: -0.0705 REMARK 3 L13: 0.7146 L23: -0.5698 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0828 S13: 0.0447 REMARK 3 S21: -0.0640 S22: -0.0052 S23: -0.0802 REMARK 3 S31: -0.0392 S32: 0.0298 S33: 0.0469 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 243:258) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5178 8.1981 -8.0259 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.1029 REMARK 3 T33: 0.0869 T12: -0.0117 REMARK 3 T13: 0.0226 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.8809 L22: 4.1054 REMARK 3 L33: 2.8065 L12: 1.5369 REMARK 3 L13: 1.8922 L23: -1.4691 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: -0.0851 S13: 0.1597 REMARK 3 S21: 0.1396 S22: 0.0568 S23: 0.1291 REMARK 3 S31: -0.1064 S32: -0.1664 S33: 0.0015 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 259:330) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5233 3.9473 -4.3596 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.0563 REMARK 3 T33: 0.0714 T12: -0.0001 REMARK 3 T13: 0.0144 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.6134 L22: 0.5556 REMARK 3 L33: 0.4161 L12: -0.4175 REMARK 3 L13: 0.4944 L23: -0.1954 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.0234 S13: -0.0209 REMARK 3 S21: 0.0221 S22: -0.0132 S23: -0.0587 REMARK 3 S31: -0.0172 S32: -0.0099 S33: 0.0215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57303 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 42.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE, 24-30% PEG 4000; CRYSTALS OBTAINED BY STREAK-SEEDING, REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.48850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CD CE NZ REMARK 470 LYS A 68 CD CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 LYS A 149 CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 243 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 311 O HOH A 897 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 122.85 -37.42 REMARK 500 ALA A 129 -167.95 -78.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2643 DISTANCE = 6.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5GJ A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PB5 RELATED DB: PDB REMARK 900 RELATED ID: 3PGI RELATED DB: PDB REMARK 900 RELATED ID: 4Y35 RELATED DB: PDB REMARK 900 RELATED ID: 4Y36 RELATED DB: PDB REMARK 900 RELATED ID: 4Y37 RELATED DB: PDB REMARK 900 RELATED ID: 4Y39 RELATED DB: PDB REMARK 900 RELATED ID: 4Y3A RELATED DB: PDB REMARK 900 RELATED ID: 4Y3D RELATED DB: PDB REMARK 900 RELATED ID: 4Y3E RELATED DB: PDB REMARK 900 RELATED ID: 4Y3F RELATED DB: PDB REMARK 900 RELATED ID: 4Y3G RELATED DB: PDB REMARK 900 RELATED ID: 4Y3H RELATED DB: PDB REMARK 900 RELATED ID: 4Y3L RELATED DB: PDB REMARK 900 RELATED ID: 4Y3M RELATED DB: PDB REMARK 900 RELATED ID: 4Y3N RELATED DB: PDB REMARK 900 RELATED ID: 4Y3P RELATED DB: PDB REMARK 900 RELATED ID: 4Y3R RELATED DB: PDB REMARK 900 RELATED ID: 4Y3S RELATED DB: PDB REMARK 900 RELATED ID: 4Y3T RELATED DB: PDB REMARK 900 RELATED ID: 4Y3W RELATED DB: PDB REMARK 900 RELATED ID: 4Y3X RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Z RELATED DB: PDB REMARK 900 RELATED ID: 4Y43 RELATED DB: PDB REMARK 900 RELATED ID: 4Y44 RELATED DB: PDB REMARK 900 RELATED ID: 4Y45 RELATED DB: PDB REMARK 900 RELATED ID: 4Y47 RELATED DB: PDB REMARK 900 RELATED ID: 4Y4A RELATED DB: PDB REMARK 900 RELATED ID: 4Y4B RELATED DB: PDB REMARK 900 RELATED ID: 4Y4C RELATED DB: PDB REMARK 900 RELATED ID: 4Y4E RELATED DB: PDB REMARK 900 RELATED ID: 4Y4T RELATED DB: PDB REMARK 900 RELATED ID: 4Y4U RELATED DB: PDB REMARK 900 RELATED ID: 4Y4W RELATED DB: PDB REMARK 900 RELATED ID: 4Y4X RELATED DB: PDB REMARK 900 RELATED ID: 4Y4Z RELATED DB: PDB REMARK 900 RELATED ID: 4Y50 RELATED DB: PDB REMARK 900 RELATED ID: 4Y51 RELATED DB: PDB REMARK 900 RELATED ID: 4Y53 RELATED DB: PDB REMARK 900 RELATED ID: 4Y54 RELATED DB: PDB REMARK 900 RELATED ID: 4Y56 RELATED DB: PDB REMARK 900 RELATED ID: 4Y57 RELATED DB: PDB REMARK 900 RELATED ID: 4Y58 RELATED DB: PDB REMARK 900 RELATED ID: 4Y5A RELATED DB: PDB REMARK 900 RELATED ID: 4Y5B RELATED DB: PDB REMARK 900 RELATED ID: 4Y5C RELATED DB: PDB REMARK 900 RELATED ID: 4Y5E RELATED DB: PDB REMARK 900 RELATED ID: 4Y5G RELATED DB: PDB REMARK 900 RELATED ID: 4Y5K RELATED DB: PDB REMARK 900 RELATED ID: 4Y5L RELATED DB: PDB REMARK 900 RELATED ID: 4Y5M RELATED DB: PDB REMARK 900 RELATED ID: 4Y5N RELATED DB: PDB REMARK 900 RELATED ID: 4Y5P RELATED DB: PDB REMARK 900 RELATED ID: 4YCK RELATED DB: PDB REMARK 900 RELATED ID: 4YCT RELATED DB: PDB REMARK 900 RELATED ID: 4YCY RELATED DB: PDB REMARK 900 RELATED ID: 4YD3 RELATED DB: PDB REMARK 900 RELATED ID: 4YD4 RELATED DB: PDB REMARK 900 RELATED ID: 4YD5 RELATED DB: PDB REMARK 900 RELATED ID: 4YD6 RELATED DB: PDB REMARK 900 RELATED ID: 4YD7 RELATED DB: PDB REMARK 900 RELATED ID: 4Y48 RELATED DB: PDB REMARK 900 RELATED ID: 4Y4J RELATED DB: PDB REMARK 900 RELATED ID: 4Y4G RELATED DB: PDB REMARK 900 RELATED ID: 4Y4D RELATED DB: PDB REMARK 900 RELATED ID: 4Y38 RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Y RELATED DB: PDB REMARK 900 RELATED ID: 4Y3J RELATED DB: PDB REMARK 900 RELATED ID: 5DPZ RELATED DB: PDB REMARK 900 RELATED ID: 5DQ1 RELATED DB: PDB REMARK 900 RELATED ID: 5DQ2 RELATED DB: PDB REMARK 900 RELATED ID: 5DQ4 RELATED DB: PDB REMARK 900 RELATED ID: 5DQ5 RELATED DB: PDB REMARK 900 RELATED ID: 5DR0 RELATED DB: PDB REMARK 900 RELATED ID: 5DR4 RELATED DB: PDB REMARK 900 RELATED ID: 5DR1 RELATED DB: PDB REMARK 900 RELATED ID: 5DR7 RELATED DB: PDB REMARK 900 RELATED ID: 5DR8 RELATED DB: PDB REMARK 900 RELATED ID: 5DR3 RELATED DB: PDB DBREF 5DR1 A 1 330 UNP P11838 CARP_CRYPA 90 419 SEQRES 1 A 330 SER THR GLY SER ALA THR THR THR PRO ILE ASP SER LEU SEQRES 2 A 330 ASP ASP ALA TYR ILE THR PRO VAL GLN ILE GLY THR PRO SEQRES 3 A 330 ALA GLN THR LEU ASN LEU ASP PHE ASP THR GLY SER SER SEQRES 4 A 330 ASP LEU TRP VAL PHE SER SER GLU THR THR ALA SER GLU SEQRES 5 A 330 VAL ASP GLY GLN THR ILE TYR THR PRO SER LYS SER THR SEQRES 6 A 330 THR ALA LYS LEU LEU SER GLY ALA THR TRP SER ILE SER SEQRES 7 A 330 TYR GLY ASP GLY SER SER SER SER GLY ASP VAL TYR THR SEQRES 8 A 330 ASP THR VAL SER VAL GLY GLY LEU THR VAL THR GLY GLN SEQRES 9 A 330 ALA VAL GLU SER ALA LYS LYS VAL SER SER SER PHE THR SEQRES 10 A 330 GLU ASP SER THR ILE ASP GLY LEU LEU GLY LEU ALA PHE SEQRES 11 A 330 SER THR LEU ASN THR VAL SER PRO THR GLN GLN LYS THR SEQRES 12 A 330 PHE PHE ASP ASN ALA LYS ALA SER LEU ASP SER PRO VAL SEQRES 13 A 330 PHE THR ALA ASP LEU GLY TYR HIS ALA PRO GLY THR TYR SEQRES 14 A 330 ASN PHE GLY PHE ILE ASP THR THR ALA TYR THR GLY SER SEQRES 15 A 330 ILE THR TYR THR ALA VAL SER THR LYS GLN GLY PHE TRP SEQRES 16 A 330 GLU TRP THR SER THR GLY TYR ALA VAL GLY SER GLY THR SEQRES 17 A 330 PHE LYS SER THR SER ILE ASP GLY ILE ALA ASP THR GLY SEQRES 18 A 330 THR THR LEU LEU TYR LEU PRO ALA THR VAL VAL SER ALA SEQRES 19 A 330 TYR TRP ALA GLN VAL SER GLY ALA LYS SER SER SER SER SEQRES 20 A 330 VAL GLY GLY TYR VAL PHE PRO CYS SER ALA THR LEU PRO SEQRES 21 A 330 SER PHE THR PHE GLY VAL GLY SER ALA ARG ILE VAL ILE SEQRES 22 A 330 PRO GLY ASP TYR ILE ASP PHE GLY PRO ILE SER THR GLY SEQRES 23 A 330 SER SER SER CYS PHE GLY GLY ILE GLN SER SER ALA GLY SEQRES 24 A 330 ILE GLY ILE ASN ILE PHE GLY ASP VAL ALA LEU LYS ALA SEQRES 25 A 330 ALA PHE VAL VAL PHE ASN GLY ALA THR THR PRO THR LEU SEQRES 26 A 330 GLY PHE ALA SER LYS HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET ACT A 404 4 HET EDO A 405 4 HET DMS A 406 4 HET DMS A 407 4 HET DMS A 408 4 HET 5GJ A 409 18 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM 5GJ [(3R)-3-HYDROXYPIPERIDIN-1-YL](1-PHENYLCYCLOPROPYL) HETNAM 2 5GJ METHANONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 EDO C2 H6 O2 FORMUL 7 DMS 3(C2 H6 O S) FORMUL 10 5GJ C15 H19 N O2 FORMUL 11 HOH *236(H2 O) HELIX 1 AA1 THR A 49 VAL A 53 5 5 HELIX 2 AA2 THR A 60 SER A 64 5 5 HELIX 3 AA3 SER A 113 GLU A 118 1 6 HELIX 4 AA4 PHE A 130 ASN A 134 5 5 HELIX 5 AA5 THR A 143 LYS A 149 1 7 HELIX 6 AA6 ALA A 150 LEU A 152 5 3 HELIX 7 AA7 PRO A 228 ALA A 237 1 10 HELIX 8 AA8 PRO A 274 TYR A 277 5 4 HELIX 9 AA9 GLY A 306 LYS A 311 1 6 SHEET 1 AA1 9 LYS A 68 SER A 78 0 SHEET 2 AA1 9 SER A 84 VAL A 96 -1 O VAL A 89 N LEU A 70 SHEET 3 AA1 9 TYR A 17 ILE A 23 -1 N GLN A 22 O SER A 95 SHEET 4 AA1 9 GLY A 3 PRO A 9 -1 N THR A 8 O ILE A 18 SHEET 5 AA1 9 GLY A 167 PHE A 171 -1 O GLY A 167 N THR A 7 SHEET 6 AA1 9 VAL A 156 ASP A 160 -1 N THR A 158 O ASN A 170 SHEET 7 AA1 9 PHE A 314 ASN A 318 -1 O PHE A 317 N PHE A 157 SHEET 8 AA1 9 THR A 324 ALA A 328 -1 O GLY A 326 N VAL A 316 SHEET 9 AA1 9 THR A 184 ALA A 187 -1 N THR A 186 O LEU A 325 SHEET 1 AA213 LYS A 68 SER A 78 0 SHEET 2 AA213 SER A 84 VAL A 96 -1 O VAL A 89 N LEU A 70 SHEET 3 AA213 LEU A 99 VAL A 112 -1 O VAL A 106 N TYR A 90 SHEET 4 AA213 LEU A 41 VAL A 43 1 N LEU A 41 O GLU A 107 SHEET 5 AA213 GLY A 124 GLY A 127 -1 O LEU A 125 N TRP A 42 SHEET 6 AA213 GLN A 28 ASP A 35 1 N ASP A 33 O GLY A 124 SHEET 7 AA213 TYR A 17 ILE A 23 -1 N THR A 19 O LEU A 32 SHEET 8 AA213 GLY A 3 PRO A 9 -1 N THR A 8 O ILE A 18 SHEET 9 AA213 GLY A 167 PHE A 171 -1 O GLY A 167 N THR A 7 SHEET 10 AA213 VAL A 156 ASP A 160 -1 N THR A 158 O ASN A 170 SHEET 11 AA213 PHE A 314 ASN A 318 -1 O PHE A 317 N PHE A 157 SHEET 12 AA213 THR A 324 ALA A 328 -1 O GLY A 326 N VAL A 316 SHEET 13 AA213 THR A 184 ALA A 187 -1 N THR A 186 O LEU A 325 SHEET 1 AA3 7 ALA A 269 ILE A 273 0 SHEET 2 AA3 7 PHE A 262 VAL A 266 -1 N PHE A 262 O ILE A 273 SHEET 3 AA3 7 GLU A 196 VAL A 204 -1 N ALA A 203 O THR A 263 SHEET 4 AA3 7 LYS A 210 ALA A 218 -1 O LYS A 210 N TYR A 202 SHEET 5 AA3 7 ASN A 303 PHE A 305 1 O PHE A 305 N ILE A 217 SHEET 6 AA3 7 LEU A 225 LEU A 227 -1 N TYR A 226 O ILE A 304 SHEET 7 AA3 7 ILE A 294 SER A 296 1 O GLN A 295 N LEU A 225 SHEET 1 AA4 4 LYS A 243 SER A 245 0 SHEET 2 AA4 4 GLY A 250 PRO A 254 -1 O VAL A 252 N LYS A 243 SHEET 3 AA4 4 SER A 289 GLY A 292 -1 O CYS A 290 N PHE A 253 SHEET 4 AA4 4 ASP A 279 PRO A 282 -1 N GLY A 281 O PHE A 291 SSBOND 1 CYS A 255 CYS A 290 1555 1555 2.05 CISPEP 1 THR A 25 PRO A 26 0 -9.22 CISPEP 2 SER A 137 PRO A 138 0 2.97 SITE 1 AC1 8 VAL A 272 PRO A 274 TYR A 277 ALA A 312 SITE 2 AC1 8 SER A 329 LYS A 330 HOH A1340 HOH A1581 SITE 1 AC2 6 SER A 297 ALA A 298 GLY A 301 ILE A 302 SITE 2 AC2 6 HOH A1038 HOH A1071 SITE 1 AC3 7 TYR A 202 ALA A 203 VAL A 204 GLY A 207 SITE 2 AC3 7 THR A 208 LYS A 210 HOH A1894 SITE 1 AC4 4 CYS A 255 ASP A 279 GLY A 281 CYS A 290 SITE 1 AC5 5 ALA A 187 GLU A 196 TRP A 197 THR A 198 SITE 2 AC5 5 ASP A 215 SITE 1 AC6 5 SER A 233 ALA A 237 HOH A1630 HOH A2198 SITE 2 AC6 5 HOH A2450 SITE 1 AC7 5 GLY A 221 THR A 222 THR A 223 5GJ A 409 SITE 2 AC7 5 HOH A 629 SITE 1 AC8 2 PRO A 26 ALA A 27 SITE 1 AC9 9 ILE A 10 ASP A 15 ASP A 33 ASP A 81 SITE 2 AC9 9 SER A 83 SER A 115 PHE A 116 ASP A 119 SITE 3 AC9 9 DMS A 407 CRYST1 45.286 72.977 52.981 90.00 109.55 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022082 0.000000 0.007842 0.00000 SCALE2 0.000000 0.013703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020030 0.00000 MASTER 508 0 9 9 33 0 17 6 0 0 0 26 END