HEADER IMMUNE SYSTEM 31-AUG-15 5DHY TITLE HIV-1 REV NTD DIMERS WITH VARIABLE CROSSING ANGLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, HEAVY COMPND 3 CHAIN; COMPND 4 CHAIN: A, H; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, LIGHT COMPND 8 CHAIN; COMPND 9 CHAIN: B, L; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN REV; COMPND 13 CHAIN: C, M; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 9 ORGANISM_COMMON: RABBIT; SOURCE 10 ORGANISM_TAXID: 9986; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 15 ORGANISM_COMMON: HIV-1; SOURCE 16 ORGANISM_TAXID: 11676; SOURCE 17 GENE: REV; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV, HELICAL HAIRPIN, RNA-BINDING, NUCLEAR EXPORT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.A.DIMATTIA,N.R.WATTS,P.T.WINGFIELD,J.M.GRIMES,D.I.STUART,A.C.STEVEN REVDAT 4 30-AUG-17 5DHY 1 REMARK REVDAT 3 02-AUG-17 5DHY 1 REVDAT 2 20-JUL-16 5DHY 1 JRNL REVDAT 1 22-JUN-16 5DHY 0 JRNL AUTH M.A.DIMATTIA,N.R.WATTS,N.CHENG,R.HUANG,J.B.HEYMANN, JRNL AUTH 2 J.M.GRIMES,P.T.WINGFIELD,D.I.STUART,A.C.STEVEN JRNL TITL THE STRUCTURE OF HIV-1 REV FILAMENTS SUGGESTS A BILATERAL JRNL TITL 2 MODEL FOR REV-RRE ASSEMBLY. JRNL REF STRUCTURE V. 24 1068 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27265851 JRNL DOI 10.1016/J.STR.2016.04.015 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.292 REMARK 3 R VALUE (WORKING SET) : 0.291 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2770 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2666 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2653 REMARK 3 BIN R VALUE (WORKING SET) : 0.2653 REMARK 3 BIN FREE R VALUE : 0.2953 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.22 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 117 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.35960 REMARK 3 B22 (A**2) : -14.35960 REMARK 3 B33 (A**2) : 28.71920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.953 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.654 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.587 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4552 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6192 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1516 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 88 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 670 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4552 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 604 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4865 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|117 } REMARK 3 ORIGIN FOR THE GROUP (A): 48.2590 38.8674 -49.3383 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.2523 REMARK 3 T33: 0.3040 T12: 0.0782 REMARK 3 T13: -0.1511 T23: 0.1282 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 3.5187 REMARK 3 L33: 4.0709 L12: -2.9104 REMARK 3 L13: 0.8819 L23: 0.9229 REMARK 3 S TENSOR REMARK 3 S11: 0.2677 S12: 0.5139 S13: 0.5172 REMARK 3 S21: -0.1976 S22: 0.0088 S23: -0.5442 REMARK 3 S31: -0.5088 S32: -0.5442 S33: -0.2765 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1 - B|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 61.9632 22.8386 -50.1790 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.3040 REMARK 3 T33: 0.3040 T12: 0.1520 REMARK 3 T13: -0.1520 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.5232 L22: 3.3913 REMARK 3 L33: 4.7052 L12: -2.9104 REMARK 3 L13: -2.9104 L23: 0.8417 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.4361 S13: -0.5312 REMARK 3 S21: -0.3362 S22: -0.3443 S23: 0.1900 REMARK 3 S31: 0.4325 S32: 0.5442 S33: 0.2452 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|5 - C|65 } REMARK 3 ORIGIN FOR THE GROUP (A): 44.4860 26.0981 -27.4234 REMARK 3 T TENSOR REMARK 3 T11: -0.1780 T22: -0.3040 REMARK 3 T33: 0.3040 T12: 0.1520 REMARK 3 T13: -0.1520 T23: -0.1028 REMARK 3 L TENSOR REMARK 3 L11: 0.5892 L22: 1.2521 REMARK 3 L33: 6.4699 L12: -2.9104 REMARK 3 L13: 0.8715 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.5442 S13: 0.5442 REMARK 3 S21: 0.5442 S22: -0.4400 S23: -0.3416 REMARK 3 S31: 0.4188 S32: -0.5442 S33: 0.3837 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { H|1 - H|117 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.5172 -1.0069 -40.3726 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.3040 REMARK 3 T33: 0.3040 T12: 0.0800 REMARK 3 T13: -0.0193 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 4.5021 L22: 0.0000 REMARK 3 L33: 2.7787 L12: -2.9104 REMARK 3 L13: 0.1961 L23: 1.2950 REMARK 3 S TENSOR REMARK 3 S11: 0.2420 S12: -0.5442 S13: -0.5442 REMARK 3 S21: -0.2005 S22: 0.0602 S23: -0.0642 REMARK 3 S31: -0.2261 S32: 0.5442 S33: -0.3022 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { L|1 - L|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.8118 -9.3724 -39.9336 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.1727 REMARK 3 T33: 0.3040 T12: 0.1520 REMARK 3 T13: -0.1520 T23: -0.1520 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 3.2806 REMARK 3 L33: 0.0000 L12: 1.2438 REMARK 3 L13: -1.1537 L23: 2.9104 REMARK 3 S TENSOR REMARK 3 S11: 0.2258 S12: -0.4286 S13: -0.2890 REMARK 3 S21: -0.1705 S22: 0.0182 S23: 0.1729 REMARK 3 S31: 0.5442 S32: 0.1674 S33: -0.2439 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { M|5 - M|65 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.8110 6.4988 -62.2611 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.1768 REMARK 3 T33: 0.3040 T12: 0.0339 REMARK 3 T13: -0.0635 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 2.6512 L22: 3.5903 REMARK 3 L33: 5.0773 L12: 2.9104 REMARK 3 L13: 2.9104 L23: -0.3129 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: 0.1510 S13: -0.3549 REMARK 3 S21: -0.5442 S22: -0.5167 S23: -0.3215 REMARK 3 S31: -0.5442 S32: 0.5442 S33: 0.4891 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 - 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11655 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 60.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15100 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF SCFV-REV WERE INITIALLY REMARK 280 GROWN IN 20% PEG 3350, A VARIETY OF SALTS (200 MM SODIUM SULFATE, REMARK 280 SODIUM BROMIDE, OR AMMONIUM PHOSPHATE DIBASIC), AND PH RANGING REMARK 280 FROM 6.5-8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.57000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.57000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.63500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.57000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.57000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.63500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 60.57000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.57000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.63500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 60.57000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 60.57000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.63500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 ARG C 4 REMARK 465 MET M 1 REMARK 465 ALA M 2 REMARK 465 GLY M 3 REMARK 465 ARG M 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -63.22 -94.55 REMARK 500 SER A 55 -160.55 -101.60 REMARK 500 SER A 83 81.37 -154.44 REMARK 500 ASP A 100 8.09 86.82 REMARK 500 SER B 30 -129.89 54.71 REMARK 500 ALA B 51 -38.56 68.82 REMARK 500 ALA B 84 -171.80 -170.36 REMARK 500 ARG B 98 -156.95 63.34 REMARK 500 ASN C 26 70.13 -118.67 REMARK 500 ARG C 35 96.40 58.08 REMARK 500 SER H 30 -64.34 -93.45 REMARK 500 SER H 55 -160.81 -101.48 REMARK 500 SER H 83 81.77 -154.36 REMARK 500 ASP H 100 8.43 87.21 REMARK 500 SER L 30 -129.73 55.34 REMARK 500 ALA L 51 -39.33 69.58 REMARK 500 ALA L 84 -171.75 -170.05 REMARK 500 ARG L 98 -157.07 62.80 REMARK 500 ASN M 26 69.77 -118.00 REMARK 500 ARG M 35 95.84 58.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DHV RELATED DB: PDB REMARK 900 5DHV IS A DIFFERENT CRYSTAL FORM, VARIABLE CROSSING ANGLES OF REV N- REMARK 900 TERMINAL DOMAIN REMARK 900 RELATED ID: 5DHX RELATED DB: PDB REMARK 900 5DHX IS A DIFFERENT CRYSTAL FORM, VARIABLE CROSSING ANGLES OF REV N- REMARK 900 TERMINAL DOMAIN DBREF 5DHY A 1 117 PDB 5DHY 5DHY 1 117 DBREF 5DHY B 1 110 PDB 5DHY 5DHY 1 110 DBREF 5DHY C 1 65 UNP Q76PP8 Q76PP8_9HIV1 1 65 DBREF 5DHY H 1 117 PDB 5DHY 5DHY 1 117 DBREF 5DHY L 1 110 PDB 5DHY 5DHY 1 110 DBREF 5DHY M 1 65 UNP Q76PP8 Q76PP8_9HIV1 1 65 SEQRES 1 A 117 GLN GLU GLN LEU VAL GLU SER GLY GLY ARG LEU VAL THR SEQRES 2 A 117 PRO GLY THR ALA LEU THR LEU THR CYS LYS VAL SER GLY SEQRES 3 A 117 PHE SER LEU SER GLY PHE TRP LEU ASN TRP VAL ARG GLN SEQRES 4 A 117 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ALA ILE TYR SEQRES 5 A 117 ARG GLY SER GLY SER GLU TRP TYR ALA SER TRP ALA LYS SEQRES 6 A 117 GLY ARG PHE THR ILE SER ASP THR SER THR THR VAL THR SEQRES 7 A 117 LEU LYS LEU THR SER PRO THR THR GLU ASP THR ALA THR SEQRES 8 A 117 TYR PHE CYS ALA ALA ASP THR THR ASP ASN GLY TYR PHE SEQRES 9 A 117 THR ILE TRP GLY PRO GLY THR LEU VAL THR VAL SER SER SEQRES 1 B 110 GLU LEU VAL MET THR GLN THR PRO SER SER VAL SER GLU SEQRES 2 B 110 PRO VAL GLY GLY THR VAL THR ILE LYS CYS GLN ALA SER SEQRES 3 B 110 GLN SER ILE SER SER TRP LEU SER TRP TYR GLN GLN LYS SEQRES 4 B 110 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 B 110 ASN LEU ALA SER GLY VAL PRO SER ARG PHE MET GLY SER SEQRES 6 B 110 GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY VAL SEQRES 7 B 110 GLN ARG GLU ASP ALA ALA THR TYR TYR CYS LEU GLY GLY SEQRES 8 B 110 TYR PRO ALA ALA SER TYR ARG THR ALA PHE GLY GLY GLY SEQRES 9 B 110 THR GLU LEU GLU ILE ILE SEQRES 1 C 65 MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP LEU LEU SEQRES 2 C 65 LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SER ASN SEQRES 3 C 65 PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA ARG ARG SEQRES 4 C 65 ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG GLN ILE SEQRES 5 C 65 HIS SER ILE SER GLU ARG ILE LEU SER THR TYR LEU GLY SEQRES 1 H 117 GLN GLU GLN LEU VAL GLU SER GLY GLY ARG LEU VAL THR SEQRES 2 H 117 PRO GLY THR ALA LEU THR LEU THR CYS LYS VAL SER GLY SEQRES 3 H 117 PHE SER LEU SER GLY PHE TRP LEU ASN TRP VAL ARG GLN SEQRES 4 H 117 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ALA ILE TYR SEQRES 5 H 117 ARG GLY SER GLY SER GLU TRP TYR ALA SER TRP ALA LYS SEQRES 6 H 117 GLY ARG PHE THR ILE SER ASP THR SER THR THR VAL THR SEQRES 7 H 117 LEU LYS LEU THR SER PRO THR THR GLU ASP THR ALA THR SEQRES 8 H 117 TYR PHE CYS ALA ALA ASP THR THR ASP ASN GLY TYR PHE SEQRES 9 H 117 THR ILE TRP GLY PRO GLY THR LEU VAL THR VAL SER SER SEQRES 1 L 110 GLU LEU VAL MET THR GLN THR PRO SER SER VAL SER GLU SEQRES 2 L 110 PRO VAL GLY GLY THR VAL THR ILE LYS CYS GLN ALA SER SEQRES 3 L 110 GLN SER ILE SER SER TRP LEU SER TRP TYR GLN GLN LYS SEQRES 4 L 110 PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 110 ASN LEU ALA SER GLY VAL PRO SER ARG PHE MET GLY SER SEQRES 6 L 110 GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY VAL SEQRES 7 L 110 GLN ARG GLU ASP ALA ALA THR TYR TYR CYS LEU GLY GLY SEQRES 8 L 110 TYR PRO ALA ALA SER TYR ARG THR ALA PHE GLY GLY GLY SEQRES 9 L 110 THR GLU LEU GLU ILE ILE SEQRES 1 M 65 MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP LEU LEU SEQRES 2 M 65 LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SER ASN SEQRES 3 M 65 PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA ARG ARG SEQRES 4 M 65 ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG GLN ILE SEQRES 5 M 65 HIS SER ILE SER GLU ARG ILE LEU SER THR TYR LEU GLY HELIX 1 AA1 THR A 85 THR A 89 5 5 HELIX 2 AA2 GLN B 79 ALA B 83 5 5 HELIX 3 AA3 GLY C 6 SER C 25 1 20 HELIX 4 AA4 ARG C 35 GLY C 65 1 31 HELIX 5 AA5 THR H 85 THR H 89 5 5 HELIX 6 AA6 GLN L 79 ALA L 83 5 5 HELIX 7 AA7 GLY M 6 SER M 25 1 20 HELIX 8 AA8 ARG M 35 GLY M 65 1 31 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 THR A 76 LEU A 81 -1 O LEU A 81 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 72 -1 N SER A 71 O THR A 78 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 111 VAL A 115 1 O THR A 114 N VAL A 12 SHEET 3 AA2 6 ALA A 90 ASP A 97 -1 N TYR A 92 O THR A 111 SHEET 4 AA2 6 TRP A 33 GLN A 39 -1 N VAL A 37 O PHE A 93 SHEET 5 AA2 6 LEU A 45 TYR A 52 -1 O GLY A 49 N TRP A 36 SHEET 6 AA2 6 SER A 57 TYR A 60 -1 O TRP A 59 N ALA A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 111 VAL A 115 1 O THR A 114 N VAL A 12 SHEET 3 AA3 4 ALA A 90 ASP A 97 -1 N TYR A 92 O THR A 111 SHEET 4 AA3 4 ILE A 106 TRP A 107 -1 O ILE A 106 N ALA A 96 SHEET 1 AA4 4 MET B 4 THR B 7 0 SHEET 2 AA4 4 VAL B 19 ALA B 25 -1 O LYS B 22 N THR B 7 SHEET 3 AA4 4 GLU B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA4 4 PHE B 62 SER B 67 -1 N MET B 63 O THR B 74 SHEET 1 AA5 6 SER B 10 GLU B 13 0 SHEET 2 AA5 6 THR B 105 ILE B 109 1 O GLU B 108 N VAL B 11 SHEET 3 AA5 6 ALA B 84 GLY B 91 -1 N ALA B 84 O LEU B 107 SHEET 4 AA5 6 LEU B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 AA5 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA5 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA6 4 SER B 10 GLU B 13 0 SHEET 2 AA6 4 THR B 105 ILE B 109 1 O GLU B 108 N VAL B 11 SHEET 3 AA6 4 ALA B 84 GLY B 91 -1 N ALA B 84 O LEU B 107 SHEET 4 AA6 4 THR B 99 PHE B 101 -1 O ALA B 100 N GLY B 90 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA7 4 THR H 76 LEU H 81 -1 O LEU H 81 N LEU H 18 SHEET 4 AA7 4 PHE H 68 ASP H 72 -1 N SER H 71 O THR H 78 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA8 6 ALA H 90 ASP H 97 -1 N TYR H 92 O THR H 111 SHEET 4 AA8 6 TRP H 33 GLN H 39 -1 N VAL H 37 O PHE H 93 SHEET 5 AA8 6 LEU H 45 TYR H 52 -1 O GLY H 49 N TRP H 36 SHEET 6 AA8 6 SER H 57 TYR H 60 -1 O TRP H 59 N ALA H 50 SHEET 1 AA9 4 LEU H 11 VAL H 12 0 SHEET 2 AA9 4 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA9 4 ALA H 90 ASP H 97 -1 N TYR H 92 O THR H 111 SHEET 4 AA9 4 ILE H 106 TRP H 107 -1 O ILE H 106 N ALA H 96 SHEET 1 AB1 4 MET L 4 THR L 7 0 SHEET 2 AB1 4 VAL L 19 ALA L 25 -1 O LYS L 22 N THR L 7 SHEET 3 AB1 4 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB1 4 PHE L 62 SER L 67 -1 N MET L 63 O THR L 74 SHEET 1 AB2 6 SER L 10 GLU L 13 0 SHEET 2 AB2 6 THR L 105 ILE L 109 1 O GLU L 108 N VAL L 11 SHEET 3 AB2 6 ALA L 84 GLY L 91 -1 N ALA L 84 O LEU L 107 SHEET 4 AB2 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB2 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB2 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AB3 4 SER L 10 GLU L 13 0 SHEET 2 AB3 4 THR L 105 ILE L 109 1 O GLU L 108 N VAL L 11 SHEET 3 AB3 4 ALA L 84 GLY L 91 -1 N ALA L 84 O LEU L 107 SHEET 4 AB3 4 THR L 99 PHE L 101 -1 O ALA L 100 N GLY L 90 SSBOND 1 CYS A 22 CYS A 94 1555 1555 2.04 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 94 1555 1555 2.04 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 CISPEP 1 THR B 7 PRO B 8 0 -3.57 CISPEP 2 THR C 34 ARG C 35 0 0.02 CISPEP 3 THR L 7 PRO L 8 0 -4.25 CISPEP 4 THR M 34 ARG M 35 0 -0.10 CRYST1 121.140 121.140 89.270 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011202 0.00000 MASTER 392 0 0 8 56 0 0 6 0 0 0 46 END