HEADER IMMUNE SYSTEM 31-AUG-15 5DHX TITLE HIV-1 REV NTD DIMERS WITH VARIABLE CROSSING ANGLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, LIGHT COMPND 3 CHAIN,ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, HEAVY COMPND 4 CHAIN; COMPND 5 CHAIN: B, L; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN REV; COMPND 9 CHAIN: C, M; COMPND 10 SYNONYM: ART/TRS,ANTI-REPRESSION TRANSACTIVATOR,REGULATOR OF COMPND 11 EXPRESSION OF VIRAL PROTEINS; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_COMMON: HIV-1; SOURCE 10 ORGANISM_TAXID: 11676; SOURCE 11 GENE: REV; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV, HELICAL HAIRPIN, RNA-BINDING, NUCLEAR EXPORT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.A.DIMATTIA,N.R.WATTS,P.T.WINGFIELD,J.M.GRIMES,D.I.STUART,A.C.STEVEN REVDAT 6 30-AUG-17 5DHX 1 REMARK REVDAT 5 02-AUG-17 5DHX 1 REVDAT 4 21-SEP-16 5DHX 1 ATOM REVDAT 3 10-AUG-16 5DHX 1 REVDAT 2 20-JUL-16 5DHX 1 JRNL REVDAT 1 22-JUN-16 5DHX 0 JRNL AUTH M.A.DIMATTIA,N.R.WATTS,N.CHENG,R.HUANG,J.B.HEYMANN, JRNL AUTH 2 J.M.GRIMES,P.T.WINGFIELD,D.I.STUART,A.C.STEVEN JRNL TITL THE STRUCTURE OF HIV-1 REV FILAMENTS SUGGESTS A BILATERAL JRNL TITL 2 MODEL FOR REV-RRE ASSEMBLY. JRNL REF STRUCTURE V. 24 1068 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27265851 JRNL DOI 10.1016/J.STR.2016.04.015 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 750 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2649 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2388 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2503 REMARK 3 BIN R VALUE (WORKING SET) : 0.2345 REMARK 3 BIN FREE R VALUE : 0.3155 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.51 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.91280 REMARK 3 B22 (A**2) : 12.92910 REMARK 3 B33 (A**2) : -5.01630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.507 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.884 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4492 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6126 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1448 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 82 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 665 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4492 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 606 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4873 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.21 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.69 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|1 - B|110 } REMARK 3 ORIGIN FOR THE GROUP (A): -30.9525 -8.4136 10.4561 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: -0.0405 REMARK 3 T33: -0.0566 T12: -0.0058 REMARK 3 T13: 0.0671 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 1.1221 REMARK 3 L33: 5.8928 L12: 0.0702 REMARK 3 L13: -0.8394 L23: -0.5631 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: 0.0305 S13: 0.0168 REMARK 3 S21: -0.0868 S22: 0.0143 S23: -0.0352 REMARK 3 S31: -0.0342 S32: -0.1210 S33: 0.0935 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|111 - B|231 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.4416 7.0651 3.9945 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: -0.1231 REMARK 3 T33: -0.0876 T12: -0.1520 REMARK 3 T13: 0.1520 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.0314 L22: 4.3536 REMARK 3 L33: 1.6480 L12: 1.2402 REMARK 3 L13: 0.3320 L23: 1.5549 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.1130 S13: 0.1644 REMARK 3 S21: -0.1841 S22: 0.0275 S23: -0.3595 REMARK 3 S31: -0.5442 S32: 0.4296 S33: -0.0591 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|5 - C|65 } REMARK 3 ORIGIN FOR THE GROUP (A): -34.3051 -6.5325 -14.6749 REMARK 3 T TENSOR REMARK 3 T11: 0.2042 T22: -0.0638 REMARK 3 T33: -0.1657 T12: -0.1520 REMARK 3 T13: 0.0365 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 4.0468 L22: 3.7785 REMARK 3 L33: 3.3141 L12: -1.6164 REMARK 3 L13: 2.8093 L23: -0.7009 REMARK 3 S TENSOR REMARK 3 S11: -0.2545 S12: -0.2267 S13: 0.1138 REMARK 3 S21: -0.5442 S22: 0.2177 S23: 0.1084 REMARK 3 S31: 0.3416 S32: -0.3442 S33: 0.0368 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { L|1 - L|110 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.0980 -10.7840 37.9904 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: -0.1111 REMARK 3 T33: 0.0041 T12: -0.0111 REMARK 3 T13: 0.0300 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.2870 L22: 4.7872 REMARK 3 L33: 1.0634 L12: 0.0503 REMARK 3 L13: -0.4266 L23: 1.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.0191 S13: 0.0377 REMARK 3 S21: 0.0355 S22: -0.0578 S23: 0.1077 REMARK 3 S31: -0.0499 S32: 0.0065 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { L|111 - L|227 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.5414 -25.1997 46.8093 REMARK 3 T TENSOR REMARK 3 T11: 0.0113 T22: -0.1749 REMARK 3 T33: 0.1407 T12: -0.0580 REMARK 3 T13: 0.1228 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.9515 L22: 4.2175 REMARK 3 L33: 1.3695 L12: -0.4459 REMARK 3 L13: -0.5883 L23: -0.0738 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.1473 S13: 0.0138 REMARK 3 S21: 0.4538 S22: -0.0740 S23: 0.5442 REMARK 3 S31: -0.0089 S32: 0.0011 S33: 0.0745 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { M|5 - M|65 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.7535 -31.3629 25.3436 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: -0.0774 REMARK 3 T33: -0.0980 T12: 0.0089 REMARK 3 T13: 0.0618 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 4.6071 L22: 4.7766 REMARK 3 L33: 3.1518 L12: -2.9104 REMARK 3 L13: 1.4849 L23: -1.8913 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: 0.0299 S13: -0.1105 REMARK 3 S21: -0.5408 S22: -0.1404 S23: -0.1677 REMARK 3 S31: 0.2174 S32: 0.3215 S33: 0.0421 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF SCFV-REV WERE INITIALLY REMARK 280 GROWN IN 20% PEG 3350, A VARIETY OF SALTS (200 MM SODIUM SULFATE, REMARK 280 SODIUM BROMIDE, OR AMMONIUM PHOSPHATE DIBASIC), AND PH RANGING REMARK 280 FROM 6.5-8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.26400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.33450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.55050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.33450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.26400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.55050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 0 REMARK 465 GLY B 110A REMARK 465 GLY B 110B REMARK 465 SER B 110C REMARK 465 SER B 110D REMARK 465 ARG B 110E REMARK 465 SER B 110F REMARK 465 SER B 110G REMARK 465 SER B 110H REMARK 465 SER B 110I REMARK 465 GLY B 110J REMARK 465 GLY B 110K REMARK 465 GLY B 110L REMARK 465 GLY B 110M REMARK 465 SER B 110N REMARK 465 GLY B 110O REMARK 465 GLY B 110P REMARK 465 GLY B 110Q REMARK 465 GLY B 110R REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 ARG C 4 REMARK 465 ALA L 0 REMARK 465 GLY L 110A REMARK 465 GLY L 110B REMARK 465 SER L 110C REMARK 465 SER L 110D REMARK 465 ARG L 110E REMARK 465 SER L 110F REMARK 465 SER L 110G REMARK 465 SER L 110H REMARK 465 SER L 110I REMARK 465 GLY L 110J REMARK 465 GLY L 110K REMARK 465 GLY L 110L REMARK 465 GLY L 110M REMARK 465 SER L 110N REMARK 465 GLY L 110O REMARK 465 GLY L 110P REMARK 465 GLY L 110Q REMARK 465 GLY L 110R REMARK 465 HIS L 228 REMARK 465 HIS L 229 REMARK 465 HIS L 230 REMARK 465 HIS L 231 REMARK 465 HIS L 232 REMARK 465 HIS L 233 REMARK 465 MET M 1 REMARK 465 ALA M 2 REMARK 465 GLY M 3 REMARK 465 ARG M 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 229 CG ND1 CD2 CE1 NE2 REMARK 470 ASN C 30 CG OD1 ND2 REMARK 470 GLU C 32 CG CD OE1 OE2 REMARK 470 THR C 34 OG1 CG2 REMARK 470 ARG C 35 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 36 CG CD OE1 NE2 REMARK 470 ARG C 38 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 41 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 ASN M 30 CG OD1 ND2 REMARK 470 GLU M 32 CG CD OE1 OE2 REMARK 470 THR M 34 OG1 CG2 REMARK 470 ARG M 35 CG CD NE CZ NH1 NH2 REMARK 470 GLN M 36 CG CD OE1 NE2 REMARK 470 ARG M 38 CG CD NE CZ NH1 NH2 REMARK 470 ARG M 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG M 41 CG CD NE CZ NH1 NH2 REMARK 470 ARG M 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG M 43 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 30 -122.72 64.29 REMARK 500 ALA B 51 -44.10 75.20 REMARK 500 SER B 76 -70.99 -73.17 REMARK 500 ARG B 98 -166.72 64.72 REMARK 500 SER B 138 -7.78 -54.89 REMARK 500 ARG B 163 -25.31 -38.08 REMARK 500 SER B 165 -147.84 -72.75 REMARK 500 SER B 184 -73.03 -56.93 REMARK 500 ASP B 210 11.29 80.32 REMARK 500 THR C 34 82.48 44.58 REMARK 500 ARG C 35 -15.33 56.03 REMARK 500 SER L 30 -122.07 64.59 REMARK 500 TRP L 32 55.61 -69.81 REMARK 500 ALA L 51 -47.63 72.21 REMARK 500 SER L 76 -70.87 -73.65 REMARK 500 ARG L 98 -167.03 64.01 REMARK 500 SER L 138 -9.84 -52.53 REMARK 500 SER L 140 -82.01 -81.80 REMARK 500 SER L 165 -149.11 -79.47 REMARK 500 ASP L 210 10.42 80.66 REMARK 500 THR M 34 80.15 46.52 REMARK 500 ARG M 35 -14.89 55.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DHV RELATED DB: PDB REMARK 900 5DHV IS A DIFFERENT CRYSTAL FORM, VARIABLE CROSSING ANGLES OF REV N- REMARK 900 TERMINAL DOMAIN DBREF 5DHX B 0 110 PDB 5DHX 5DHX 0 110 DBREF 5DHX B 111 227 PDB 5DHX 5DHX 111 227 DBREF 5DHX C 1 65 UNP P69718 REV_HV1H3 1 65 DBREF 5DHX L 0 110 PDB 5DHX 5DHX 0 110 DBREF 5DHX L 111 227 PDB 5DHX 5DHX 111 227 DBREF 5DHX M 1 65 UNP P69718 REV_HV1H3 1 65 SEQRES 1 B 252 ALA GLU LEU VAL MET THR GLN THR PRO SER SER VAL SER SEQRES 2 B 252 GLU PRO VAL GLY GLY THR VAL THR ILE LYS CYS GLN ALA SEQRES 3 B 252 SER GLN SER ILE SER SER TRP LEU SER TRP TYR GLN GLN SEQRES 4 B 252 LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR ASP ALA SEQRES 5 B 252 SER ASN LEU ALA SER GLY VAL PRO SER ARG PHE MET GLY SEQRES 6 B 252 SER GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY SEQRES 7 B 252 VAL GLN ARG GLU ASP ALA ALA THR TYR TYR CYS LEU GLY SEQRES 8 B 252 GLY TYR PRO ALA ALA SER TYR ARG THR ALA PHE GLY GLY SEQRES 9 B 252 GLY THR GLU LEU GLU ILE ILE GLY GLY SER SER ARG SER SEQRES 10 B 252 SER SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY GLN SEQRES 11 B 252 GLU GLN LEU VAL GLU SER GLY GLY ARG LEU VAL THR PRO SEQRES 12 B 252 GLY THR ALA LEU THR LEU THR CYS LYS VAL SER GLY PHE SEQRES 13 B 252 SER LEU SER GLY PHE TRP LEU ASN TRP VAL ARG GLN ALA SEQRES 14 B 252 PRO GLY LYS GLY LEU GLU TRP VAL GLY ALA ILE TYR ARG SEQRES 15 B 252 GLY SER GLY SER GLU TRP TYR ALA SER TRP ALA LYS GLY SEQRES 16 B 252 ARG PHE THR ILE SER ASP THR SER THR THR VAL THR LEU SEQRES 17 B 252 LYS LEU THR SER PRO THR THR GLU ASP THR ALA THR TYR SEQRES 18 B 252 PHE CYS ALA ALA ASP THR THR ASP ASN GLY TYR PHE THR SEQRES 19 B 252 ILE TRP GLY PRO GLY THR LEU VAL THR VAL SER SER HIS SEQRES 20 B 252 HIS HIS HIS HIS HIS SEQRES 1 C 65 MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP LEU LEU SEQRES 2 C 65 LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SER ASN SEQRES 3 C 65 PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA ARG ARG SEQRES 4 C 65 ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG GLN ILE SEQRES 5 C 65 HIS SER ILE SER GLU ARG ILE LEU SER THR TYR LEU GLY SEQRES 1 L 252 ALA GLU LEU VAL MET THR GLN THR PRO SER SER VAL SER SEQRES 2 L 252 GLU PRO VAL GLY GLY THR VAL THR ILE LYS CYS GLN ALA SEQRES 3 L 252 SER GLN SER ILE SER SER TRP LEU SER TRP TYR GLN GLN SEQRES 4 L 252 LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE TYR ASP ALA SEQRES 5 L 252 SER ASN LEU ALA SER GLY VAL PRO SER ARG PHE MET GLY SEQRES 6 L 252 SER GLY SER GLY THR GLU TYR THR LEU THR ILE SER GLY SEQRES 7 L 252 VAL GLN ARG GLU ASP ALA ALA THR TYR TYR CYS LEU GLY SEQRES 8 L 252 GLY TYR PRO ALA ALA SER TYR ARG THR ALA PHE GLY GLY SEQRES 9 L 252 GLY THR GLU LEU GLU ILE ILE GLY GLY SER SER ARG SER SEQRES 10 L 252 SER SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY GLN SEQRES 11 L 252 GLU GLN LEU VAL GLU SER GLY GLY ARG LEU VAL THR PRO SEQRES 12 L 252 GLY THR ALA LEU THR LEU THR CYS LYS VAL SER GLY PHE SEQRES 13 L 252 SER LEU SER GLY PHE TRP LEU ASN TRP VAL ARG GLN ALA SEQRES 14 L 252 PRO GLY LYS GLY LEU GLU TRP VAL GLY ALA ILE TYR ARG SEQRES 15 L 252 GLY SER GLY SER GLU TRP TYR ALA SER TRP ALA LYS GLY SEQRES 16 L 252 ARG PHE THR ILE SER ASP THR SER THR THR VAL THR LEU SEQRES 17 L 252 LYS LEU THR SER PRO THR THR GLU ASP THR ALA THR TYR SEQRES 18 L 252 PHE CYS ALA ALA ASP THR THR ASP ASN GLY TYR PHE THR SEQRES 19 L 252 ILE TRP GLY PRO GLY THR LEU VAL THR VAL SER SER HIS SEQRES 20 L 252 HIS HIS HIS HIS HIS SEQRES 1 M 65 MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP LEU LEU SEQRES 2 M 65 LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SER ASN SEQRES 3 M 65 PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA ARG ARG SEQRES 4 M 65 ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG GLN ILE SEQRES 5 M 65 HIS SER ILE SER GLU ARG ILE LEU SER THR TYR LEU GLY HELIX 1 AA1 GLN B 79 ALA B 83 5 5 HELIX 2 AA2 THR B 195 THR B 199 5 5 HELIX 3 AA3 GLY C 6 SER C 25 1 20 HELIX 4 AA4 GLN C 36 THR C 62 1 27 HELIX 5 AA5 GLN L 79 ALA L 83 5 5 HELIX 6 AA6 THR L 195 THR L 199 5 5 HELIX 7 AA7 GLY M 6 SER M 25 1 20 HELIX 8 AA8 GLN M 36 THR M 62 1 27 SHEET 1 AA1 4 MET B 4 THR B 7 0 SHEET 2 AA1 4 VAL B 19 ALA B 25 -1 O GLN B 24 N THR B 5 SHEET 3 AA1 4 GLU B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA1 4 PHE B 62 SER B 67 -1 N MET B 63 O THR B 74 SHEET 1 AA2 6 SER B 10 GLU B 13 0 SHEET 2 AA2 6 THR B 105 ILE B 109 1 O GLU B 106 N VAL B 11 SHEET 3 AA2 6 THR B 85 GLY B 91 -1 N TYR B 86 O THR B 105 SHEET 4 AA2 6 LEU B 33 GLN B 38 -1 N SER B 34 O LEU B 89 SHEET 5 AA2 6 LYS B 45 TYR B 49 -1 O LYS B 45 N GLN B 37 SHEET 6 AA2 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA3 4 SER B 10 GLU B 13 0 SHEET 2 AA3 4 THR B 105 ILE B 109 1 O GLU B 106 N VAL B 11 SHEET 3 AA3 4 THR B 85 GLY B 91 -1 N TYR B 86 O THR B 105 SHEET 4 AA3 4 THR B 99 PHE B 101 -1 O ALA B 100 N GLY B 90 SHEET 1 AA4 4 GLN B 113 SER B 117 0 SHEET 2 AA4 4 LEU B 128 SER B 135 -1 O LYS B 133 N VAL B 115 SHEET 3 AA4 4 THR B 186 LEU B 191 -1 O VAL B 187 N CYS B 132 SHEET 4 AA4 4 PHE B 178 ASP B 182 -1 N THR B 179 O LYS B 190 SHEET 1 AA5 6 LEU B 121 VAL B 122 0 SHEET 2 AA5 6 THR B 221 VAL B 225 1 O THR B 224 N VAL B 122 SHEET 3 AA5 6 ALA B 200 ASP B 207 -1 N TYR B 202 O THR B 221 SHEET 4 AA5 6 TRP B 143 GLN B 149 -1 N VAL B 147 O PHE B 203 SHEET 5 AA5 6 LEU B 155 TYR B 162 -1 O GLY B 159 N TRP B 146 SHEET 6 AA5 6 SER B 167 TYR B 170 -1 O TRP B 169 N ALA B 160 SHEET 1 AA6 4 LEU B 121 VAL B 122 0 SHEET 2 AA6 4 THR B 221 VAL B 225 1 O THR B 224 N VAL B 122 SHEET 3 AA6 4 ALA B 200 ASP B 207 -1 N TYR B 202 O THR B 221 SHEET 4 AA6 4 ILE B 216 TRP B 217 -1 O ILE B 216 N ALA B 206 SHEET 1 AA7 4 MET L 4 THR L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O GLN L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AA8 6 SER L 10 GLU L 13 0 SHEET 2 AA8 6 THR L 105 ILE L 109 1 O GLU L 106 N VAL L 11 SHEET 3 AA8 6 THR L 85 GLY L 91 -1 N TYR L 86 O THR L 105 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N SER L 34 O LEU L 89 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA8 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 GLU L 13 0 SHEET 2 AA9 4 THR L 105 ILE L 109 1 O GLU L 106 N VAL L 11 SHEET 3 AA9 4 THR L 85 GLY L 91 -1 N TYR L 86 O THR L 105 SHEET 4 AA9 4 THR L 99 PHE L 101 -1 O ALA L 100 N GLY L 90 SHEET 1 AB1 4 GLN L 113 SER L 117 0 SHEET 2 AB1 4 LEU L 128 SER L 135 -1 O THR L 131 N SER L 117 SHEET 3 AB1 4 THR L 186 LEU L 191 -1 O LEU L 191 N LEU L 128 SHEET 4 AB1 4 PHE L 178 ASP L 182 -1 N THR L 179 O LYS L 190 SHEET 1 AB2 6 LEU L 121 VAL L 122 0 SHEET 2 AB2 6 THR L 221 VAL L 225 1 O THR L 224 N VAL L 122 SHEET 3 AB2 6 ALA L 200 ASP L 207 -1 N TYR L 202 O THR L 221 SHEET 4 AB2 6 TRP L 143 GLN L 149 -1 N VAL L 147 O PHE L 203 SHEET 5 AB2 6 LEU L 155 TYR L 162 -1 O VAL L 158 N TRP L 146 SHEET 6 AB2 6 SER L 167 TYR L 170 -1 O TRP L 169 N ALA L 160 SHEET 1 AB3 4 LEU L 121 VAL L 122 0 SHEET 2 AB3 4 THR L 221 VAL L 225 1 O THR L 224 N VAL L 122 SHEET 3 AB3 4 ALA L 200 ASP L 207 -1 N TYR L 202 O THR L 221 SHEET 4 AB3 4 ILE L 216 TRP L 217 -1 O ILE L 216 N ALA L 206 SSBOND 1 CYS B 23 CYS B 88 1555 1555 2.04 SSBOND 2 CYS B 132 CYS B 204 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 132 CYS L 204 1555 1555 2.05 CISPEP 1 THR B 7 PRO B 8 0 -3.09 CISPEP 2 THR L 7 PRO L 8 0 -2.59 CRYST1 44.528 87.101 166.669 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006000 0.00000 MASTER 458 0 0 8 56 0 0 6 0 0 0 50 END