HEADER HYDROLASE 14-AUG-15 5D7O TITLE CRYSTAL STRUCTURE OF SIRT2-ADPR AT AN IMPROVED RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-336; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 2,SIR2-LIKE PROTEIN 2; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: GLY1 ORIGINATES FROM TEV CLEAVAGE SITE HIS2/MET3 COMPND 9 ORIGINATE FROM NDEI RESTRICTION SITE OF THE VECTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HUMAN SIRT2, DEACYLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.RUMPF,S.GERHARDT,O.EINSLE,M.JUNG REVDAT 2 09-DEC-15 5D7O 1 JRNL REVDAT 1 02-DEC-15 5D7O 0 JRNL AUTH T.RUMPF,S.GERHARDT,O.EINSLE,M.JUNG JRNL TITL SEEDING FOR SIRTUINS: MICROSEED MATRIX SEEDING TO OBTAIN JRNL TITL 2 CRYSTALS OF HUMAN SIRT3 AND SIRT2 SUITABLE FOR SOAKING. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 1498 2015 JRNL REFN ESSN 2053-230X JRNL PMID 26625292 JRNL DOI 10.1107/S2053230X15019986 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 83210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5658 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 291 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : 2.73000 REMARK 3 B33 (A**2) : -3.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.017 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.017 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.972 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5018 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4762 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6791 ; 1.149 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11033 ; 0.741 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 5.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;33.016 ;23.733 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 890 ;13.542 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;11.922 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5510 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1114 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2414 ; 0.817 ; 2.406 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2413 ; 0.817 ; 2.405 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3018 ; 1.449 ; 3.602 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3019 ; 1.449 ; 3.603 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2604 ; 0.722 ; 2.529 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2604 ; 0.722 ; 2.529 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3766 ; 1.237 ; 3.737 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5724 ; 3.057 ;19.317 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5725 ; 3.057 ;19.323 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.574 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6266 -11.2686 -4.5614 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.0316 REMARK 3 T33: 0.0218 T12: -0.0005 REMARK 3 T13: 0.0017 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0983 L22: 0.2756 REMARK 3 L33: 0.2482 L12: 0.1057 REMARK 3 L13: -0.0562 L23: 0.1229 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0220 S13: 0.0197 REMARK 3 S21: -0.0170 S22: 0.0273 S23: 0.0201 REMARK 3 S31: -0.0181 S32: 0.0014 S33: -0.0244 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 400 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6806 -13.4291 31.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.0120 REMARK 3 T33: 0.0184 T12: 0.0138 REMARK 3 T13: 0.0225 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2395 L22: 0.1684 REMARK 3 L33: 0.4037 L12: 0.1207 REMARK 3 L13: -0.2793 L23: -0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: 0.0065 S13: 0.0277 REMARK 3 S21: 0.0684 S22: -0.0049 S23: 0.0531 REMARK 3 S31: -0.0540 S32: 0.0171 S33: -0.0542 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000211681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.25 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 49.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.98300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3ZGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 30 % (W/V) PEG REMARK 280 3350, 0.1 M BIS-TRIS, PH 6.25, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.12050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.12050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 HIS A 48 REMARK 465 MET A 49 REMARK 465 SER A 50 REMARK 465 LEU A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 GLN A 54 REMARK 465 LYS A 55 REMARK 465 GLU A 56 REMARK 465 SER A 356 REMARK 465 GLY B 47 REMARK 465 HIS B 48 REMARK 465 MET B 49 REMARK 465 SER B 50 REMARK 465 LEU B 51 REMARK 465 GLY B 52 REMARK 465 SER B 53 REMARK 465 GLN B 54 REMARK 465 SER B 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 95 -168.61 -76.87 REMARK 500 SER A 100 -51.82 73.09 REMARK 500 GLN A 142 12.42 -140.87 REMARK 500 CYS A 200 -63.92 -105.55 REMARK 500 ASP A 231 34.28 -77.12 REMARK 500 TYR A 315 -16.12 -142.14 REMARK 500 ARG A 316 -5.52 -145.68 REMARK 500 SER B 100 -46.10 69.99 REMARK 500 CYS B 200 -61.21 -122.02 REMARK 500 GLN B 225 11.87 59.29 REMARK 500 ASP B 231 36.61 -76.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 113.4 REMARK 620 3 CYS A 221 SG 107.9 110.5 REMARK 620 4 CYS A 224 SG 93.8 117.0 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 195 SG REMARK 620 2 CYS B 200 SG 117.1 REMARK 620 3 CYS B 221 SG 108.4 110.7 REMARK 620 4 CYS B 224 SG 93.5 113.8 112.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 403 DBREF 5D7O A 50 356 UNP Q8IXJ6 SIR2_HUMAN 50 356 DBREF 5D7O B 50 356 UNP Q8IXJ6 SIR2_HUMAN 50 356 SEQADV 5D7O GLY A 47 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7O HIS A 48 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7O MET A 49 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7O GLY B 47 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7O HIS B 48 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5D7O MET B 49 UNP Q8IXJ6 EXPRESSION TAG SEQRES 1 A 310 GLY HIS MET SER LEU GLY SER GLN LYS GLU ARG LEU LEU SEQRES 2 A 310 ASP GLU LEU THR LEU GLU GLY VAL ALA ARG TYR MET GLN SEQRES 3 A 310 SER GLU ARG CYS ARG ARG VAL ILE CYS LEU VAL GLY ALA SEQRES 4 A 310 GLY ILE SER THR SER ALA GLY ILE PRO ASP PHE ARG SER SEQRES 5 A 310 PRO SER THR GLY LEU TYR ASP ASN LEU GLU LYS TYR HIS SEQRES 6 A 310 LEU PRO TYR PRO GLU ALA ILE PHE GLU ILE SER TYR PHE SEQRES 7 A 310 LYS LYS HIS PRO GLU PRO PHE PHE ALA LEU ALA LYS GLU SEQRES 8 A 310 LEU TYR PRO GLY GLN PHE LYS PRO THR ILE CYS HIS TYR SEQRES 9 A 310 PHE MET ARG LEU LEU LYS ASP LYS GLY LEU LEU LEU ARG SEQRES 10 A 310 CYS TYR THR GLN ASN ILE ASP THR LEU GLU ARG ILE ALA SEQRES 11 A 310 GLY LEU GLU GLN GLU ASP LEU VAL GLU ALA HIS GLY THR SEQRES 12 A 310 PHE TYR THR SER HIS CYS VAL SER ALA SER CYS ARG HIS SEQRES 13 A 310 GLU TYR PRO LEU SER TRP MET LYS GLU LYS ILE PHE SER SEQRES 14 A 310 GLU VAL THR PRO LYS CYS GLU ASP CYS GLN SER LEU VAL SEQRES 15 A 310 LYS PRO ASP ILE VAL PHE PHE GLY GLU SER LEU PRO ALA SEQRES 16 A 310 ARG PHE PHE SER CYS MET GLN SER ASP PHE LEU LYS VAL SEQRES 17 A 310 ASP LEU LEU LEU VAL MET GLY THR SER LEU GLN VAL GLN SEQRES 18 A 310 PRO PHE ALA SER LEU ILE SER LYS ALA PRO LEU SER THR SEQRES 19 A 310 PRO ARG LEU LEU ILE ASN LYS GLU LYS ALA GLY GLN SER SEQRES 20 A 310 ASP PRO PHE LEU GLY MET ILE MET GLY LEU GLY GLY GLY SEQRES 21 A 310 MET ASP PHE ASP SER LYS LYS ALA TYR ARG ASP VAL ALA SEQRES 22 A 310 TRP LEU GLY GLU CYS ASP GLN GLY CYS LEU ALA LEU ALA SEQRES 23 A 310 GLU LEU LEU GLY TRP LYS LYS GLU LEU GLU ASP LEU VAL SEQRES 24 A 310 ARG ARG GLU HIS ALA SER ILE ASP ALA GLN SER SEQRES 1 B 310 GLY HIS MET SER LEU GLY SER GLN LYS GLU ARG LEU LEU SEQRES 2 B 310 ASP GLU LEU THR LEU GLU GLY VAL ALA ARG TYR MET GLN SEQRES 3 B 310 SER GLU ARG CYS ARG ARG VAL ILE CYS LEU VAL GLY ALA SEQRES 4 B 310 GLY ILE SER THR SER ALA GLY ILE PRO ASP PHE ARG SER SEQRES 5 B 310 PRO SER THR GLY LEU TYR ASP ASN LEU GLU LYS TYR HIS SEQRES 6 B 310 LEU PRO TYR PRO GLU ALA ILE PHE GLU ILE SER TYR PHE SEQRES 7 B 310 LYS LYS HIS PRO GLU PRO PHE PHE ALA LEU ALA LYS GLU SEQRES 8 B 310 LEU TYR PRO GLY GLN PHE LYS PRO THR ILE CYS HIS TYR SEQRES 9 B 310 PHE MET ARG LEU LEU LYS ASP LYS GLY LEU LEU LEU ARG SEQRES 10 B 310 CYS TYR THR GLN ASN ILE ASP THR LEU GLU ARG ILE ALA SEQRES 11 B 310 GLY LEU GLU GLN GLU ASP LEU VAL GLU ALA HIS GLY THR SEQRES 12 B 310 PHE TYR THR SER HIS CYS VAL SER ALA SER CYS ARG HIS SEQRES 13 B 310 GLU TYR PRO LEU SER TRP MET LYS GLU LYS ILE PHE SER SEQRES 14 B 310 GLU VAL THR PRO LYS CYS GLU ASP CYS GLN SER LEU VAL SEQRES 15 B 310 LYS PRO ASP ILE VAL PHE PHE GLY GLU SER LEU PRO ALA SEQRES 16 B 310 ARG PHE PHE SER CYS MET GLN SER ASP PHE LEU LYS VAL SEQRES 17 B 310 ASP LEU LEU LEU VAL MET GLY THR SER LEU GLN VAL GLN SEQRES 18 B 310 PRO PHE ALA SER LEU ILE SER LYS ALA PRO LEU SER THR SEQRES 19 B 310 PRO ARG LEU LEU ILE ASN LYS GLU LYS ALA GLY GLN SER SEQRES 20 B 310 ASP PRO PHE LEU GLY MET ILE MET GLY LEU GLY GLY GLY SEQRES 21 B 310 MET ASP PHE ASP SER LYS LYS ALA TYR ARG ASP VAL ALA SEQRES 22 B 310 TRP LEU GLY GLU CYS ASP GLN GLY CYS LEU ALA LEU ALA SEQRES 23 B 310 GLU LEU LEU GLY TRP LYS LYS GLU LEU GLU ASP LEU VAL SEQRES 24 B 310 ARG ARG GLU HIS ALA SER ILE ASP ALA GLN SER HET ZN A 401 1 HET AR6 A 402 36 HET ZN B 401 1 HET AR6 B 402 36 HET PGE B 403 10 HETNAM ZN ZINC ION HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 AR6 2(C15 H23 N5 O14 P2) FORMUL 7 PGE C6 H14 O4 FORMUL 8 HOH *213(H2 O) HELIX 1 AA1 THR A 63 SER A 73 1 11 HELIX 2 AA2 ALA A 85 GLY A 92 5 8 HELIX 3 AA3 GLY A 102 ASN A 106 5 5 HELIX 4 AA4 LEU A 107 HIS A 111 5 5 HELIX 5 AA5 TYR A 114 PHE A 119 5 6 HELIX 6 AA6 GLU A 120 HIS A 127 1 8 HELIX 7 AA7 PRO A 128 TYR A 139 1 12 HELIX 8 AA8 THR A 146 LYS A 158 1 13 HELIX 9 AA9 THR A 171 ALA A 176 1 6 HELIX 10 AB1 GLU A 179 GLU A 181 5 3 HELIX 11 AB2 LEU A 206 PHE A 214 1 9 HELIX 12 AB3 PRO A 240 PHE A 251 1 12 HELIX 13 AB4 PRO A 268 ALA A 270 5 3 HELIX 14 AB5 SER A 271 ALA A 276 1 6 HELIX 15 AB6 GLU A 323 LEU A 335 1 13 HELIX 16 AB7 TRP A 337 GLN A 355 1 19 HELIX 17 AB8 THR B 63 SER B 73 1 11 HELIX 18 AB9 ALA B 85 GLY B 92 5 8 HELIX 19 AC1 GLY B 102 ASN B 106 5 5 HELIX 20 AC2 LEU B 107 HIS B 111 5 5 HELIX 21 AC3 TYR B 114 PHE B 119 5 6 HELIX 22 AC4 GLU B 120 HIS B 127 1 8 HELIX 23 AC5 PRO B 128 TYR B 139 1 12 HELIX 24 AC6 THR B 146 LYS B 158 1 13 HELIX 25 AC7 THR B 171 ALA B 176 1 6 HELIX 26 AC8 GLU B 179 GLU B 181 5 3 HELIX 27 AC9 PRO B 205 SER B 215 1 11 HELIX 28 AD1 PRO B 240 PHE B 251 1 12 HELIX 29 AD2 PRO B 268 ALA B 276 5 9 HELIX 30 AD3 GLU B 323 LEU B 335 1 13 HELIX 31 AD4 TRP B 337 ALA B 354 1 18 SHEET 1 AA1 6 LEU A 183 GLU A 185 0 SHEET 2 AA1 6 LEU A 161 THR A 166 1 N THR A 166 O VAL A 184 SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 AA1 6 LEU A 256 MET A 260 1 O MET A 260 N LEU A 82 SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O TRP A 320 N LEU A 284 SHEET 1 AA2 3 GLU A 203 PRO A 205 0 SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192 SHEET 1 AA3 6 LEU B 183 GLU B 185 0 SHEET 2 AA3 6 LEU B 161 THR B 166 1 N THR B 166 O VAL B 184 SHEET 3 AA3 6 VAL B 79 VAL B 83 1 N VAL B 79 O LEU B 162 SHEET 4 AA3 6 LEU B 256 MET B 260 1 O LEU B 258 N ILE B 80 SHEET 5 AA3 6 ARG B 282 ASN B 286 1 O ILE B 285 N VAL B 259 SHEET 6 AA3 6 ASP B 317 LEU B 321 1 O VAL B 318 N LEU B 284 SHEET 1 AA4 3 GLU B 203 TYR B 204 0 SHEET 2 AA4 3 GLY B 188 CYS B 195 -1 N SER B 193 O TYR B 204 SHEET 3 AA4 3 VAL B 228 ILE B 232 -1 O ASP B 231 N THR B 192 LINK SG CYS A 195 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 200 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.34 LINK SG CYS B 195 ZN ZN B 401 1555 1555 2.34 LINK SG CYS B 200 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 221 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 224 ZN ZN B 401 1555 1555 2.34 CISPEP 1 GLN A 267 PRO A 268 0 0.71 CISPEP 2 GLN B 267 PRO B 268 0 2.03 SITE 1 AC1 4 CYS A 195 CYS A 200 CYS A 221 CYS A 224 SITE 1 AC2 26 GLY A 84 ALA A 85 GLY A 86 THR A 89 SITE 2 AC2 26 ASP A 95 PHE A 96 ARG A 97 TYR A 104 SITE 3 AC2 26 GLN A 167 HIS A 187 PHE A 235 GLY A 261 SITE 4 AC2 26 THR A 262 SER A 263 VAL A 266 ASN A 286 SITE 5 AC2 26 LYS A 287 GLU A 288 GLY A 322 GLU A 323 SITE 6 AC2 26 CYS A 324 HOH A 502 HOH A 505 HOH A 516 SITE 7 AC2 26 HOH A 539 HOH A 563 SITE 1 AC3 4 CYS B 195 CYS B 200 CYS B 221 CYS B 224 SITE 1 AC4 27 GLY B 84 ALA B 85 GLY B 86 THR B 89 SITE 2 AC4 27 ASP B 95 PHE B 96 ARG B 97 TYR B 104 SITE 3 AC4 27 GLN B 167 HIS B 187 PHE B 235 GLY B 261 SITE 4 AC4 27 THR B 262 SER B 263 VAL B 266 ASN B 286 SITE 5 AC4 27 LYS B 287 GLU B 288 GLY B 322 GLU B 323 SITE 6 AC4 27 CYS B 324 HOH B 504 HOH B 507 HOH B 512 SITE 7 AC4 27 HOH B 513 HOH B 535 HOH B 569 SITE 1 AC5 4 LYS B 289 ALA B 319 TRP B 320 LEU B 321 CRYST1 78.000 78.170 114.241 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012821 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008753 0.00000 MASTER 382 0 5 31 18 0 17 6 0 0 0 48 END