HEADER TRANSCRIPTION/DNA 05-AUG-15 5D23 TITLE THE CRYSTAL STRUCTURE OF STPR FROM BOMBYX MORI IN COMPLEX WITH 13-BP TITLE 2 DNA DERIVED FROM THE +290 SITE OF FIBROIN GENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROIN-MODULATOR-BINDING PROTEIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 99-193; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (26-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: FMBP-1, FMBP-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, ALL A-HELIX, MAJOR GROOVE BINDING PATTERN, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.CHENG REVDAT 1 23-MAR-16 5D23 0 JRNL AUTH L.Y.YU,W.CHENG,K.ZHOU,W.F.LI,H.M.YU,X.GAO,X.SHEN,Q.WU, JRNL AUTH 2 Y.CHEN,C.Z.ZHOU JRNL TITL STRUCTURES OF AN ALL-ALPHA PROTEIN RUNNING ALONG THE DNA JRNL TITL 2 MAJOR GROOVE. JRNL REF NUCLEIC ACIDS RES. 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26939889 JRNL DOI 10.1093/NAR/GKW133 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 14672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1081 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 508 REMARK 3 NUCLEIC ACID ATOMS : 527 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : 2.92000 REMARK 3 B12 (A**2) : -0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.537 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1101 ; 0.007 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 821 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1587 ; 1.299 ; 1.525 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1884 ; 1.209 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 63 ; 4.221 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ;25.064 ;17.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 91 ;13.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 881 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 254 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 255 ; 1.580 ; 3.086 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 254 ; 1.567 ; 3.077 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 317 ; 2.503 ; 4.609 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 318 ; 2.500 ; 4.618 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 845 ; 1.641 ; 2.700 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 844 ; 1.642 ; 2.701 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1270 ; 2.533 ; 4.025 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1481 ; 6.317 ;24.787 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1432 ; 6.161 ;24.163 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4050 -21.0890 -23.0120 REMARK 3 T TENSOR REMARK 3 T11: 1.0755 T22: 1.5180 REMARK 3 T33: 0.5545 T12: 0.3778 REMARK 3 T13: 0.4146 T23: -0.2727 REMARK 3 L TENSOR REMARK 3 L11: 48.2355 L22: 92.4499 REMARK 3 L33: 81.4850 L12: -18.1626 REMARK 3 L13: 57.1778 L23: -55.7817 REMARK 3 S TENSOR REMARK 3 S11: 0.9237 S12: -0.0584 S13: -0.7491 REMARK 3 S21: -3.1082 S22: -0.5631 S23: -1.0739 REMARK 3 S31: 2.2317 S32: 0.2263 S33: -0.3606 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8410 -19.8940 -17.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.4070 REMARK 3 T33: 0.4167 T12: -0.0389 REMARK 3 T13: 0.2200 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 9.6920 L22: 13.9488 REMARK 3 L33: 8.6799 L12: 7.8828 REMARK 3 L13: 5.3117 L23: -2.2687 REMARK 3 S TENSOR REMARK 3 S11: -0.1474 S12: 0.9157 S13: -0.6670 REMARK 3 S21: -0.5975 S22: -0.1898 S23: -1.3123 REMARK 3 S31: 0.3473 S32: 1.3409 S33: 0.3372 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0480 -18.2340 -7.3500 REMARK 3 T TENSOR REMARK 3 T11: 0.0242 T22: 0.1857 REMARK 3 T33: 0.3007 T12: -0.0327 REMARK 3 T13: 0.0647 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 13.2734 L22: 9.3769 REMARK 3 L33: 22.1438 L12: 7.1572 REMARK 3 L13: -10.7359 L23: 2.8285 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.9466 S13: -0.9524 REMARK 3 S21: 0.0778 S22: -0.6066 S23: -0.6589 REMARK 3 S31: 0.0736 S32: 0.6037 S33: 0.5686 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2480 -16.4670 2.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.2999 REMARK 3 T33: 0.1125 T12: -0.2038 REMARK 3 T13: -0.0940 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 17.0245 L22: 12.2314 REMARK 3 L33: 4.1897 L12: -7.2829 REMARK 3 L13: -2.1258 L23: -4.4404 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: -0.6528 S13: -0.4750 REMARK 3 S21: 0.8496 S22: -0.2568 S23: -0.5137 REMARK 3 S31: -0.4745 S32: 0.5587 S33: 0.3410 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3260 -13.3080 -7.8410 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.1345 REMARK 3 T33: 0.1309 T12: -0.1089 REMARK 3 T13: 0.0052 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 8.3796 L22: 5.0791 REMARK 3 L33: 8.8279 L12: 1.8338 REMARK 3 L13: 6.8299 L23: 0.5732 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: -0.4464 S13: 0.1254 REMARK 3 S21: -0.2114 S22: -0.2712 S23: 0.1066 REMARK 3 S31: -0.5653 S32: -0.0072 S33: 0.3418 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2080 -13.9740 -23.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.5227 T22: 0.0366 REMARK 3 T33: 0.2390 T12: -0.0580 REMARK 3 T13: -0.2170 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 7.2006 L22: 10.5120 REMARK 3 L33: 17.3867 L12: 6.3596 REMARK 3 L13: 3.1539 L23: 11.6353 REMARK 3 S TENSOR REMARK 3 S11: -0.7775 S12: 0.1308 S13: 0.4303 REMARK 3 S21: -0.9804 S22: 0.4025 S23: 0.4703 REMARK 3 S31: -0.8277 S32: 0.5511 S33: 0.3750 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5230 -22.5630 -25.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.3639 T22: 0.0946 REMARK 3 T33: 0.1358 T12: -0.0852 REMARK 3 T13: -0.0895 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.0197 L22: 14.1372 REMARK 3 L33: 3.7355 L12: -0.5900 REMARK 3 L13: 1.9714 L23: -5.6050 REMARK 3 S TENSOR REMARK 3 S11: -0.3699 S12: 0.1113 S13: 0.1807 REMARK 3 S21: -1.0364 S22: 0.3540 S23: 0.4139 REMARK 3 S31: 0.0484 S32: -0.0297 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6010 -33.5450 -19.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1028 REMARK 3 T33: 0.0674 T12: 0.0220 REMARK 3 T13: -0.0237 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 1.2760 L22: 22.5640 REMARK 3 L33: 7.1684 L12: -3.0820 REMARK 3 L13: 2.1975 L23: -6.2534 REMARK 3 S TENSOR REMARK 3 S11: -0.1599 S12: -0.0332 S13: 0.0289 REMARK 3 S21: 0.3373 S22: 0.2733 S23: -0.4786 REMARK 3 S31: 0.0184 S32: 0.1583 S33: -0.1134 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -17 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3310 -19.1270 -14.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.1975 REMARK 3 T33: 0.1558 T12: -0.1039 REMARK 3 T13: 0.0362 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 5.6018 L22: 3.8589 REMARK 3 L33: 1.7013 L12: 4.4479 REMARK 3 L13: 1.0755 L23: 0.7991 REMARK 3 S TENSOR REMARK 3 S11: -0.3708 S12: 0.2232 S13: -0.3133 REMARK 3 S21: -0.5434 S22: 0.3081 S23: -0.2707 REMARK 3 S31: -0.1080 S32: 0.2624 S33: 0.0627 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 20% 2-PROPANOL, 0.1M REMARK 280 SODIUM CITRATE PH5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 61.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.55900 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.52467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 61.59000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.55900 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.52467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 61.59000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.55900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.52467 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 61.59000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.55900 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.52467 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 61.59000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.55900 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.52467 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 61.59000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.55900 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.52467 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.11801 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.04933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 71.11801 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.04933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 71.11801 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 49.04933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 71.11801 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.04933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 71.11801 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 49.04933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 71.11801 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 49.04933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 211 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 229 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 GLU A 99 REMARK 465 THR A 100 REMARK 465 SER A 101 REMARK 465 GLU A 102 REMARK 465 GLU A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 465 ALA A 106 REMARK 465 ARG A 107 REMARK 465 LEU A 108 REMARK 465 ALA A 109 REMARK 465 LYS A 110 REMARK 465 MSE A 111 REMARK 465 SER A 112 REMARK 465 ALA A 113 REMARK 465 TYR A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 GLN A 117 REMARK 465 ARG A 118 REMARK 465 LEU A 119 REMARK 465 ALA A 120 REMARK 465 ASN A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 PRO A 124 REMARK 465 GLU A 125 REMARK 465 GLN A 126 REMARK 465 LYS A 191 REMARK 465 LYS A 192 REMARK 465 SER A 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 DT B 5 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 13 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D2S RELATED DB: PDB REMARK 900 RELATED ID: 5D2Q RELATED DB: PDB DBREF 5D23 A 99 193 UNP Q5FBS0 Q5FBS0_BOMMO 99 193 DBREF 5D23 B -17 17 PDB 5D23 5D23 -17 17 SEQADV 5D23 MSE A 92 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D23 HIS A 93 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D23 HIS A 94 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D23 HIS A 95 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D23 HIS A 96 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D23 HIS A 97 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D23 HIS A 98 UNP Q5FBS0 EXPRESSION TAG SEQRES 1 A 102 MSE HIS HIS HIS HIS HIS HIS GLU THR SER GLU GLU ARG SEQRES 2 A 102 ALA ALA ARG LEU ALA LYS MSE SER ALA TYR ALA ALA GLN SEQRES 3 A 102 ARG LEU ALA ASN GLU SER PRO GLU GLN ARG ALA THR ARG SEQRES 4 A 102 LEU LYS ARG MSE SER GLU TYR ALA ALA LYS ARG LEU SER SEQRES 5 A 102 SER GLU THR ARG GLU GLN ARG ALA ILE ARG LEU ALA ARG SEQRES 6 A 102 MSE SER ALA TYR ALA ALA ARG ARG LEU ALA ASN GLU THR SEQRES 7 A 102 PRO ALA GLN ARG GLN ALA ARG LEU LEU ARG MSE SER ALA SEQRES 8 A 102 TYR ALA ALA LYS ARG GLN ALA SER LYS LYS SER SEQRES 1 B 26 DG DA DA DT DC DT DA DT DG DT DA DA DA SEQRES 2 B 26 DT DT DT DA DC DA DT DA DG DA DT DT DC MODRES 5D23 MSE A 134 MET MODIFIED RESIDUE MODRES 5D23 MSE A 157 MET MODIFIED RESIDUE MODRES 5D23 MSE A 180 MET MODIFIED RESIDUE HET MSE A 134 8 HET MSE A 157 8 HET MSE A 180 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 HOH *92(H2 O) HELIX 1 AA1 ARG A 127 GLU A 145 1 19 HELIX 2 AA2 THR A 146 GLU A 168 1 23 HELIX 3 AA3 THR A 169 SER A 190 1 22 LINK C ARG A 133 N MSE A 134 1555 1555 1.33 LINK C MSE A 134 N SER A 135 1555 1555 1.34 LINK C ARG A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N SER A 158 1555 1555 1.33 LINK C ARG A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N SER A 181 1555 1555 1.33 CRYST1 123.180 123.180 73.574 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008118 0.004687 0.000000 0.00000 SCALE2 0.000000 0.009374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013592 0.00000 MASTER 543 0 3 3 0 0 0 6 0 0 0 10 END