HEADER TRANSPORT PROTEIN 28-JUL-15 5CWT TITLE CRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM NUP57 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP57; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 265-317; COMPND 5 SYNONYM: NUCLEAR PORE PROTEIN NUP57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 6 GENE: NUP57, CTHT_0010940; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOCYTOPLASMIC TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.J.BLEY,A.HOELZ REVDAT 8 25-DEC-19 5CWT 1 REMARK REVDAT 7 01-NOV-17 5CWT 1 REMARK REVDAT 6 27-SEP-17 5CWT 1 REMARK REVDAT 5 20-JUL-16 5CWT 1 REMARK REVDAT 4 14-OCT-15 5CWT 1 JRNL REVDAT 3 30-SEP-15 5CWT 1 TITLE REVDAT 2 23-SEP-15 5CWT 1 JRNL REVDAT 1 16-SEP-15 5CWT 0 JRNL AUTH T.STUWE,C.J.BLEY,K.THIERBACH,S.PETROVIC,S.SCHILBACH, JRNL AUTH 2 D.J.MAYO,T.PERRICHES,E.J.RUNDLET,Y.E.JEON,L.N.COLLINS, JRNL AUTH 3 F.M.HUBER,D.H.LIN,M.PADUCH,A.KOIDE,V.LU,J.FISCHER,E.HURT, JRNL AUTH 4 S.KOIDE,A.A.KOSSIAKOFF,A.HOELZ JRNL TITL ARCHITECTURE OF THE FUNGAL NUCLEAR PORE INNER RING COMPLEX. JRNL REF SCIENCE V. 350 56 2015 JRNL REFN ESSN 1095-9203 JRNL PMID 26316600 JRNL DOI 10.1126/SCIENCE.AAC9176 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 8126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.6549 - 2.5000 0.00 0 0 0.0000 0.3117 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1321 REMARK 3 ANGLE : 0.443 1749 REMARK 3 CHIRALITY : 0.031 174 REMARK 3 PLANARITY : 0.001 226 REMARK 3 DIHEDRAL : 14.238 541 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 58.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 % (W/V) PEG 1,000 12 % (W/V) PEG REMARK 280 8,000, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.12600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.35450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.18050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.35450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.12600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.18050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: NUP57 IS A HOMO-DIMER IN SOLUTION BY SEC-MALS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 ASP A 1 REMARK 465 GLN A 2 REMARK 465 ILE A 3 REMARK 465 ASN A 4 REMARK 465 GLN A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLN A 53 REMARK 465 SER B 0 REMARK 465 ASP B 1 REMARK 465 GLN B 2 REMARK 465 ILE B 3 REMARK 465 ASN B 4 REMARK 465 GLN B 5 REMARK 465 ALA B 6 REMARK 465 GLY B 7 REMARK 465 ILE B 8 REMARK 465 THR B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 ASP B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 GLY B 15 REMARK 465 GLU B 16 REMARK 465 GLN B 53 REMARK 465 SER C 0 REMARK 465 ASP C 1 REMARK 465 GLN C 2 REMARK 465 ILE C 3 REMARK 465 ASN C 4 REMARK 465 GLN C 5 REMARK 465 ALA C 6 REMARK 465 GLY C 7 REMARK 465 ILE C 8 REMARK 465 THR C 9 REMARK 465 GLU C 10 REMARK 465 SER C 11 REMARK 465 ASP C 12 REMARK 465 GLN C 53 REMARK 465 SER D 0 REMARK 465 ASP D 1 REMARK 465 GLN D 2 REMARK 465 ILE D 3 REMARK 465 ASN D 4 REMARK 465 GLN D 5 REMARK 465 ALA D 6 REMARK 465 GLY D 7 REMARK 465 ILE D 8 REMARK 465 THR D 9 REMARK 465 GLU D 10 REMARK 465 SER D 11 REMARK 465 ASP D 12 REMARK 465 GLY D 13 REMARK 465 LEU D 14 REMARK 465 GLY D 15 REMARK 465 GLU D 16 REMARK 465 GLU D 17 REMARK 465 GLN D 53 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CWU RELATED DB: PDB REMARK 900 RELATED ID: 5CWV RELATED DB: PDB REMARK 900 RELATED ID: 5CWW RELATED DB: PDB DBREF 5CWT A 1 53 UNP G0S0R2 NUP57_CHATD 265 317 DBREF 5CWT B 1 53 UNP G0S0R2 NUP57_CHATD 265 317 DBREF 5CWT C 1 53 UNP G0S0R2 NUP57_CHATD 265 317 DBREF 5CWT D 1 53 UNP G0S0R2 NUP57_CHATD 265 317 SEQADV 5CWT SER A 0 UNP G0S0R2 EXPRESSION TAG SEQADV 5CWT SER B 0 UNP G0S0R2 EXPRESSION TAG SEQADV 5CWT SER C 0 UNP G0S0R2 EXPRESSION TAG SEQADV 5CWT SER D 0 UNP G0S0R2 EXPRESSION TAG SEQRES 1 A 54 SER ASP GLN ILE ASN GLN ALA GLY ILE THR GLU SER ASP SEQRES 2 A 54 GLY LEU GLY GLU GLU ILE GLU ALA LYS ALA LYS LYS ILE SEQRES 3 A 54 LEU GLU ASP TYR ASP LYS GLN LEU GLN HIS LEU LYS LYS SEQRES 4 A 54 GLN VAL GLU GLU ALA LYS LYS ASP PHE GLU GLU TRP GLU SEQRES 5 A 54 LYS GLN SEQRES 1 B 54 SER ASP GLN ILE ASN GLN ALA GLY ILE THR GLU SER ASP SEQRES 2 B 54 GLY LEU GLY GLU GLU ILE GLU ALA LYS ALA LYS LYS ILE SEQRES 3 B 54 LEU GLU ASP TYR ASP LYS GLN LEU GLN HIS LEU LYS LYS SEQRES 4 B 54 GLN VAL GLU GLU ALA LYS LYS ASP PHE GLU GLU TRP GLU SEQRES 5 B 54 LYS GLN SEQRES 1 C 54 SER ASP GLN ILE ASN GLN ALA GLY ILE THR GLU SER ASP SEQRES 2 C 54 GLY LEU GLY GLU GLU ILE GLU ALA LYS ALA LYS LYS ILE SEQRES 3 C 54 LEU GLU ASP TYR ASP LYS GLN LEU GLN HIS LEU LYS LYS SEQRES 4 C 54 GLN VAL GLU GLU ALA LYS LYS ASP PHE GLU GLU TRP GLU SEQRES 5 C 54 LYS GLN SEQRES 1 D 54 SER ASP GLN ILE ASN GLN ALA GLY ILE THR GLU SER ASP SEQRES 2 D 54 GLY LEU GLY GLU GLU ILE GLU ALA LYS ALA LYS LYS ILE SEQRES 3 D 54 LEU GLU ASP TYR ASP LYS GLN LEU GLN HIS LEU LYS LYS SEQRES 4 D 54 GLN VAL GLU GLU ALA LYS LYS ASP PHE GLU GLU TRP GLU SEQRES 5 D 54 LYS GLN FORMUL 5 HOH *18(H2 O) HELIX 1 AA1 GLY A 13 GLU A 51 1 39 HELIX 2 AA2 ILE B 18 GLU B 51 1 34 HELIX 3 AA3 LEU C 14 LYS C 52 1 39 HELIX 4 AA4 GLU D 19 GLU D 51 1 33 CRYST1 42.252 42.361 138.709 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007209 0.00000 MASTER 281 0 0 4 0 0 0 6 0 0 0 20 END