HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-JUL-15 5CQJ TITLE CRYSTAL STRUCTURE OF E. COLI UNDECAPRENYL PYROPHOSPHATE SYNTHASE IN TITLE 2 COMPLEX WITH CLOMIPHENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE SYNTHASE ((2E,6E)- COMPND 3 FARNESYL-DIPHOSPHATE SPECIFIC); COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DITRANS,POLYCIS-UNDECAPRENYLCISTRANSFERASE,UNDECAPRENYL COMPND 6 DIPHOSPHATE SYNTHASE,UDS,UNDECAPRENYL PYROPHOSPHATE SYNTHASE,UPP COMPND 7 SYNTHASE; COMPND 8 EC: 2.5.1.31; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ISPU, RTH, UPPS, YAES, B0174, JW0169; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, CELL WALL, WALL TEICHOIC ACID, ANTIBACTERIAL, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.J.WORRALL,D.G.CONRADY,N.C.STRYNADKA REVDAT 5 12-FEB-20 5CQJ 1 COMPND REMARK FORMUL REVDAT 4 22-NOV-17 5CQJ 1 JRNL REMARK REVDAT 3 09-SEP-15 5CQJ 1 JRNL REVDAT 2 02-SEP-15 5CQJ 1 JRNL REVDAT 1 19-AUG-15 5CQJ 0 JRNL AUTH M.A.FARHA,T.L.CZARNY,C.L.MYERS,L.J.WORRALL,S.FRENCH, JRNL AUTH 2 D.G.CONRADY,Y.WANG,E.OLDFIELD,N.C.STRYNADKA,E.D.BROWN JRNL TITL ANTAGONISM SCREEN FOR INHIBITORS OF BACTERIAL CELL WALL JRNL TITL 2 BIOGENESIS UNCOVERS AN INHIBITOR OF UNDECAPRENYL DIPHOSPHATE JRNL TITL 3 SYNTHASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 11048 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26283394 JRNL DOI 10.1073/PNAS.1511751112 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 25327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5090 - 4.4660 0.99 2970 188 0.1649 0.2032 REMARK 3 2 4.4660 - 3.5475 1.00 2858 169 0.1531 0.2244 REMARK 3 3 3.5475 - 3.0998 0.99 2875 125 0.1767 0.2783 REMARK 3 4 3.0998 - 2.8168 0.99 2859 119 0.1988 0.2604 REMARK 3 5 2.8168 - 2.6151 0.99 2819 133 0.1965 0.2431 REMARK 3 6 2.6151 - 2.4610 0.99 2783 133 0.1962 0.2676 REMARK 3 7 2.4610 - 2.3378 0.97 2736 144 0.2100 0.2805 REMARK 3 8 2.3378 - 2.2361 0.83 2333 127 0.2341 0.2830 REMARK 3 9 2.2361 - 2.1501 0.66 1841 115 0.2524 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3392 REMARK 3 ANGLE : 1.055 4579 REMARK 3 CHIRALITY : 0.041 490 REMARK 3 PLANARITY : 0.005 628 REMARK 3 DIHEDRAL : 14.202 1245 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5852 -0.7030 -1.8978 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.1244 REMARK 3 T33: 0.1407 T12: 0.0052 REMARK 3 T13: 0.0002 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.5261 L22: 1.6949 REMARK 3 L33: 1.8950 L12: -0.6255 REMARK 3 L13: 0.4837 L23: -1.0975 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: 0.1402 S13: 0.1220 REMARK 3 S21: -0.0805 S22: -0.1703 S23: -0.1922 REMARK 3 S31: 0.1499 S32: 0.0098 S33: 0.2189 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3850 -3.6849 -6.2219 REMARK 3 T TENSOR REMARK 3 T11: 0.1825 T22: 0.2902 REMARK 3 T33: 0.1807 T12: -0.0067 REMARK 3 T13: -0.0066 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 2.3616 L22: 7.7966 REMARK 3 L33: 2.4465 L12: -2.4358 REMARK 3 L13: 0.6437 L23: -2.9862 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.2589 S13: 0.0452 REMARK 3 S21: -0.4044 S22: 0.1117 S23: 0.0398 REMARK 3 S31: 0.1795 S32: -0.3082 S33: -0.0683 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0912 -5.1759 4.4332 REMARK 3 T TENSOR REMARK 3 T11: 0.2288 T22: 0.3877 REMARK 3 T33: 0.3417 T12: -0.0254 REMARK 3 T13: 0.0045 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.2325 L22: 1.6407 REMARK 3 L33: 2.2632 L12: 0.0405 REMARK 3 L13: 0.3594 L23: 0.5094 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -0.1639 S13: 0.0683 REMARK 3 S21: -0.1777 S22: -0.0000 S23: 0.5053 REMARK 3 S31: -0.1224 S32: -0.8318 S33: 0.0040 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7300 -4.1739 13.7809 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.1634 REMARK 3 T33: 0.1855 T12: -0.0293 REMARK 3 T13: 0.0401 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7997 L22: 0.8644 REMARK 3 L33: 1.4477 L12: 0.0070 REMARK 3 L13: 0.3134 L23: -0.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.1254 S13: -0.0073 REMARK 3 S21: 0.1238 S22: -0.0599 S23: 0.0994 REMARK 3 S31: 0.2057 S32: -0.1807 S33: 0.0608 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7947 5.0080 21.8111 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.2287 REMARK 3 T33: 0.2005 T12: 0.0184 REMARK 3 T13: 0.0118 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.3196 L22: 2.7548 REMARK 3 L33: 1.6376 L12: -1.1220 REMARK 3 L13: -0.4784 L23: 0.5383 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: -0.2241 S13: -0.1262 REMARK 3 S21: 0.0472 S22: 0.1792 S23: -0.2887 REMARK 3 S31: 0.1631 S32: 0.4317 S33: -0.1012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1649 10.0553 35.5544 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.2854 REMARK 3 T33: 0.1995 T12: -0.0225 REMARK 3 T13: -0.0129 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 3.0604 L22: 3.9726 REMARK 3 L33: 1.7907 L12: 1.6699 REMARK 3 L13: 0.0355 L23: -0.7175 REMARK 3 S TENSOR REMARK 3 S11: 0.2633 S12: -0.6636 S13: -0.1641 REMARK 3 S21: 0.2767 S22: -0.2682 S23: -0.4300 REMARK 3 S31: 0.0015 S32: 0.1617 S33: 0.0129 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2211 7.3124 25.0456 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.1451 REMARK 3 T33: 0.1289 T12: -0.0181 REMARK 3 T13: 0.0255 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.0592 L22: 1.2704 REMARK 3 L33: 0.7629 L12: 0.3159 REMARK 3 L13: 0.3764 L23: 0.6211 REMARK 3 S TENSOR REMARK 3 S11: 0.0847 S12: -0.1060 S13: 0.0529 REMARK 3 S21: 0.1123 S22: -0.0822 S23: 0.0274 REMARK 3 S31: -0.0528 S32: -0.0894 S33: -0.0279 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 0.3.11, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25369 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 27.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.5, 0.16 M CALCIUM REMARK 280 ACETATE, 20 % PEG 8000, 20 % GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.65600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.24400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.65600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.24400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 LYS A 12 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 TRP A 75 REMARK 465 ASN A 76 REMARK 465 ARG A 77 REMARK 465 PRO A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 VAL A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 LEU A 85 REMARK 465 MET A 86 REMARK 465 ARG A 241 REMARK 465 ARG A 242 REMARK 465 PHE A 243 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 PRO A 248 REMARK 465 GLY A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 THR A 252 REMARK 465 ALA A 253 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 GLU B 11 REMARK 465 LYS B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 HIS B 16 REMARK 465 SER B 71 REMARK 465 SER B 72 REMARK 465 GLU B 73 REMARK 465 ASN B 74 REMARK 465 TRP B 75 REMARK 465 ASN B 76 REMARK 465 ARG B 77 REMARK 465 PRO B 78 REMARK 465 ALA B 79 REMARK 465 GLN B 80 REMARK 465 GLU B 81 REMARK 465 VAL B 82 REMARK 465 SER B 83 REMARK 465 ALA B 84 REMARK 465 LEU B 85 REMARK 465 MET B 86 REMARK 465 GLU B 87 REMARK 465 LEU B 88 REMARK 465 ARG B 241 REMARK 465 ARG B 242 REMARK 465 PHE B 243 REMARK 465 GLY B 244 REMARK 465 GLY B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 PRO B 248 REMARK 465 GLY B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 ALA B 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 TRP A 91 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 91 CZ3 CH2 REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 91 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 91 CZ3 CH2 REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 199 59.94 -113.94 REMARK 500 PHE A 204 -149.35 -73.23 REMARK 500 LEU A 206 -62.60 -124.21 REMARK 500 ASP A 225 -164.84 -123.33 REMARK 500 LEU B 93 -73.45 -59.14 REMARK 500 HIS B 199 64.77 -107.17 REMARK 500 PHE B 204 -151.98 -72.55 REMARK 500 LEU B 206 -58.66 -123.80 REMARK 500 ASP B 225 -164.86 -120.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 53Q A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 53Q A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CQB RELATED DB: PDB REMARK 900 5CQB CONTAINS THE APO PROTEIN DBREF 5CQJ A 1 253 UNP P60472 UPPS_ECOLI 1 253 DBREF 5CQJ B 1 253 UNP P60472 UPPS_ECOLI 1 253 SEQRES 1 A 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 A 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP SEQRES 3 A 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 A 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 A 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 A 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 A 253 ALA GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP SEQRES 8 A 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 A 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 A 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 A 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 A 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 A 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 A 253 ASP GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS SEQRES 15 A 253 MET HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 A 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 A 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 A 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 A 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 A 253 PRO GLY ASP GLU THR ALA SEQRES 1 B 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU SEQRES 2 B 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MET ASP SEQRES 3 B 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG SEQRES 4 B 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG SEQRES 5 B 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU SEQRES 6 B 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO SEQRES 7 B 253 ALA GLN GLU VAL SER ALA LEU MET GLU LEU PHE VAL TRP SEQRES 8 B 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN SEQRES 9 B 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN SEQRES 10 B 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU SEQRES 11 B 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA SEQRES 12 B 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG SEQRES 13 B 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO SEQRES 14 B 253 ASP GLN ILE ASP GLU GLU MET LEU ASN GLN HIS VAL CYS SEQRES 15 B 253 MET HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR SEQRES 16 B 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN SEQRES 17 B 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP SEQRES 18 B 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN SEQRES 19 B 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU SEQRES 20 B 253 PRO GLY ASP GLU THR ALA HET 53Q A 301 23 HETNAM 53Q CLOMIFENE HETSYN 53Q 1-[(E)-2-CHLORO-1,2-DIPHENYLETHENYL]-4-METHOXYBENZENE, HETSYN 2 53Q CLOMIPHENE FORMUL 3 53Q C26 H28 CL N O FORMUL 4 HOH *96(H2 O) HELIX 1 AA1 GLY A 27 GLN A 35 1 9 HELIX 2 AA2 ILE A 38 ASN A 59 1 22 HELIX 3 AA3 LEU A 88 HIS A 103 1 16 HELIX 4 AA4 ASP A 112 PHE A 116 5 5 HELIX 5 AA5 ARG A 119 ALA A 132 1 14 HELIX 6 AA6 GLY A 146 GLN A 164 1 19 HELIX 7 AA7 GLN A 168 ILE A 172 5 5 HELIX 8 AA8 ASP A 173 GLN A 179 1 7 HELIX 9 AA9 LEU A 206 ALA A 210 5 5 HELIX 10 AB1 LEU A 220 PHE A 224 5 5 HELIX 11 AB2 ASP A 225 ARG A 239 1 15 HELIX 12 AB3 GLY B 27 GLN B 35 1 9 HELIX 13 AB4 ILE B 38 ASN B 60 1 23 HELIX 14 AB5 TRP B 91 HIS B 103 1 13 HELIX 15 AB6 ASN B 117 ALA B 132 1 16 HELIX 16 AB7 GLY B 146 GLN B 164 1 19 HELIX 17 AB8 GLN B 168 ILE B 172 5 5 HELIX 18 AB9 ASP B 173 GLN B 179 1 7 HELIX 19 AC1 LEU B 206 ALA B 210 5 5 HELIX 20 AC2 LEU B 220 PHE B 224 5 5 HELIX 21 AC3 ASP B 225 ASN B 238 1 14 SHEET 1 AA1 6 ARG A 106 ILE A 110 0 SHEET 2 AA1 6 THR A 138 ALA A 142 1 O ILE A 141 N ARG A 108 SHEET 3 AA1 6 ALA A 64 TYR A 68 1 N LEU A 67 O ALA A 142 SHEET 4 AA1 6 HIS A 20 ILE A 24 1 N ILE A 23 O THR A 66 SHEET 5 AA1 6 LEU A 191 ARG A 194 1 O ILE A 193 N ILE A 24 SHEET 6 AA1 6 GLU A 213 PHE A 216 1 O GLU A 213 N VAL A 192 SHEET 1 AA2 6 ARG B 106 ILE B 110 0 SHEET 2 AA2 6 THR B 138 ALA B 142 1 O LEU B 139 N ARG B 106 SHEET 3 AA2 6 ALA B 64 ALA B 69 1 N LEU B 67 O ALA B 142 SHEET 4 AA2 6 HIS B 20 MET B 25 1 N VAL B 21 O THR B 66 SHEET 5 AA2 6 LEU B 191 ARG B 194 1 O ILE B 193 N ALA B 22 SHEET 6 AA2 6 GLU B 213 PHE B 216 1 O GLU B 213 N VAL B 192 SITE 1 AC1 7 ASN A 28 HIS A 43 GLY A 46 ALA A 47 SITE 2 AC1 7 ALA A 92 SER A 95 GLU A 96 CRYST1 63.312 68.488 111.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015795 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008958 0.00000 MASTER 457 0 1 21 12 0 2 6 0 0 0 40 END