HEADER HYDROLASE 21-JUL-15 5CQH TITLE CRYSTAL STRUCTURE OF THE CANCER GENOMIC DNA MUTATOR APOBEC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC-DU-EDITING ENZYME APOBEC-3B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 187-378; COMPND 5 SYNONYM: A3B,PHORBOLIN-1-RELATED PROTEIN,PHORBOLIN-2/3; COMPND 6 EC: 3.5.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOBEC, DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,K.KURAHASHI,H.AIHARA REVDAT 6 25-DEC-19 5CQH 1 REMARK REVDAT 5 27-SEP-17 5CQH 1 REMARK REVDAT 4 20-JUL-16 5CQH 1 REMARK REVDAT 3 02-DEC-15 5CQH 1 JRNL REVDAT 2 14-OCT-15 5CQH 1 JRNL REVDAT 1 07-OCT-15 5CQH 0 JRNL AUTH K.SHI,M.A.CARPENTER,K.KURAHASHI,R.S.HARRIS,H.AIHARA JRNL TITL CRYSTAL STRUCTURE OF THE DNA DEAMINASE APOBEC3B CATALYTIC JRNL TITL 2 DOMAIN. JRNL REF J.BIOL.CHEM. V. 290 28120 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26416889 JRNL DOI 10.1074/JBC.M115.679951 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2067: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7383 - 3.3090 0.99 2781 140 0.1407 0.1614 REMARK 3 2 3.3090 - 2.6266 1.00 2686 126 0.1494 0.1777 REMARK 3 3 2.6266 - 2.2946 1.00 2625 166 0.1440 0.1815 REMARK 3 4 2.2946 - 2.0848 1.00 2603 160 0.1444 0.1901 REMARK 3 5 2.0848 - 1.9354 1.00 2655 121 0.1584 0.1998 REMARK 3 6 1.9354 - 1.8213 1.00 2581 148 0.1781 0.2268 REMARK 3 7 1.8213 - 1.7301 1.00 2615 137 0.2306 0.2940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1614 REMARK 3 ANGLE : 1.652 2189 REMARK 3 CHIRALITY : 0.100 225 REMARK 3 PLANARITY : 0.010 285 REMARK 3 DIHEDRAL : 17.201 948 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6908 -11.9846 -4.1927 REMARK 3 T TENSOR REMARK 3 T11: 0.1033 T22: 0.1739 REMARK 3 T33: 0.0932 T12: 0.0250 REMARK 3 T13: 0.0046 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 6.9200 L22: 5.8884 REMARK 3 L33: 6.0428 L12: 2.1456 REMARK 3 L13: -1.4288 L23: -2.5237 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.4256 S13: 0.0791 REMARK 3 S21: -0.3117 S22: 0.1543 S23: -0.2504 REMARK 3 S31: 0.1061 S32: 0.0803 S33: -0.0753 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6082 -10.6088 4.6285 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.1157 REMARK 3 T33: 0.0593 T12: 0.0161 REMARK 3 T13: -0.0023 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.1178 L22: 2.5190 REMARK 3 L33: 1.9461 L12: 0.2958 REMARK 3 L13: -0.0800 L23: -0.1907 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.0475 S13: -0.0769 REMARK 3 S21: -0.0283 S22: -0.0649 S23: -0.0299 REMARK 3 S31: -0.0207 S32: 0.0372 S33: -0.0169 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9968 1.9111 -2.8619 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1950 REMARK 3 T33: 0.1854 T12: 0.0378 REMARK 3 T13: -0.0148 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 5.4260 L22: 6.2463 REMARK 3 L33: 2.5519 L12: -4.8021 REMARK 3 L13: 2.3781 L23: -1.5943 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.2150 S13: 0.3324 REMARK 3 S21: -0.3552 S22: -0.1196 S23: 0.2546 REMARK 3 S31: -0.2948 S32: -0.2468 S33: 0.0589 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5535 -4.9282 9.8818 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.1142 REMARK 3 T33: 0.1050 T12: 0.0050 REMARK 3 T13: 0.0014 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.0196 L22: 1.3306 REMARK 3 L33: 1.9046 L12: 0.1634 REMARK 3 L13: 0.0812 L23: 0.1888 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0369 S13: 0.1092 REMARK 3 S21: 0.0961 S22: -0.0236 S23: 0.0022 REMARK 3 S31: -0.1431 S32: -0.0236 S33: 0.0183 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1216 -19.1868 2.4583 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.1191 REMARK 3 T33: 0.1111 T12: 0.0067 REMARK 3 T13: -0.0487 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.0261 L22: 1.9023 REMARK 3 L33: 4.6096 L12: 1.2827 REMARK 3 L13: -0.8512 L23: -1.1335 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.1694 S13: -0.2541 REMARK 3 S21: -0.1297 S22: 0.0350 S23: -0.0394 REMARK 3 S31: 0.3527 S32: -0.1637 S33: -0.0053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MES-NAOH, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.42150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.01750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.22400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.01750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.42150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.22400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 186 REMARK 465 GLU A 187 REMARK 465 ILE A 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 189 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 533 O HOH A 589 1.98 REMARK 500 OD2 ASP A 232 O HOH A 501 2.11 REMARK 500 O HOH A 556 O HOH A 668 2.12 REMARK 500 O HOH A 589 O HOH A 662 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 621 O HOH A 658 3545 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 210 31.40 -151.86 REMARK 500 ASN A 225 72.06 39.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 685 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 253 ND1 REMARK 620 2 CYS A 284 SG 114.4 REMARK 620 3 CYS A 289 SG 113.0 114.0 REMARK 620 4 EDO A 405 O2 100.7 107.1 106.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CQD RELATED DB: PDB REMARK 900 RELATED ID: 5CQI RELATED DB: PDB REMARK 900 RELATED ID: 5CQK RELATED DB: PDB DBREF 5CQH A 187 378 UNP Q9UH17 ABC3B_HUMAN 187 378 SEQADV 5CQH MET A 186 UNP Q9UH17 INITIATING METHIONINE SEQADV 5CQH SER A 200 UNP Q9UH17 PHE 200 CONFLICT SEQADV 5CQH SER A 228 UNP Q9UH17 TRP 228 CONFLICT SEQADV 5CQH LYS A 230 UNP Q9UH17 LEU 230 CONFLICT SEQADV 5CQH A UNP Q9UH17 ALA 242 DELETION SEQADV 5CQH A UNP Q9UH17 LYS 243 DELETION SEQADV 5CQH A UNP Q9UH17 ASN 244 DELETION SEQADV 5CQH A UNP Q9UH17 LEU 245 DELETION SEQADV 5CQH A UNP Q9UH17 LEU 246 DELETION SEQADV 5CQH A UNP Q9UH17 CYS 247 DELETION SEQADV 5CQH A UNP Q9UH17 GLY 248 DELETION SEQADV 5CQH A UNP Q9UH17 PHE 249 DELETION SEQADV 5CQH SER A 250 UNP Q9UH17 TYR 250 CONFLICT SEQADV 5CQH LYS A 308 UNP Q9UH17 PHE 308 CONFLICT SEQADV 5CQH LEU A 379 UNP Q9UH17 EXPRESSION TAG SEQRES 1 A 186 MET GLU ILE LEU ARG TYR LEU MET ASP PRO ASP THR PHE SEQRES 2 A 186 THR SER ASN PHE ASN ASN ASP PRO LEU VAL LEU ARG ARG SEQRES 3 A 186 ARG GLN THR TYR LEU CYS TYR GLU VAL GLU ARG LEU ASP SEQRES 4 A 186 ASN GLY THR SER VAL LYS MET ASP GLN HIS MET GLY PHE SEQRES 5 A 186 LEU CYS ASN GLU SER GLY ARG HIS ALA GLU LEU ARG PHE SEQRES 6 A 186 LEU ASP LEU VAL PRO SER LEU GLN LEU ASP PRO ALA GLN SEQRES 7 A 186 ILE TYR ARG VAL THR TRP PHE ILE SER TRP SER PRO CYS SEQRES 8 A 186 PHE SER TRP GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU SEQRES 9 A 186 GLN GLU ASN THR HIS VAL ARG LEU ARG ILE LYS ALA ALA SEQRES 10 A 186 ARG ILE TYR ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU SEQRES 11 A 186 GLN MET LEU ARG ASP ALA GLY ALA GLN VAL SER ILE MET SEQRES 12 A 186 THR TYR ASP GLU PHE GLU TYR CYS TRP ASP THR PHE VAL SEQRES 13 A 186 TYR ARG GLN GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU SEQRES 14 A 186 GLU GLU HIS SER GLN ALA LEU SER GLY ARG LEU ARG ALA SEQRES 15 A 186 ILE LEU GLN LEU HET ZN A 401 1 HET DC A 402 20 HET CL A 403 1 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HETNAM ZN ZINC ION HETNAM DC 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 DC C9 H14 N3 O7 P FORMUL 4 CL CL 1- FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *185(H2 O) HELIX 1 AA1 ASP A 194 ASN A 203 1 10 HELIX 2 AA2 ASP A 232 MET A 235 5 4 HELIX 3 AA3 HIS A 253 GLN A 266 1 14 HELIX 4 AA4 GLY A 288 ASN A 300 1 13 HELIX 5 AA5 LEU A 318 ALA A 329 1 12 HELIX 6 AA6 THR A 337 VAL A 349 1 13 HELIX 7 AA7 GLY A 361 GLN A 378 1 18 SHEET 1 AA1 3 THR A 227 LYS A 230 0 SHEET 2 AA1 3 TYR A 215 ASP A 224 -1 N ASP A 224 O THR A 227 SHEET 3 AA1 3 GLY A 236 CYS A 239 -1 O GLY A 236 N TYR A 218 SHEET 1 AA2 5 THR A 227 LYS A 230 0 SHEET 2 AA2 5 TYR A 215 ASP A 224 -1 N ASP A 224 O THR A 227 SHEET 3 AA2 5 ILE A 272 ILE A 279 -1 O THR A 276 N GLU A 219 SHEET 4 AA2 5 VAL A 303 ALA A 309 1 O LYS A 308 N TRP A 277 SHEET 5 AA2 5 GLN A 332 ILE A 335 1 O GLN A 332 N ILE A 307 LINK ND1 HIS A 253 ZN ZN A 401 1555 1555 2.00 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 289 ZN ZN A 401 1555 1555 2.27 LINK ZN ZN A 401 O2 EDO A 405 1555 1555 2.07 SITE 1 AC1 4 HIS A 253 CYS A 284 CYS A 289 EDO A 405 SITE 1 AC2 13 ARG A 252 ASP A 260 ASP A 314 TYR A 319 SITE 2 AC2 13 LYS A 320 ARG A 372 HOH A 504 HOH A 549 SITE 3 AC2 13 HOH A 554 HOH A 559 HOH A 598 HOH A 616 SITE 4 AC2 13 HOH A 620 SITE 1 AC3 3 ILE A 335 SER A 370 ARG A 374 SITE 1 AC4 6 PRO A 206 ARG A 252 TRP A 287 GLU A 292 SITE 2 AC4 6 HOH A 510 HOH A 580 SITE 1 AC5 7 THR A 214 HIS A 253 GLU A 255 SER A 282 SITE 2 AC5 7 CYS A 284 CYS A 289 ZN A 401 SITE 1 AC6 6 CYS A 239 THR A 337 TYR A 338 ASP A 339 SITE 2 AC6 6 HOH A 560 HOH A 562 SITE 1 AC7 6 ASP A 339 GLU A 340 TYR A 343 HOH A 516 SITE 2 AC7 6 HOH A 622 HOH A 640 CRYST1 50.843 52.448 68.035 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014698 0.00000 MASTER 417 0 7 7 8 0 14 6 0 0 0 15 END