HEADER HYDROLASE/DNA 16-JUL-15 5CLB TITLE ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3- TITLE 2 METHYLADENINE ANALOG (9-MER A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKD; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*AP*GP*CP*AP*(DZM)P*AP*CP*C)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*TP*GP*GP*TP*TP*TP*GP*CP*T)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 ATCC: 14579; SOURCE 5 GENE: IKE_03968; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBG103; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE, HEAT-LIKE REPEAT, PROTEIN-DNA COMPLEX, HYDROLASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MULLINS,B.F.EICHMAN REVDAT 5 27-NOV-19 5CLB 1 REMARK REVDAT 4 06-SEP-17 5CLB 1 JRNL REMARK REVDAT 3 25-NOV-15 5CLB 1 JRNL REVDAT 2 18-NOV-15 5CLB 1 JRNL REVDAT 1 28-OCT-15 5CLB 0 JRNL AUTH E.A.MULLINS,R.SHI,Z.D.PARSONS,P.K.YUEN,S.S.DAVID,Y.IGARASHI, JRNL AUTH 2 B.F.EICHMAN JRNL TITL THE DNA GLYCOSYLASE ALKD USES A NON-BASE-FLIPPING MECHANISM JRNL TITL 2 TO EXCISE BULKY LESIONS. JRNL REF NATURE V. 527 254 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26524531 JRNL DOI 10.1038/NATURE15728 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 30638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1954 - 3.9268 1.00 2819 149 0.1413 0.1891 REMARK 3 2 3.9268 - 3.1170 1.00 2771 146 0.1485 0.1649 REMARK 3 3 3.1170 - 2.7231 1.00 2745 144 0.1623 0.2124 REMARK 3 4 2.7231 - 2.4741 1.00 2742 144 0.1720 0.1867 REMARK 3 5 2.4741 - 2.2968 1.00 2712 144 0.1569 0.2182 REMARK 3 6 2.2968 - 2.1614 1.00 2737 144 0.1608 0.2201 REMARK 3 7 2.1614 - 2.0531 1.00 2719 143 0.1710 0.2036 REMARK 3 8 2.0531 - 1.9637 0.99 2726 143 0.2020 0.2565 REMARK 3 9 1.9637 - 1.8882 0.96 2604 137 0.2025 0.2386 REMARK 3 10 1.8882 - 1.8230 0.90 2440 129 0.2122 0.2546 REMARK 3 11 1.8230 - 1.7660 0.77 2090 110 0.2278 0.2767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2361 REMARK 3 ANGLE : 1.030 3272 REMARK 3 CHIRALITY : 0.044 350 REMARK 3 PLANARITY : 0.006 351 REMARK 3 DIHEDRAL : 18.597 898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9948 31.8325 16.7795 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.4505 REMARK 3 T33: 0.2340 T12: -0.0330 REMARK 3 T13: 0.0393 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.6817 L22: 6.0745 REMARK 3 L33: 0.9437 L12: 2.0100 REMARK 3 L13: 0.8652 L23: 0.9542 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: -0.1316 S13: 0.4531 REMARK 3 S21: 0.2087 S22: -0.1908 S23: 0.7816 REMARK 3 S31: -0.0422 S32: -0.6849 S33: 0.1062 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6139 45.5448 18.9674 REMARK 3 T TENSOR REMARK 3 T11: 0.3911 T22: 0.3080 REMARK 3 T33: 0.4400 T12: -0.0267 REMARK 3 T13: 0.1953 T23: -0.1500 REMARK 3 L TENSOR REMARK 3 L11: 3.2631 L22: 0.9258 REMARK 3 L33: 1.5307 L12: -1.7372 REMARK 3 L13: -1.9879 L23: 1.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.6148 S12: -0.6334 S13: 1.2262 REMARK 3 S21: 0.3135 S22: -0.1905 S23: 0.2073 REMARK 3 S31: -0.7511 S32: 0.0504 S33: -0.4910 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0972 35.2997 18.4624 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1940 REMARK 3 T33: 0.1527 T12: 0.0238 REMARK 3 T13: 0.0214 T23: -0.0597 REMARK 3 L TENSOR REMARK 3 L11: 5.0206 L22: 3.7438 REMARK 3 L33: 5.4087 L12: 0.6476 REMARK 3 L13: -1.4678 L23: -1.6374 REMARK 3 S TENSOR REMARK 3 S11: 0.1688 S12: -0.3502 S13: 0.2561 REMARK 3 S21: 0.1900 S22: -0.1554 S23: 0.0594 REMARK 3 S31: -0.0961 S32: -0.0901 S33: -0.0135 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4081 25.3221 9.8510 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.4389 REMARK 3 T33: 0.2093 T12: -0.0774 REMARK 3 T13: 0.0261 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 3.9838 L22: 3.7221 REMARK 3 L33: 3.6375 L12: 0.1182 REMARK 3 L13: -0.5878 L23: 0.5231 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.2624 S13: -0.2074 REMARK 3 S21: 0.2037 S22: 0.0762 S23: 0.5186 REMARK 3 S31: 0.3993 S32: -0.7652 S33: -0.1243 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5951 23.3983 7.4922 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.2149 REMARK 3 T33: 0.1682 T12: -0.0284 REMARK 3 T13: 0.0127 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.1334 L22: 3.2837 REMARK 3 L33: 3.2172 L12: -0.1449 REMARK 3 L13: -1.0835 L23: 2.3434 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0760 S13: -0.1694 REMARK 3 S21: 0.3565 S22: -0.1858 S23: 0.1424 REMARK 3 S31: 0.3630 S32: -0.2454 S33: 0.1547 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4613 24.3311 0.2841 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.1328 REMARK 3 T33: 0.1185 T12: -0.0225 REMARK 3 T13: -0.0119 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.1327 L22: 3.7429 REMARK 3 L33: 2.4161 L12: -1.4279 REMARK 3 L13: -0.3098 L23: 1.1709 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0491 S13: -0.0442 REMARK 3 S21: 0.0445 S22: 0.0107 S23: 0.1418 REMARK 3 S31: -0.0005 S32: -0.0951 S33: -0.0356 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7828 23.8852 2.7488 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0919 REMARK 3 T33: 0.0902 T12: -0.0123 REMARK 3 T13: -0.0045 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.3481 L22: 5.7142 REMARK 3 L33: 1.1026 L12: -4.1267 REMARK 3 L13: 1.6632 L23: -1.6385 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.0303 S13: -0.1293 REMARK 3 S21: 0.1447 S22: 0.0788 S23: 0.1027 REMARK 3 S31: -0.0490 S32: -0.0528 S33: -0.0346 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5723 28.0369 0.1384 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0779 REMARK 3 T33: 0.1019 T12: -0.0080 REMARK 3 T13: 0.0008 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.5188 L22: 2.8975 REMARK 3 L33: 2.3831 L12: 0.0278 REMARK 3 L13: 0.4304 L23: -0.9540 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0357 S13: -0.0224 REMARK 3 S21: 0.0430 S22: -0.0606 S23: -0.1691 REMARK 3 S31: -0.0025 S32: 0.1806 S33: 0.0275 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1254 32.8834 4.6819 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1024 REMARK 3 T33: 0.1760 T12: -0.0549 REMARK 3 T13: -0.0229 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 5.9879 L22: 5.7063 REMARK 3 L33: 7.6610 L12: -1.9215 REMARK 3 L13: 1.5470 L23: -0.3961 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.4846 S13: 0.1110 REMARK 3 S21: 0.5077 S22: -0.0412 S23: -0.4899 REMARK 3 S31: -0.2001 S32: 0.1935 S33: 0.0441 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0910 34.0277 17.6214 REMARK 3 T TENSOR REMARK 3 T11: 0.3628 T22: 0.3118 REMARK 3 T33: 0.2317 T12: 0.0016 REMARK 3 T13: 0.0340 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 4.0940 L22: 5.3770 REMARK 3 L33: 6.5093 L12: 1.0462 REMARK 3 L13: -0.2334 L23: -2.1202 REMARK 3 S TENSOR REMARK 3 S11: 0.1523 S12: -0.8118 S13: -0.3771 REMARK 3 S21: 0.9123 S22: -0.0811 S23: 0.2289 REMARK 3 S31: 0.1724 S32: 0.4108 S33: -0.1376 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4743 38.0741 18.6222 REMARK 3 T TENSOR REMARK 3 T11: 0.3648 T22: 0.2613 REMARK 3 T33: 0.2573 T12: -0.0409 REMARK 3 T13: 0.0558 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 5.4206 L22: 3.8432 REMARK 3 L33: 3.5934 L12: 1.3850 REMARK 3 L13: -1.4730 L23: -1.4605 REMARK 3 S TENSOR REMARK 3 S11: 0.1269 S12: -0.7855 S13: -0.2680 REMARK 3 S21: 0.3422 S22: -0.4733 S23: 0.3173 REMARK 3 S31: 0.0600 S32: 0.1693 S33: 0.2289 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30648 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.766 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3BVS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V PEG8000, 50 MM HEPES, PH 7.0, REMARK 280 50 MM CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.71950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.70250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.71950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.70250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 ILE A 52 REMARK 465 HIS A 53 REMARK 465 THR A 54 REMARK 465 GLY A 226 REMARK 465 ILE A 227 REMARK 465 ASN A 228 REMARK 465 ASN A 229 REMARK 465 GLU A 230 REMARK 465 LYS A 231 REMARK 465 ILE A 232 REMARK 465 GLY A 233 REMARK 465 GLU A 234 REMARK 465 THR A 235 REMARK 465 LEU A 236 REMARK 465 SER A 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 342 O HOH A 388 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 118 -65.80 -96.07 REMARK 500 TYR A 134 -50.14 -124.25 REMARK 500 ASP A 142 17.97 55.68 REMARK 500 LYS A 158 -120.12 53.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CL3 RELATED DB: PDB REMARK 900 RELATED ID: 5CL4 RELATED DB: PDB REMARK 900 RELATED ID: 5CL5 RELATED DB: PDB REMARK 900 RELATED ID: 5CL6 RELATED DB: PDB REMARK 900 RELATED ID: 5CL7 RELATED DB: PDB REMARK 900 RELATED ID: 5CL8 RELATED DB: PDB REMARK 900 RELATED ID: 5CL9 RELATED DB: PDB REMARK 900 RELATED ID: 5CLA RELATED DB: PDB REMARK 900 RELATED ID: 5CLC RELATED DB: PDB REMARK 900 RELATED ID: 5CLD RELATED DB: PDB REMARK 900 RELATED ID: 5CLE RELATED DB: PDB DBREF 5CLB A 1 237 UNP R8GWR7 R8GWR7_BACCE 1 237 DBREF 5CLB B 1 9 PDB 5CLB 5CLB 1 9 DBREF 5CLB C 10 18 PDB 5CLB 5CLB 10 18 SEQADV 5CLB GLY A -3 UNP R8GWR7 EXPRESSION TAG SEQADV 5CLB PRO A -2 UNP R8GWR7 EXPRESSION TAG SEQADV 5CLB VAL A -1 UNP R8GWR7 EXPRESSION TAG SEQADV 5CLB PRO A 0 UNP R8GWR7 EXPRESSION TAG SEQRES 1 A 241 GLY PRO VAL PRO MET HIS PRO PHE VAL LYS ALA LEU GLN SEQRES 2 A 241 GLU HIS PHE THR ALA HIS GLN ASN PRO GLU LYS ALA GLU SEQRES 3 A 241 PRO MET ALA ARG TYR MET LYS ASN HIS PHE LEU PHE LEU SEQRES 4 A 241 GLY ILE GLN THR PRO GLU ARG ARG GLN LEU LEU LYS ASP SEQRES 5 A 241 ILE ILE GLN ILE HIS THR LEU PRO ASP GLN LYS ASP PHE SEQRES 6 A 241 GLN ILE ILE ILE ARG GLU LEU TRP ASP LEU PRO GLU ARG SEQRES 7 A 241 GLU PHE GLN ALA ALA ALA LEU ASP ILE MET GLN LYS TYR SEQRES 8 A 241 LYS LYS HIS ILE ASN GLU THR HIS ILE PRO PHE LEU GLU SEQRES 9 A 241 GLU LEU ILE VAL THR LYS SER TRP TRP ASP SER VAL ASP SEQRES 10 A 241 SER ILE VAL PRO THR PHE LEU GLY ASP ILE PHE LEU LYS SEQRES 11 A 241 HIS PRO GLU LEU ILE SER ALA TYR ILE PRO LYS TRP ILE SEQRES 12 A 241 ALA SER ASP ASN ILE TRP LEU GLN ARG ALA ALA ILE LEU SEQRES 13 A 241 PHE GLN LEU LYS TYR LYS GLN LYS MET ASP GLU GLU LEU SEQRES 14 A 241 LEU PHE TRP ILE ILE GLY GLN LEU HIS SER SER LYS GLU SEQRES 15 A 241 PHE PHE ILE GLN LYS ALA ILE GLY TRP VAL LEU ARG GLU SEQRES 16 A 241 TYR ALA LYS THR ASN PRO ASP VAL VAL TRP GLU TYR VAL SEQRES 17 A 241 GLN ASN ASN GLU LEU ALA PRO LEU SER LYS ARG GLU ALA SEQRES 18 A 241 ILE LYS HIS ILE LYS GLN ASN TYR GLY ILE ASN ASN GLU SEQRES 19 A 241 LYS ILE GLY GLU THR LEU SER SEQRES 1 B 9 DA DA DG DC DA DZM DA DC DC SEQRES 1 C 9 DT DG DG DT DT DT DG DC DT HET DZM B 6 22 HETNAM DZM 3-DEAZA-3-METHYLADENINE HETSYN DZM 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO- HETSYN 2 DZM PENTOFURANOSYL)-7-METHYL-1H-IMIDAZO[4,5-C]PYRIDIN-4- HETSYN 3 DZM AMINE FORMUL 2 DZM C12 H17 N4 O6 P FORMUL 4 HOH *253(H2 O) HELIX 1 AA1 HIS A 2 HIS A 15 1 14 HELIX 2 AA2 ASN A 17 MET A 28 1 12 HELIX 3 AA3 GLN A 38 GLN A 51 1 14 HELIX 4 AA4 ASP A 57 LYS A 59 5 3 HELIX 5 AA5 ASP A 60 ASP A 70 1 11 HELIX 6 AA6 GLU A 73 TYR A 87 1 15 HELIX 7 AA7 LYS A 88 ILE A 91 5 4 HELIX 8 AA8 ASN A 92 THR A 94 5 3 HELIX 9 AA9 HIS A 95 THR A 105 1 11 HELIX 10 AB1 TRP A 108 VAL A 116 1 9 HELIX 11 AB2 THR A 118 HIS A 127 1 10 HELIX 12 AB3 PRO A 128 ALA A 133 5 6 HELIX 13 AB4 TYR A 134 SER A 141 1 8 HELIX 14 AB5 ASN A 143 PHE A 153 1 11 HELIX 15 AB6 TYR A 157 MET A 161 5 5 HELIX 16 AB7 ASP A 162 HIS A 174 1 13 HELIX 17 AB8 GLU A 178 LYS A 194 1 17 HELIX 18 AB9 ASN A 196 ASN A 207 1 12 HELIX 19 AC1 ALA A 210 LYS A 219 1 10 HELIX 20 AC2 ILE A 221 TYR A 225 5 5 LINK O3' DA B 5 P DZM B 6 1555 1555 1.60 LINK O3' DZM B 6 P DA B 7 1555 1555 1.61 CRYST1 127.439 55.405 47.969 90.00 105.70 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007847 0.000000 0.002206 0.00000 SCALE2 0.000000 0.018049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021655 0.00000 MASTER 436 0 1 20 0 0 0 6 0 0 0 21 END