HEADER HYDROLASE 24-JUN-15 5C7T TITLE CRYSTAL STRUCTURE OF THE BDELLOVIBRIO BACTERIOVORUS NUCLEOSIDE TITLE 2 DIPHOSPHATE SUGAR HYDROLASE IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUDF PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.13; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS; SOURCE 3 ORGANISM_TAXID: 264462; SOURCE 4 STRAIN: ATCC 15356 / DSM 50701 / NCIB 9529 / HD100; SOURCE 5 GENE: NUDF, BD3179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS NUDIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.B.GABELLI,A.H.DE LA PENA,A.SUAREZ,L.M.AMZEL REVDAT 1 20-JAN-16 5C7T 0 JRNL AUTH A.H.DE LA PENA,A.SUAREZ,K.C.DUONG-LY,A.J.SCHOEFFIELD, JRNL AUTH 2 M.A.PIZARRO-DUPUY,M.ZARR,S.A.PINEIRO,L.M.AMZEL,S.B.GABELLI JRNL TITL STRUCTURAL AND ENZYMATIC CHARACTERIZATION OF A NUCLEOSIDE JRNL TITL 2 DIPHOSPHATE SUGAR HYDROLASE FROM BDELLOVIBRIO BACTERIOVORUS. JRNL REF PLOS ONE V. 10 41716 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26524597 JRNL DOI 10.1371/JOURNAL.PONE.0141716 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 23061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1224 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 169 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.494 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3212 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3074 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4337 ; 1.886 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7082 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 6.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;32.768 ;24.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;14.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3427 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 723 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1447 ; 2.204 ; 2.692 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1446 ; 2.202 ; 2.691 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1807 ; 3.180 ; 4.019 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5C7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000211187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24431 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0049 REMARK 200 STARTING MODEL: 5C7Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.75-2.0 M AMMONIUM SULFATE, 0.1 M REMARK 280 HEPES PH 7.0, AND 0-0.5% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.79700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.70100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.79700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.70100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASN B 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 119 O3D APR B 203 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 19 -38.56 -136.59 REMARK 500 VAL A 113 64.91 -153.30 REMARK 500 TYR A 116 26.59 -154.73 REMARK 500 ASP A 128 71.35 63.20 REMARK 500 LEU A 132 -122.83 -128.46 REMARK 500 ASP A 163 109.42 -59.99 REMARK 500 ASN B 82 27.91 46.56 REMARK 500 VAL B 113 66.85 -151.69 REMARK 500 TYR B 116 19.62 -152.38 REMARK 500 ASP B 128 70.10 64.05 REMARK 500 LEU B 132 -134.38 -97.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 415 DISTANCE = 6.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C7Q RELATED DB: PDB REMARK 900 5C7Q CONTAINS THE SAME PROTEIN WITHOUT ADPR DBREF 5C7T A 1 182 UNP Q6MIH8 Q6MIH8_BDEBA 1 182 DBREF 5C7T B 1 182 UNP Q6MIH8 Q6MIH8_BDEBA 1 182 SEQADV 5C7T GLN A 140 UNP Q6MIH8 GLU 140 ENGINEERED MUTATION SEQADV 5C7T GLN B 140 UNP Q6MIH8 GLU 140 ENGINEERED MUTATION SEQRES 1 A 182 MET LYS HIS LEU GLU GLU LYS THR LEU SER THR ARG GLN SEQRES 2 A 182 ILE PHE LYS GLY ARG TYR LEU LYS ILE GLU GLN ASP GLN SEQRES 3 A 182 VAL GLN ALA PRO ASP GLY ARG THR TYR THR ARG GLU TYR SEQRES 4 A 182 ILE LEU HIS PRO GLY ALA ALA MET MET ILE PRO LEU LEU SEQRES 5 A 182 PRO ASN GLY ASN VAL VAL MET ILE HIS GLN TYR ARG HIS SEQRES 6 A 182 ALA VAL LYS LYS VAL PHE LEU GLU PHE PRO ALA GLY LYS SEQRES 7 A 182 ARG ASP HIS ASN GLU GLU THR LEU LEU THR ALA LYS ARG SEQRES 8 A 182 GLU LEU LEU GLU GLU THR GLY TYR GLU ALA LYS ASP TRP SEQRES 9 A 182 LYS PHE LEU THR THR ILE HIS PRO VAL ILE GLY TYR SER SEQRES 10 A 182 ASN GLU HIS ILE ASP LEU TYR LEU ALA ARG ASP LEU THR SEQRES 11 A 182 HIS LEU GLU GLN ARG LEU ASP GLN GLY GLN PHE ILE GLU SEQRES 12 A 182 VAL VAL GLU VAL LYS PRO ALA ASP LEU MET GLN LEU VAL SEQRES 13 A 182 LEU GLU GLY LYS VAL SER ASP VAL LYS THR GLN ILE GLY SEQRES 14 A 182 ALA PHE TRP LEU ASP LYS PHE LEU ARG GLY GLU TRP ASN SEQRES 1 B 182 MET LYS HIS LEU GLU GLU LYS THR LEU SER THR ARG GLN SEQRES 2 B 182 ILE PHE LYS GLY ARG TYR LEU LYS ILE GLU GLN ASP GLN SEQRES 3 B 182 VAL GLN ALA PRO ASP GLY ARG THR TYR THR ARG GLU TYR SEQRES 4 B 182 ILE LEU HIS PRO GLY ALA ALA MET MET ILE PRO LEU LEU SEQRES 5 B 182 PRO ASN GLY ASN VAL VAL MET ILE HIS GLN TYR ARG HIS SEQRES 6 B 182 ALA VAL LYS LYS VAL PHE LEU GLU PHE PRO ALA GLY LYS SEQRES 7 B 182 ARG ASP HIS ASN GLU GLU THR LEU LEU THR ALA LYS ARG SEQRES 8 B 182 GLU LEU LEU GLU GLU THR GLY TYR GLU ALA LYS ASP TRP SEQRES 9 B 182 LYS PHE LEU THR THR ILE HIS PRO VAL ILE GLY TYR SER SEQRES 10 B 182 ASN GLU HIS ILE ASP LEU TYR LEU ALA ARG ASP LEU THR SEQRES 11 B 182 HIS LEU GLU GLN ARG LEU ASP GLN GLY GLN PHE ILE GLU SEQRES 12 B 182 VAL VAL GLU VAL LYS PRO ALA ASP LEU MET GLN LEU VAL SEQRES 13 B 182 LEU GLU GLY LYS VAL SER ASP VAL LYS THR GLN ILE GLY SEQRES 14 B 182 ALA PHE TRP LEU ASP LYS PHE LEU ARG GLY GLU TRP ASN HET APR A 201 36 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET PG0 A 208 8 HET SO4 A 209 5 HET SO4 A 210 5 HET SO4 B 201 5 HET PEG B 202 7 HET APR B 203 36 HET GOL B 204 6 HET GOL B 205 6 HET GOL B 206 6 HET GOL B 207 6 HET PGE B 208 10 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PG0 PEG 6000 FORMUL 3 APR 2(C15 H23 N5 O14 P2) FORMUL 4 SO4 6(O4 S 2-) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 10 PG0 C5 H12 O3 FORMUL 14 PEG C4 H10 O3 FORMUL 20 PGE C6 H14 O4 FORMUL 21 HOH *212(H2 O) HELIX 1 AA1 MET A 1 GLU A 5 5 5 HELIX 2 AA2 HIS A 65 LYS A 68 5 4 HELIX 3 AA3 GLU A 84 GLY A 98 1 15 HELIX 4 AA4 LYS A 148 GLU A 158 1 11 HELIX 5 AA5 ASP A 163 ARG A 178 1 16 HELIX 6 AA6 GLU B 84 GLY B 98 1 15 HELIX 7 AA7 LYS B 148 GLU B 158 1 11 HELIX 8 AA8 ASP B 163 ARG B 178 1 16 SHEET 1 AA1 3 LYS A 7 LYS A 16 0 SHEET 2 AA1 3 LYS A 21 GLN A 28 -1 O GLN A 26 N LEU A 9 SHEET 3 AA1 3 THR A 34 ILE A 40 -1 O TYR A 35 N VAL A 27 SHEET 1 AA2 4 ALA A 76 LYS A 78 0 SHEET 2 AA2 4 ALA A 45 LEU A 51 -1 N ALA A 46 O GLY A 77 SHEET 3 AA2 4 ILE A 121 HIS A 131 1 O ALA A 126 N LEU A 51 SHEET 4 AA2 4 TYR A 99 ILE A 110 -1 N LYS A 105 O LEU A 125 SHEET 1 AA3 3 LYS A 69 GLU A 73 0 SHEET 2 AA3 3 VAL A 57 ARG A 64 -1 N ILE A 60 O GLU A 73 SHEET 3 AA3 3 GLU A 143 VAL A 147 -1 O VAL A 145 N MET A 59 SHEET 1 AA4 3 LYS B 7 LYS B 16 0 SHEET 2 AA4 3 LYS B 21 GLN B 28 -1 O GLN B 26 N LEU B 9 SHEET 3 AA4 3 THR B 34 ILE B 40 -1 O ARG B 37 N ASP B 25 SHEET 1 AA5 4 ALA B 76 LYS B 78 0 SHEET 2 AA5 4 ALA B 45 PRO B 50 -1 N ALA B 46 O GLY B 77 SHEET 3 AA5 4 ILE B 121 HIS B 131 1 O ALA B 126 N ILE B 49 SHEET 4 AA5 4 TYR B 99 ILE B 110 -1 N ASP B 103 O ARG B 127 SHEET 1 AA6 3 LYS B 69 GLU B 73 0 SHEET 2 AA6 3 VAL B 57 ARG B 64 -1 N ILE B 60 O GLU B 73 SHEET 3 AA6 3 GLU B 143 VAL B 147 -1 O VAL B 145 N MET B 59 SITE 1 AC1 20 TYR A 19 ARG A 64 GLY A 77 LYS A 78 SITE 2 AC1 20 GLU A 119 GLY A 139 LYS A 165 HOH A 309 SITE 3 AC1 20 HOH A 321 HOH A 329 HOH A 330 HOH A 354 SITE 4 AC1 20 HOH A 381 HOH A 389 THR B 36 ARG B 37 SITE 5 AC1 20 GLU B 38 ILE B 114 GLY B 115 SO4 B 201 SITE 1 AC2 6 ARG A 18 TYR A 19 HOH A 311 TYR B 35 SITE 2 AC2 6 THR B 36 HOH B 320 SITE 1 AC3 5 ARG A 12 GLN A 26 ARG A 127 HOH A 334 SITE 2 AC3 5 PEG B 202 SITE 1 AC4 3 LYS A 90 HOH A 301 HOH A 343 SITE 1 AC5 7 ILE A 14 LEU A 51 ARG A 127 ASP A 128 SITE 2 AC5 7 HOH A 346 HOH A 353 HOH A 380 SITE 1 AC6 9 LYS A 69 VAL A 70 PHE A 71 GLY A 159 SITE 2 AC6 9 LYS A 160 VAL A 161 SER A 162 HOH A 314 SITE 3 AC6 9 HIS B 111 SITE 1 AC7 5 PRO A 149 ALA A 150 MET A 153 ASP A 174 SITE 2 AC7 5 HOH A 324 SITE 1 AC8 3 HIS A 61 VAL A 70 HOH A 355 SITE 1 AC9 6 THR A 34 TYR A 35 THR A 36 GLY A 179 SITE 2 AC9 6 ARG B 18 TYR B 19 SITE 1 AD1 7 ARG A 37 HOH A 347 HOH A 349 HOH A 371 SITE 2 AD1 7 TYR B 63 ARG B 64 APR B 203 SITE 1 AD2 7 TYR A 63 ARG A 64 APR A 201 ARG B 37 SITE 2 AD2 7 GLY B 115 HOH B 317 HOH B 331 SITE 1 AD3 8 GLN A 26 THR A 36 PHE A 176 LEU A 177 SITE 2 AD3 8 ASN A 182 SO4 A 203 HOH A 315 ARG B 18 SITE 1 AD4 23 THR A 36 ARG A 37 GLU A 38 ILE A 114 SITE 2 AD4 23 GLY A 115 TYR A 116 SO4 A 210 HOH A 347 SITE 3 AD4 23 TYR B 19 ARG B 64 ALA B 76 GLY B 77 SITE 4 AD4 23 LYS B 78 GLU B 119 GLN B 138 GLY B 139 SITE 5 AD4 23 GLN B 140 LYS B 165 GOL B 204 HOH B 330 SITE 6 AD4 23 HOH B 349 HOH B 353 HOH B 371 SITE 1 AD5 6 LYS B 78 ASP B 80 ARG B 91 GLU B 92 SITE 2 AD5 6 APR B 203 HOH B 338 SITE 1 AD6 9 LYS B 69 VAL B 70 PHE B 71 LEU B 72 SITE 2 AD6 9 GLY B 159 LYS B 160 SER B 162 PGE B 208 SITE 3 AD6 9 HOH B 343 SITE 1 AD7 4 ARG A 18 HIS B 131 HOH B 319 HOH B 358 SITE 1 AD8 3 ASN B 56 GLU B 146 LYS B 148 SITE 1 AD9 4 HIS B 61 LYS B 160 GOL B 205 HOH B 321 CRYST1 75.594 103.402 51.623 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019371 0.00000 MASTER 377 0 18 8 20 0 40 6 0 0 0 28 END