HEADER LYASE 04-JUN-15 5BUX TITLE CRYSTAL STRUCTURE OF 3-HYDROXYACYL-ACP DEHYDRATASE (FABZ) FROM TITLE 2 YERSINIA PESTIS WITH GLYCEROL BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE FABZ; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: (3R)-HYDROXYMYRISTOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE, COMPND 5 (3R)-HYDROXYMYRISTOYL-ACP DEHYDRASE, BETA-HYDROXYACYL-ACP COMPND 6 DEHYDRATASE; COMPND 7 EC: 4.2.1.59; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS KIM10+; SOURCE 3 ORGANISM_TAXID: 187410; SOURCE 4 STRAIN: KIM10+; SOURCE 5 GENE: FABZ, YPA_0531; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS FABZ, ANTIMICROBIAL TARGET, HOT-DOG FOLD, FATTY ACID SYNTHESIS, KEYWDS 2 TRIMER OF DIMERS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MCGILLICK,D.KUMARAN,S.SWAMINATHAN REVDAT 1 08-JUN-16 5BUX 0 JRNL AUTH B.MCGILLICK,D.KUMARAN,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF 3-HYDROXYACYL-ACP DEHYDRATASE (FABZ) JRNL TITL 2 FROM YERSINIA PESTIS WITH GLYCEROL BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 40206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2349 ; 0.029 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2306 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3157 ; 2.364 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5302 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 7.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.055 ;22.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;15.633 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.395 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2587 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5BUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.07800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE, PH 8.0, 400 MM SODIUM REMARK 280 THIOCYANATE, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.98050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.98050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.98050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 52.38000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 90.72482 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -52.38000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 90.72482 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 SER A 148 REMARK 465 LYS A 149 REMARK 465 PRO A 150 REMARK 465 ALA A 151 REMARK 465 ALA A 152 REMARK 465 PRO A 153 REMARK 465 ALA A 154 REMARK 465 GLU A 155 REMARK 465 SER A 156 REMARK 465 VAL A 157 REMARK 465 VAL A 158 REMARK 465 VAL A 159 REMARK 465 LYS A 160 REMARK 465 PRO A 161 REMARK 465 ASP A 162 REMARK 465 VAL A 163 REMARK 465 VAL A 164 REMARK 465 LYS A 165 REMARK 465 PRO A 166 REMARK 465 ASP A 167 REMARK 465 VAL A 168 REMARK 465 VAL A 169 REMARK 465 ASN A 170 REMARK 465 PRO A 171 REMARK 465 VAL A 172 REMARK 465 VAL A 173 REMARK 465 LYS A 174 REMARK 465 GLU A 175 REMARK 465 SER A 176 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 ASP B 4 REMARK 465 SER B 148 REMARK 465 LYS B 149 REMARK 465 PRO B 150 REMARK 465 ALA B 151 REMARK 465 ALA B 152 REMARK 465 PRO B 153 REMARK 465 ALA B 154 REMARK 465 GLU B 155 REMARK 465 SER B 156 REMARK 465 VAL B 157 REMARK 465 VAL B 158 REMARK 465 VAL B 159 REMARK 465 LYS B 160 REMARK 465 PRO B 161 REMARK 465 ASP B 162 REMARK 465 VAL B 163 REMARK 465 VAL B 164 REMARK 465 LYS B 165 REMARK 465 PRO B 166 REMARK 465 ASP B 167 REMARK 465 VAL B 168 REMARK 465 VAL B 169 REMARK 465 ASN B 170 REMARK 465 PRO B 171 REMARK 465 VAL B 172 REMARK 465 VAL B 173 REMARK 465 LYS B 174 REMARK 465 GLU B 175 REMARK 465 SER B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 34 CD GLU A 34 OE1 0.095 REMARK 500 GLU A 116 CD GLU A 116 OE1 -0.067 REMARK 500 GLU B 116 CD GLU B 116 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 31 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 GLU A 34 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 90 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 109 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP B 31 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 100 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 22 40.32 -104.40 REMARK 500 LYS A 36 -68.11 -128.15 REMARK 500 ASN A 47 34.99 -79.19 REMARK 500 LYS A 58 83.51 -152.97 REMARK 500 VAL A 118 -63.70 -103.53 REMARK 500 HIS B 6 79.52 -101.24 REMARK 500 PRO B 22 40.72 -101.67 REMARK 500 LYS B 36 -65.50 -125.67 REMARK 500 ASN B 47 32.13 -76.79 REMARK 500 LYS B 58 82.84 -153.54 REMARK 500 VAL B 118 -60.85 -108.78 REMARK 500 ARG B 121 119.71 -162.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 202 DBREF 5BUX A 1 176 UNP Q1CAM3 FABZ_YERPA 1 176 DBREF 5BUX B 1 176 UNP Q1CAM3 FABZ_YERPA 1 176 SEQADV 5BUX HIS A -14 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS A -13 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS A -12 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS A -11 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS A -10 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS A -9 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX SER A -8 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX SER A -7 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX GLY A -6 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX LEU A -5 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX VAL A -4 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX PRO A -3 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX ARG A -2 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX GLY A -1 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX SER A 0 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS B -14 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS B -13 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS B -12 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS B -11 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS B -10 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX HIS B -9 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX SER B -8 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX SER B -7 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX GLY B -6 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX LEU B -5 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX VAL B -4 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX PRO B -3 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX ARG B -2 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX GLY B -1 UNP Q1CAM3 EXPRESSION TAG SEQADV 5BUX SER B 0 UNP Q1CAM3 EXPRESSION TAG SEQRES 1 A 191 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 191 GLY SER MET THR THR ASP THR HIS THR LEU HIS ILE GLU SEQRES 3 A 191 GLU ILE LEU ASP LEU LEU PRO HIS ARG PHE PRO PHE LEU SEQRES 4 A 191 LEU VAL ASP ARG VAL LEU ASP PHE GLU GLU GLY LYS PHE SEQRES 5 A 191 LEU ARG ALA VAL LYS ASN VAL SER PHE ASN GLU PRO PHE SEQRES 6 A 191 PHE GLN GLY HIS PHE PRO GLY LYS PRO ILE PHE PRO GLY SEQRES 7 A 191 VAL LEU ILE LEU GLU ALA MET ALA GLN ALA THR GLY ILE SEQRES 8 A 191 LEU ALA PHE LYS SER ARG GLY LYS LEU GLU PRO GLY GLU SEQRES 9 A 191 LEU TYR TYR PHE ALA GLY ILE ASP GLU ALA ARG PHE LYS SEQRES 10 A 191 ARG PRO VAL VAL PRO GLY ASP GLN MET ILE MET GLU VAL SEQRES 11 A 191 GLU PHE VAL LYS GLU ARG ARG GLY LEU THR ARG PHE THR SEQRES 12 A 191 GLY VAL ALA LYS VAL ASP GLY GLU ILE VAL CYS THR ALA SEQRES 13 A 191 THR MET MET CYS ALA ARG SER LYS PRO ALA ALA PRO ALA SEQRES 14 A 191 GLU SER VAL VAL VAL LYS PRO ASP VAL VAL LYS PRO ASP SEQRES 15 A 191 VAL VAL ASN PRO VAL VAL LYS GLU SER SEQRES 1 B 191 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 191 GLY SER MET THR THR ASP THR HIS THR LEU HIS ILE GLU SEQRES 3 B 191 GLU ILE LEU ASP LEU LEU PRO HIS ARG PHE PRO PHE LEU SEQRES 4 B 191 LEU VAL ASP ARG VAL LEU ASP PHE GLU GLU GLY LYS PHE SEQRES 5 B 191 LEU ARG ALA VAL LYS ASN VAL SER PHE ASN GLU PRO PHE SEQRES 6 B 191 PHE GLN GLY HIS PHE PRO GLY LYS PRO ILE PHE PRO GLY SEQRES 7 B 191 VAL LEU ILE LEU GLU ALA MET ALA GLN ALA THR GLY ILE SEQRES 8 B 191 LEU ALA PHE LYS SER ARG GLY LYS LEU GLU PRO GLY GLU SEQRES 9 B 191 LEU TYR TYR PHE ALA GLY ILE ASP GLU ALA ARG PHE LYS SEQRES 10 B 191 ARG PRO VAL VAL PRO GLY ASP GLN MET ILE MET GLU VAL SEQRES 11 B 191 GLU PHE VAL LYS GLU ARG ARG GLY LEU THR ARG PHE THR SEQRES 12 B 191 GLY VAL ALA LYS VAL ASP GLY GLU ILE VAL CYS THR ALA SEQRES 13 B 191 THR MET MET CYS ALA ARG SER LYS PRO ALA ALA PRO ALA SEQRES 14 B 191 GLU SER VAL VAL VAL LYS PRO ASP VAL VAL LYS PRO ASP SEQRES 15 B 191 VAL VAL ASN PRO VAL VAL LYS GLU SER HET GOL A 201 6 HET GOL A 202 6 HET SCN A 203 3 HET SCN B 201 3 HET SCN B 202 3 HETNAM GOL GLYCEROL HETNAM SCN THIOCYANATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 SCN 3(C N S 1-) FORMUL 8 HOH *205(H2 O) HELIX 1 AA1 HIS A 9 LEU A 17 1 9 HELIX 2 AA2 GLU A 48 HIS A 54 5 7 HELIX 3 AA3 PRO A 62 GLY A 83 1 22 HELIX 4 AA4 HIS B 9 LEU B 17 1 9 HELIX 5 AA5 GLU B 48 HIS B 54 5 7 HELIX 6 AA6 PRO B 62 GLY B 83 1 22 SHEET 1 AA112 ARG A 28 GLU A 33 0 SHEET 2 AA112 PHE A 37 ASN A 43 -1 O ARG A 39 N ASP A 31 SHEET 3 AA112 GLN A 110 ARG A 121 -1 O MET A 113 N ALA A 40 SHEET 4 AA112 LEU A 124 VAL A 133 -1 O LYS A 132 N ILE A 112 SHEET 5 AA112 GLU A 136 ALA A 146 -1 O CYS A 145 N THR A 125 SHEET 6 AA112 TYR A 92 PHE A 101 -1 N TYR A 92 O ALA A 146 SHEET 7 AA112 TYR B 92 PHE B 101 -1 O ALA B 94 N PHE A 101 SHEET 8 AA112 GLU B 136 ALA B 146 -1 O THR B 142 N ASP B 97 SHEET 9 AA112 LEU B 124 VAL B 133 -1 N THR B 125 O CYS B 145 SHEET 10 AA112 GLN B 110 ARG B 121 -1 N GLU B 114 O VAL B 130 SHEET 11 AA112 PHE B 37 ASN B 43 -1 N ALA B 40 O MET B 113 SHEET 12 AA112 ARG B 28 GLU B 33 -1 N ASP B 31 O ARG B 39 CISPEP 1 PHE A 21 PRO A 22 0 6.97 CISPEP 2 HIS A 54 PHE A 55 0 -0.64 CISPEP 3 PHE B 21 PRO B 22 0 2.54 CISPEP 4 HIS B 54 PHE B 55 0 -3.12 SITE 1 AC1 6 HIS A 19 GLU A 68 HOH A 309 HOH A 317 SITE 2 AC1 6 HOH A 386 HIS B 54 SITE 1 AC2 6 HIS A 54 GLY A 63 HOH A 326 HIS B 19 SITE 2 AC2 6 GLU B 68 HOH B 324 SITE 1 AC3 5 ARG A 82 GLY B 35 ALA B 78 PHE B 127 SITE 2 AC3 5 HOH B 306 SITE 1 AC4 5 GLY A 35 ALA A 78 PHE A 127 ARG B 82 SITE 2 AC4 5 HOH B 307 SITE 1 AC5 3 PRO A 49 PRO B 49 HOH B 362 CRYST1 104.760 104.760 87.961 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009546 0.005511 0.000000 0.00000 SCALE2 0.000000 0.011022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011369 0.00000 MASTER 459 0 5 6 12 0 9 6 0 0 0 30 END