HEADER ELECTRON TRANSPORT 03-JUL-15 5AWI TITLE DOMAIN-SWAPPED CYTOCHROME CB562 DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 23-128; COMPND 5 SYNONYM: CYTOCHROME B-562; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CYBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JCB387 KEYWDS ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAMOTO,M.KURIBAYASHI,S.NAGAO,Y.SHOMURA,Y.HIGUCHI,S.HIROTA REVDAT 2 02-OCT-19 5AWI 1 COMPND SOURCE REMARK HET REVDAT 2 2 1 HETNAM HETSYN FORMUL LINK REVDAT 2 3 1 SITE ATOM REVDAT 1 21-OCT-15 5AWI 0 JRNL AUTH T.MIYAMOTO,M.KURIBAYASHI,S.NAGAO,Y.SHOMURA,Y.HIGUCHI, JRNL AUTH 2 S.HIROTA JRNL TITL DOMAIN-SWAPPED CYTOCHROME CB562 DIMER AND ITS NANOCAGE JRNL TITL 2 ENCAPSULATING A ZN-SO4 CLUSTER IN THE INTERNAL CAVITY JRNL REF CHEM SCI 2015 JRNL REFN ESSN 2041-6539 JRNL DOI 10.1039/C5SC02428E REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1697 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.62000 REMARK 3 B22 (A**2) : 21.13000 REMARK 3 B33 (A**2) : -15.50000 REMARK 3 B12 (A**2) : 20.61000 REMARK 3 B13 (A**2) : -7.05000 REMARK 3 B23 (A**2) : -12.38000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1785 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1676 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2396 ; 1.176 ; 2.052 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3858 ; 0.928 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 210 ; 4.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;42.626 ;27.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;14.585 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2004 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 346 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 846 ; 0.823 ; 2.031 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 845 ; 0.820 ; 2.030 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 1.363 ; 3.042 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1055 ; 1.364 ; 3.042 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 929 ; 1.093 ; 2.038 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 907 ; 0.889 ; 2.031 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1324 ; 1.409 ; 2.988 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2058 ; 3.323 ;15.504 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2045 ; 3.319 ;15.404 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 106 B 1 106 5482 0.11 0.05 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.501 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : L, -K, H REMARK 3 TWIN FRACTION : 0.499 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 52 REMARK 3 RESIDUE RANGE : B 53 B 106 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4960 25.0590 27.1940 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.0869 REMARK 3 T33: 0.1416 T12: 0.0221 REMARK 3 T13: 0.0077 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.0697 L22: 0.7237 REMARK 3 L33: 1.6632 L12: -0.1282 REMARK 3 L13: 0.0738 L23: 0.0904 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: -0.1666 S13: -0.0112 REMARK 3 S21: 0.1984 S22: 0.0646 S23: -0.0875 REMARK 3 S31: 0.0583 S32: -0.0122 S33: -0.0441 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 52 REMARK 3 RESIDUE RANGE : A 53 A 106 REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5600 30.6070 -4.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.2232 REMARK 3 T33: 0.1796 T12: 0.0414 REMARK 3 T13: 0.0394 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 1.3125 L22: 1.2277 REMARK 3 L33: 2.0646 L12: -0.9492 REMARK 3 L13: 0.0605 L23: -0.1626 REMARK 3 S TENSOR REMARK 3 S11: 0.2146 S12: 0.4357 S13: 0.1526 REMARK 3 S21: -0.2430 S22: -0.2934 S23: -0.1260 REMARK 3 S31: -0.0273 S32: 0.0827 S33: 0.0788 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9710 33.5480 13.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.1935 REMARK 3 T33: 0.1154 T12: -0.0140 REMARK 3 T13: -0.0202 T23: -0.1071 REMARK 3 L TENSOR REMARK 3 L11: 0.0451 L22: 0.0233 REMARK 3 L33: 0.0427 L12: 0.0212 REMARK 3 L13: 0.0263 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0792 S13: -0.0593 REMARK 3 S21: -0.0215 S22: 0.0210 S23: -0.0248 REMARK 3 S31: 0.0319 S32: 0.0564 S33: -0.0223 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 202 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): -11.853 32.235 7.888 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.2037 REMARK 3 T33: 0.0854 T12: -0.0302 REMARK 3 T13: 0.0490 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 2.2040 L22: 2.1429 REMARK 3 L33: 7.3409 L12: -1.7102 REMARK 3 L13: 4.0001 L23: -3.3607 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: -0.0672 S13: -0.0063 REMARK 3 S21: 0.1511 S22: 0.1080 S23: 0.0731 REMARK 3 S31: -0.1674 S32: -0.1447 S33: -0.0302 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 203 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): -1.190 33.659 9.198 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.0808 REMARK 3 T33: 0.0811 T12: -0.0556 REMARK 3 T13: -0.0171 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 3.8753 L22: 2.0280 REMARK 3 L33: 5.3796 L12: 0.5257 REMARK 3 L13: -0.2650 L23: 3.2023 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.0561 S13: -0.0375 REMARK 3 S21: 0.1391 S22: -0.0347 S23: 0.0536 REMARK 3 S31: 0.2277 S32: -0.0294 S33: 0.0920 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): -9.632 36.792 17.882 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.0885 REMARK 3 T33: 0.3512 T12: -0.0248 REMARK 3 T13: -0.0099 T23: 0.1154 REMARK 3 L TENSOR REMARK 3 L11: 0.0598 L22: 0.3861 REMARK 3 L33: 1.0109 L12: -0.0849 REMARK 3 L13: -0.1819 L23: 0.6059 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.0363 S13: -0.0909 REMARK 3 S21: 0.0022 S22: -0.0218 S23: -0.0990 REMARK 3 S31: -0.0031 S32: -0.0026 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): -5.051 33.787 13.722 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: 0.1491 REMARK 3 T33: 0.4057 T12: -0.1092 REMARK 3 T13: -0.1828 T23: 0.1880 REMARK 3 L TENSOR REMARK 3 L11: 0.4101 L22: 0.7860 REMARK 3 L33: 1.8187 L12: -0.5596 REMARK 3 L13: -0.8632 L23: 1.1838 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.0053 S13: 0.0244 REMARK 3 S21: -0.0789 S22: 0.0323 S23: 0.0560 REMARK 3 S31: -0.0463 S32: 0.0026 S33: -0.0377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5AWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1300000023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.40 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 69.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG MME 350, 6 MM ZNSO4, 750 MM REMARK 280 MES BUFFER, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.30400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.30400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.30400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.30400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.30400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.30400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 47.30400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 47.30400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 47.30400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 47.30400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 47.30400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 47.30400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 47.30400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 47.30400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 47.30400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 47.30400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 47.30400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 47.30400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 204 LIES ON A SPECIAL POSITION. REMARK 375 O3 SO4 B 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 98 CAB HEC A 208 1.90 REMARK 500 SG CYS B 101 CAC HEC A 208 1.90 REMARK 500 SG CYS A 101 CAC HEC A 201 1.90 REMARK 500 SG CYS A 98 CAB HEC A 201 1.90 REMARK 500 OE2 GLU B 4 O HOH B 301 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 N REMARK 620 2 ALA A 1 O 66.6 REMARK 620 3 ASP A 39 OD2 118.1 81.2 REMARK 620 4 ASP A 12 OD2 58.5 60.3 59.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 2 OD2 REMARK 620 2 SO4 A 207 O4 102.5 REMARK 620 3 GLU B 8 OE1 84.7 18.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD2 REMARK 620 2 SO4 A 206 O1 105.1 REMARK 620 3 SO4 A 207 O3 102.2 111.4 REMARK 620 4 SO4 A 206 O2 101.3 121.3 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 208 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 SD REMARK 620 2 HEC A 208 NA 90.1 REMARK 620 3 HEC A 208 NB 87.2 89.8 REMARK 620 4 HEC A 208 NC 90.2 178.8 89.1 REMARK 620 5 HEC A 208 ND 92.6 90.8 179.4 90.3 REMARK 620 6 HIS B 102 NE2 173.9 88.6 86.8 91.0 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 GLU A 8 OE2 55.3 REMARK 620 3 SO4 A 206 O4 112.8 101.1 REMARK 620 4 ASP B 2 OD2 106.1 143.5 53.9 REMARK 620 5 GLU B 4 OE1 115.4 140.3 42.9 13.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HEC A 201 NA 88.0 REMARK 620 3 HEC A 201 NB 87.9 90.2 REMARK 620 4 HEC A 201 NC 91.5 178.6 88.4 REMARK 620 5 HEC A 201 ND 91.6 90.5 179.1 90.9 REMARK 620 6 MET B 7 SD 176.0 90.9 88.3 89.5 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 4 OE1 REMARK 620 2 ASP B 5 OD1 84.6 REMARK 620 3 ASP A 5 OD1 98.0 97.3 REMARK 620 4 SO4 A 206 O3 118.8 95.3 21.1 REMARK 620 5 SO4 A 207 O3 104.6 82.8 16.6 18.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 5 OD2 REMARK 620 2 SO4 A 207 O2 104.0 REMARK 620 3 SO4 B 204 O1 96.6 112.6 REMARK 620 4 SO4 A 206 S 158.0 70.2 68.0 REMARK 620 5 SO4 A 206 O3 145.6 60.5 66.7 13.9 REMARK 620 6 SO4 B 204 O2 97.0 112.7 0.5 67.6 66.5 REMARK 620 7 SO4 B 204 O4 96.9 112.6 0.4 67.6 66.5 0.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BC5 RELATED DB: PDB DBREF 5AWI A 1 106 UNP P0ABE7 C562_ECOLX 23 128 DBREF 5AWI B 1 106 UNP P0ABE7 C562_ECOLX 23 128 SEQADV 5AWI CYS A 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 5AWI CYS A 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQADV 5AWI CYS B 98 UNP P0ABE7 ARG 120 ENGINEERED MUTATION SEQADV 5AWI CYS B 101 UNP P0ABE7 TYR 123 ENGINEERED MUTATION SEQRES 1 A 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 A 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 A 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 A 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 A 106 PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE SEQRES 6 A 106 ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 A 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 A 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 A 106 TYR ARG SEQRES 1 B 106 ALA ASP LEU GLU ASP ASN MET GLU THR LEU ASN ASP ASN SEQRES 2 B 106 LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL SEQRES 3 B 106 LYS ASP ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP SEQRES 4 B 106 ALA GLN LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER SEQRES 5 B 106 PRO ASP SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE SEQRES 6 B 106 ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU SEQRES 7 B 106 ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA SEQRES 8 B 106 GLU GLN LEU LYS THR THR CYS ASN ALA CYS HIS GLN LYS SEQRES 9 B 106 TYR ARG HET HEC A 201 43 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET SO4 A 206 5 HET SO4 A 207 5 HET HEC A 208 43 HET ZN B 201 1 HET ZN B 202 1 HET ZN B 203 1 HET SO4 B 204 5 HETNAM HEC HEME C HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 ZN 7(ZN 2+) FORMUL 8 SO4 3(O4 S 2-) FORMUL 15 HOH *61(H2 O) HELIX 1 AA1 ASP A 2 LYS A 19 1 18 HELIX 2 AA2 ASN A 22 LYS A 42 1 21 HELIX 3 AA3 PRO A 45 SER A 52 5 8 HELIX 4 AA4 SER A 55 GLY A 82 1 28 HELIX 5 AA5 LYS A 83 GLN A 93 1 11 HELIX 6 AA6 GLN A 93 ARG A 106 1 14 HELIX 7 AA7 ASP B 2 ALA B 20 1 19 HELIX 8 AA8 ASN B 22 LYS B 42 1 21 HELIX 9 AA9 PRO B 45 GLU B 49 5 5 HELIX 10 AB1 SER B 55 GLY B 82 1 28 HELIX 11 AB2 LYS B 83 GLN B 93 1 11 HELIX 12 AB3 GLN B 93 ARG B 106 1 14 LINK N ALA A 1 ZN ZN A 205 1555 1555 2.63 LINK O ALA A 1 ZN ZN A 205 1555 1555 2.52 LINK OD2 ASP A 2 ZN ZN A 204 1555 1555 1.96 LINK OD2 ASP A 5 ZN ZN A 202 1555 1555 1.85 LINK SD MET A 7 FE HEC A 208 1555 1555 2.35 LINK OE1 GLU A 8 ZN ZN A 203 1555 1555 1.83 LINK OE2 GLU A 8 ZN ZN A 203 1555 1555 2.57 LINK OD2 ASP A 39 ZN ZN A 205 1555 1555 2.19 LINK NE2 HIS A 102 FE HEC A 201 1555 1555 2.23 LINK O ALA B 1 ZN ZN B 203 1555 1555 2.47 LINK OE1 GLU B 4 ZN ZN B 202 1555 1555 2.58 LINK OD1 ASP B 5 ZN ZN B 202 1555 1555 2.09 LINK OD2 ASP B 5 ZN ZN B 201 1555 1555 1.87 LINK SD MET B 7 FE HEC A 201 1555 1555 2.26 LINK NE2 HIS B 102 FE HEC A 208 1555 1555 2.12 LINK ZN ZN A 202 O1 SO4 A 206 1555 1555 2.03 LINK ZN ZN A 202 O3 SO4 A 207 1555 1555 2.14 LINK ZN ZN A 203 O4 SO4 A 206 1555 1555 2.15 LINK ZN ZN A 204 O4 SO4 A 207 1555 1555 1.85 LINK O2 SO4 A 207 ZN ZN B 201 1555 1555 2.00 LINK ZN ZN B 201 O1 SO4 B 204 1555 1555 2.02 LINK OD1 ASP A 5 ZN ZN B 202 1555 8555 2.06 LINK OD2 ASP A 12 ZN ZN A 205 1555 8555 2.50 LINK OD2 ASP B 2 ZN ZN A 203 1555 11455 1.88 LINK OE1 GLU B 4 ZN ZN A 203 1555 11455 2.20 LINK OE1 GLU B 8 ZN ZN A 204 1555 11455 1.97 LINK ZN ZN A 202 O2 SO4 A 206 1555 11455 1.80 LINK S SO4 A 206 ZN ZN B 201 1555 8555 2.94 LINK O3 SO4 A 206 ZN ZN B 202 1555 8555 2.11 LINK O3 SO4 A 206 ZN ZN B 201 1555 8555 1.98 LINK O3 SO4 A 207 ZN ZN B 202 1555 8555 2.10 LINK ZN ZN B 201 O2 SO4 B 204 1555 8555 2.02 LINK ZN ZN B 201 O4 SO4 B 204 1555 11455 2.02 SITE 1 AC1 18 GLU A 4 PHE A 61 PHE A 65 CYS A 98 SITE 2 AC1 18 CYS A 101 HIS A 102 TYR A 105 ARG A 106 SITE 3 AC1 18 HEC A 208 HOH A 301 HOH A 322 GLU B 4 SITE 4 AC1 18 MET B 7 GLU B 8 ASN B 11 MET B 33 SITE 5 AC1 18 PRO B 45 PRO B 46 SITE 1 AC2 5 ASP A 5 SO4 A 206 SO4 A 207 ZN B 202 SITE 2 AC2 5 SO4 B 204 SITE 1 AC3 5 GLU A 8 SO4 A 206 ASP B 2 GLU B 4 SITE 2 AC3 5 ZN B 202 SITE 1 AC4 6 ASP A 2 SO4 A 207 GLU B 4 GLU B 8 SITE 2 AC4 6 ZN B 202 HOH B 301 SITE 1 AC5 4 ALA A 1 ASP A 12 ASP A 39 HOH A 308 SITE 1 AC6 12 ASP A 5 GLU A 8 ZN A 202 ZN A 203 SITE 2 AC6 12 SO4 A 207 HOH A 304 ASP B 2 GLU B 4 SITE 3 AC6 12 ASP B 5 ZN B 201 ZN B 202 SO4 B 204 SITE 1 AC7 13 ASP A 2 ASP A 5 ZN A 202 ZN A 204 SITE 2 AC7 13 SO4 A 206 ALA B 1 ASP B 2 ASP B 5 SITE 3 AC7 13 GLU B 8 ZN B 201 ZN B 202 SO4 B 204 SITE 4 AC7 13 HOH B 301 SITE 1 AC8 16 GLU A 4 MET A 7 GLU A 8 MET A 33 SITE 2 AC8 16 PRO A 46 HEC A 201 HOH A 310 GLU B 4 SITE 3 AC8 16 PHE B 61 GLY B 64 PHE B 65 CYS B 98 SITE 4 AC8 16 CYS B 101 HIS B 102 TYR B 105 ARG B 106 SITE 1 AC9 5 SO4 A 206 SO4 A 207 ASP B 5 ZN B 202 SITE 2 AC9 5 SO4 B 204 SITE 1 AD1 10 ASP A 5 ZN A 202 ZN A 203 ZN A 204 SITE 2 AD1 10 SO4 A 206 SO4 A 207 GLU B 4 ASP B 5 SITE 3 AD1 10 ZN B 201 HOH B 301 SITE 1 AD2 5 ALA B 1 GLU B 8 ASP B 12 ASP B 39 SITE 2 AD2 5 HOH B 312 SITE 1 AD3 5 ZN A 202 SO4 A 206 SO4 A 207 ASP B 5 SITE 2 AD3 5 ZN B 201 CRYST1 94.608 94.608 94.608 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010570 0.00000 MASTER 574 0 12 12 0 0 32 6 0 0 0 18 END