HEADER CHAPERONE 21-JAN-15 5AFF TITLE SYMPORTIN 1 CHAPERONES 5S RNP ASSEMBLY DURING RIBOSOME TITLE 2 BIOGENESIS BY OCCUPYING AN ESSENTIAL RRNA BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYMPORTIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RIBOSOMAL PROTEIN L5; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: N-TERMINUS LINEAR MOTIF, UNP RESIDUES 1-41; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: RIBOSOMAL PROTEIN L11; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 8 ORGANISM_TAXID: 209285; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 13 ORGANISM_TAXID: 209285; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHAPERONE, RIBOSOME BIOGENESIS, ALPHA SOLENOID. EXPDTA X-RAY DIFFRACTION AUTHOR F.R.CALVINO,S.KHARDE,K.WILD,G.BANGE,I.SINNING REVDAT 1 15-APR-15 5AFF 0 JRNL AUTH F.R.CALVINO,S.KHARDE,A.ORI,A.HENDRICKS,K.WILD,D.KRESSLER, JRNL AUTH 2 G.BANGE,E.HURT,M.BECK,I.SINNING JRNL TITL SYMPORTIN 1 CHAPERONES 5S RNP ASSEMBLY DURING RIBOSOME JRNL TITL 2 BIOGENESIS BY OCCUPYING AN ESSENTIAL RRNA-BINDING SITE. JRNL REF NAT.COMMUN. V. 6 6510 2015 JRNL REFN ISSN 2041-1723 JRNL PMID 25849277 JRNL DOI 10.1038/NCOMMS7510 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.398 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.256 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.35 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.80 REMARK 3 NUMBER OF REFLECTIONS : 13499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2391 REMARK 3 R VALUE (WORKING SET) : 0.2361 REMARK 3 FREE R VALUE : 0.2998 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2613 - 5.8073 1.00 2707 128 0.2137 0.2898 REMARK 3 2 5.8073 - 4.6106 1.00 2579 126 0.2562 0.3026 REMARK 3 3 4.6106 - 4.0281 1.00 2541 138 0.2228 0.2787 REMARK 3 4 4.0281 - 3.6599 1.00 2524 136 0.2548 0.3166 REMARK 3 5 3.6599 - 3.3976 0.99 2483 137 0.3061 0.3525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.48 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 112.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5700 REMARK 3 ANGLE : 1.332 7720 REMARK 3 CHIRALITY : 0.053 911 REMARK 3 PLANARITY : 0.007 980 REMARK 3 DIHEDRAL : 18.187 2112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-15. REMARK 100 THE PDBE ID CODE IS EBI-62780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : PT COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13505 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.40 REMARK 200 RESOLUTION RANGE LOW (A) : 49.29 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.1 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.3 REMARK 200 R MERGE FOR SHELL (I) : 0.58 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.19 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRIES 4GMO AND 3U5E, CHAIN J REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.1 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 8% (V/V) REMARK 280 PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.04350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.61700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.61700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.04350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 THR A 24 REMARK 465 ASP A 25 REMARK 465 PRO A 290 REMARK 465 GLY A 291 REMARK 465 GLY A 292 REMARK 465 ALA A 293 REMARK 465 LYS A 294 REMARK 465 PHE A 295 REMARK 465 ASN A 296 REMARK 465 GLY A 297 REMARK 465 ASP A 298 REMARK 465 ALA A 299 REMARK 465 ARG A 300 REMARK 465 GLN A 328 REMARK 465 GLY A 329 REMARK 465 SER A 330 REMARK 465 ARG A 331 REMARK 465 GLU A 332 REMARK 465 SER A 333 REMARK 465 PRO A 334 REMARK 465 ILE A 335 REMARK 465 SER A 336 REMARK 465 ALA A 337 REMARK 465 ALA A 338 REMARK 465 ASP A 339 REMARK 465 GLU A 340 REMARK 465 GLU A 341 REMARK 465 TRP A 342 REMARK 465 ASN A 343 REMARK 465 GLY A 344 REMARK 465 PHE A 345 REMARK 465 ASP A 346 REMARK 465 ASP A 347 REMARK 465 ALA A 348 REMARK 465 ASP A 349 REMARK 465 GLY A 350 REMARK 465 ASP A 351 REMARK 465 ALA A 352 REMARK 465 MET A 353 REMARK 465 ASP A 354 REMARK 465 VAL A 355 REMARK 465 ASP A 356 REMARK 465 GLN A 357 REMARK 465 LYS A 358 REMARK 465 SER A 359 REMARK 465 SER A 360 REMARK 465 SER A 361 REMARK 465 GLY A 362 REMARK 465 GLU A 363 REMARK 465 ASP A 364 REMARK 465 GLN A 365 REMARK 465 GLU A 366 REMARK 465 GLU A 367 REMARK 465 ASP A 368 REMARK 465 TYR A 369 REMARK 465 GLU A 370 REMARK 465 GLU A 371 REMARK 465 ILE A 372 REMARK 465 ASP A 373 REMARK 465 VAL A 374 REMARK 465 LYS A 375 REMARK 465 GLU A 376 REMARK 465 ASP A 377 REMARK 465 ASP A 378 REMARK 465 GLU A 379 REMARK 465 ASP A 380 REMARK 465 ASP A 381 REMARK 465 ASP A 382 REMARK 465 ASP A 383 REMARK 465 ASP A 384 REMARK 465 GLN A 536 REMARK 465 GLN A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 GLY A 540 REMARK 465 ASN A 541 REMARK 465 SER A 542 REMARK 465 ASN A 543 REMARK 465 SER A 544 REMARK 465 ILE A 545 REMARK 465 GLU A 546 REMARK 465 GLU A 547 REMARK 465 PRO A 548 REMARK 465 PRO A 675 REMARK 465 LYS A 676 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 24 REMARK 465 GLN B 25 REMARK 465 GLY B 25A REMARK 465 ALA B 31 REMARK 465 ARG B 32 REMARK 465 LYS B 33 REMARK 465 ARG B 34 REMARK 465 LEU B 35 REMARK 465 ILE B 36 REMARK 465 THR B 37 REMARK 465 GLN B 38 REMARK 465 ALA B 39 REMARK 465 LYS B 40 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 GLU C 4 REMARK 465 LYS C 5 REMARK 465 ALA C 6 REMARK 465 GLN C 7 REMARK 465 ASN C 8 REMARK 465 PRO C 9 REMARK 465 MET C 10 REMARK 465 ARG C 11 REMARK 465 GLU C 12 REMARK 465 LEU C 13 REMARK 465 ARG C 14 REMARK 465 LYS C 50 REMARK 465 ALA C 51 REMARK 465 ARG C 52 REMARK 465 TYR C 53 REMARK 465 THR C 54 REMARK 465 VAL C 55 REMARK 465 ARG C 56 REMARK 465 GLN C 57 REMARK 465 PHE C 58 REMARK 465 GLY C 59 REMARK 465 ILE C 60 REMARK 465 ARG C 61 REMARK 465 ARG C 62 REMARK 465 ASN C 63 REMARK 465 GLU C 64 REMARK 465 LYS C 65 REMARK 465 PRO C 135 REMARK 465 GLY C 136 REMARK 465 GLU C 137 REMARK 465 ARG C 138 REMARK 465 VAL C 139 REMARK 465 ALA C 140 REMARK 465 LYS C 141 REMARK 465 ARG C 142 REMARK 465 ARG C 143 REMARK 465 ARG C 144 REMARK 465 CYS C 145 REMARK 465 LYS C 146 REMARK 465 SER C 147 REMARK 465 ARG C 148 REMARK 465 ILE C 149 REMARK 465 GLY C 150 REMARK 465 ALA C 151 REMARK 465 SER C 152 REMARK 465 HIS C 153 REMARK 465 ARG C 154 REMARK 465 ILE C 154A REMARK 465 ASP C 168 REMARK 465 GLY C 169 REMARK 465 ILE C 170 REMARK 465 VAL C 171 REMARK 465 ARG C 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 549 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 211 NH1 ARG B 22 2.14 REMARK 500 O ILE A 278 OG1 THR A 282 2.09 REMARK 500 O ASP A 393 N ARG A 396 2.07 REMARK 500 OG1 THR A 403 O ILE C 107 2.09 REMARK 500 OD2 ASP A 404 N SER C 23 2.17 REMARK 500 OD2 ASP C 29 NH2 ARG C 33 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS A 114 OD2 ASP A 225 4445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 46 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 LEU C 92 CA - CB - CG ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 46 43.50 -64.43 REMARK 500 ASP A 47 75.84 -113.81 REMARK 500 GLN A 75 33.88 70.70 REMARK 500 GLU A 107 -164.33 -67.95 REMARK 500 SER A 266 62.09 -155.08 REMARK 500 ALA A 272 81.91 -59.22 REMARK 500 SER A 388 -134.30 64.52 REMARK 500 GLU A 395 -8.94 -55.15 REMARK 500 ASN A 463 -127.79 64.39 REMARK 500 ALA A 494 -127.42 62.00 REMARK 500 HIS A 514 72.45 64.19 REMARK 500 ASN A 522 77.46 38.67 REMARK 500 PHE A 552 34.28 -94.44 REMARK 500 GLN A 589 47.47 -104.34 REMARK 500 THR A 648 66.43 -151.14 REMARK 500 LYS A 672 -33.00 -37.94 REMARK 500 TYR B 29 -28.74 103.21 REMARK 500 GLN C 16 -81.09 -70.56 REMARK 500 GLU C 39 -72.44 -62.73 REMARK 500 ALA C 67 142.82 -171.82 REMARK 500 PRO C 75 -72.19 -59.66 REMARK 500 VAL C 87 -43.74 -27.19 REMARK 500 GLU C 89 22.82 47.40 REMARK 500 ASP C 112 4.73 -69.77 REMARK 500 LYS C 116 175.55 -59.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 494 ASP A 495 -144.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 5AFF A 24 676 UNP G0S5S6 G0S5S6_CHATD 24 676 DBREF 5AFF B 1 40 UNP G0SEG2 G0SEG2_CHATD 1 41 DBREF 5AFF C 1 172 UNP G0SHQ2 G0SHQ2_CHATD 1 173 SEQADV 5AFF MET A 23 UNP G0S5S6 EXPRESSION TAG SEQADV 5AFF MET B -6 UNP G0SEG2 EXPRESSION TAG SEQADV 5AFF HIS B -5 UNP G0SEG2 EXPRESSION TAG SEQADV 5AFF HIS B -4 UNP G0SEG2 EXPRESSION TAG SEQADV 5AFF HIS B -3 UNP G0SEG2 EXPRESSION TAG SEQADV 5AFF HIS B -2 UNP G0SEG2 EXPRESSION TAG SEQADV 5AFF HIS B -1 UNP G0SEG2 EXPRESSION TAG SEQADV 5AFF HIS B 0 UNP G0SEG2 EXPRESSION TAG SEQRES 1 A 654 MET THR ASP PRO GLU LEU ALA LYS LEU ARG GLU ASP LYS SEQRES 2 A 654 ILE LEU PRO VAL LEU LYS ASP LEU LYS SER PRO ASP ALA SEQRES 3 A 654 LYS SER ARG THR THR ALA ALA GLY ALA ILE ALA ASN ILE SEQRES 4 A 654 VAL GLN ASP ALA LYS CYS ARG LYS LEU LEU LEU ARG GLU SEQRES 5 A 654 GLN VAL VAL HIS ILE VAL LEU THR GLU THR LEU THR ASP SEQRES 6 A 654 ASN ASN ILE ASP SER ARG ALA ALA GLY TRP GLU ILE LEU SEQRES 7 A 654 LYS VAL LEU ALA GLN GLU GLU GLU ALA ASP PHE CYS VAL SEQRES 8 A 654 HIS LEU TYR ARG LEU ASP VAL LEU THR ALA ILE GLU HIS SEQRES 9 A 654 ALA ALA LYS ALA VAL LEU GLU THR LEU THR THR SER GLU SEQRES 10 A 654 PRO PRO PHE SER LYS LEU LEU LYS ALA GLN GLN ARG LEU SEQRES 11 A 654 VAL TRP ASP ILE THR GLY SER LEU LEU VAL LEU ILE GLY SEQRES 12 A 654 LEU LEU ALA LEU ALA ARG ASP GLU ILE HIS GLU ALA VAL SEQRES 13 A 654 ALA THR LYS GLN THR ILE LEU ARG LEU LEU PHE ARG LEU SEQRES 14 A 654 ILE SER ALA ASP ILE ALA PRO GLN ASP ILE TYR GLU GLU SEQRES 15 A 654 ALA ILE SER CYS LEU THR THR LEU SER GLU ASP ASN LEU SEQRES 16 A 654 LYS VAL GLY GLN ALA ILE THR ASP ASP GLN GLU THR HIS SEQRES 17 A 654 VAL TYR ASP VAL LEU LEU LYS LEU ALA THR GLY THR ASP SEQRES 18 A 654 PRO ARG ALA VAL MET ALA CYS GLY VAL LEU HIS ASN VAL SEQRES 19 A 654 PHE THR SER LEU GLN TRP MET ASP HIS SER PRO GLY LYS SEQRES 20 A 654 ASP GLY ALA CYS ASP ALA ILE LEU ILE PRO THR LEU THR SEQRES 21 A 654 ARG ALA LEU GLU HIS VAL VAL PRO GLY GLY ALA LYS PHE SEQRES 22 A 654 ASN GLY ASP ALA ARG TYR ALA ASN ILE THR LEU LEU ALA SEQRES 23 A 654 LEU VAL THR LEU ALA SER ILE GLY THR ASP PHE GLN GLU SEQRES 24 A 654 THR LEU VAL LYS GLY ASN GLN GLY SER ARG GLU SER PRO SEQRES 25 A 654 ILE SER ALA ALA ASP GLU GLU TRP ASN GLY PHE ASP ASP SEQRES 26 A 654 ALA ASP GLY ASP ALA MET ASP VAL ASP GLN LYS SER SER SEQRES 27 A 654 SER GLY GLU ASP GLN GLU GLU ASP TYR GLU GLU ILE ASP SEQRES 28 A 654 VAL LYS GLU ASP ASP GLU ASP ASP ASP ASP ASP SER ILE SEQRES 29 A 654 THR SER GLU MET GLN ALA ASP MET GLU ARG VAL VAL GLY SEQRES 30 A 654 ALA ASP GLY THR ASP ASP GLY ASP LEU GLU ASP LEU PRO SEQRES 31 A 654 THR LEU ARG GLU LEU ILE GLN THR ALA VAL PRO GLN LEU SEQRES 32 A 654 ILE ARG LEU SER ASN LEU PRO ILE ASP SER ASP GLU SER SEQRES 33 A 654 LEU THR ILE GLN SER HIS ALA LEU SER ALA LEU ASN ASN SEQRES 34 A 654 ILE SER TRP THR ILE SER CYS LEU GLU PHE ALA ASN GLY SEQRES 35 A 654 GLU ASN ALA ASN ILE HIS ASN ALA TRP TYR PRO THR ALA SEQRES 36 A 654 LYS LYS ILE TRP ARG LYS THR ILE LEU PRO ILE LEU GLU SEQRES 37 A 654 ALA ASP SER ALA ASP LEU LYS LEU ALA THR GLN VAL THR SEQRES 38 A 654 SER LEU ALA TRP ALA VAL ALA ARG VAL LEU HIS GLY GLU SEQRES 39 A 654 THR PRO THR ASP GLY ASN PRO HIS ARG LYS PHE ILE SER SEQRES 40 A 654 LEU TYR HIS SER SER LYS GLN GLN ALA GLY GLY ASN SER SEQRES 41 A 654 ASN SER ILE GLU GLU PRO GLU ASP PRO PHE GLN GLY LEU SEQRES 42 A 654 GLY VAL LYS CYS ILE GLY VAL VAL GLY SER LEU ALA HIS SEQRES 43 A 654 ASP PRO ALA PRO ILE GLU VAL ASN ARG GLU VAL GLY VAL SEQRES 44 A 654 PHE LEU VAL THR LEU LEU ARG GLN SER ASN ASN VAL PRO SEQRES 45 A 654 PRO ALA GLU ILE VAL GLU ALA LEU ASN GLN LEU PHE ASP SEQRES 46 A 654 ILE TYR GLY ASP GLU GLU LEU ALA CYS ASP LYS GLU VAL SEQRES 47 A 654 PHE TRP LYS ASP GLY PHE LEU LYS HIS LEU GLU GLU PHE SEQRES 48 A 654 LEU PRO LYS MET ARG THR LEU THR LYS GLY ILE ASP LYS SEQRES 49 A 654 ARG THR GLN PRO GLU LEU ARG THR ARG ALA ASP GLU ALA SEQRES 50 A 654 LEU LEU ASN LEU GLY ARG PHE VAL GLN TYR LYS LYS LYS SEQRES 51 A 654 HIS ALA PRO LYS SEQRES 1 B 48 MET HIS HIS HIS HIS HIS HIS MET ALA PHE HIS LYS LEU SEQRES 2 B 48 VAL LYS ASN SER ALA TYR TYR SER ARG PHE GLN THR LYS SEQRES 3 B 48 PHE LYS ARG ARG ARG GLN GLY LYS THR ASP TYR TYR ALA SEQRES 4 B 48 ARG LYS ARG LEU ILE THR GLN ALA LYS SEQRES 1 C 173 MET SER SER GLU LYS ALA GLN ASN PRO MET ARG GLU LEU SEQRES 2 C 173 ARG ILE GLN LYS LEU VAL LEU ASN ILE SER VAL GLY GLU SEQRES 3 C 173 SER GLY ASP ARG LEU THR ARG ALA ALA LYS VAL LEU GLU SEQRES 4 C 173 GLN LEU SER GLY GLN THR PRO VAL TYR SER LYS ALA ARG SEQRES 5 C 173 TYR THR VAL ARG GLN PHE GLY ILE ARG ARG ASN GLU LYS SEQRES 6 C 173 ILE ALA VAL HIS VAL THR VAL ARG GLY PRO LYS ALA GLU SEQRES 7 C 173 GLU ILE LEU GLU ARG GLY LEU LYS VAL LYS GLU TYR GLU SEQRES 8 C 173 LEU ARG ARG ARG ASN PHE SER GLU THR GLY ASN PHE GLY SEQRES 9 C 173 PHE GLY ILE SER GLU HIS ILE ASP LEU GLY ILE LYS TYR SEQRES 10 C 173 ASP PRO SER ILE GLY ILE TYR GLY MET ASP PHE TYR CYS SEQRES 11 C 173 CYS MET THR ARG PRO GLY GLU ARG VAL ALA LYS ARG ARG SEQRES 12 C 173 ARG CYS LYS SER ARG ILE GLY ALA SER HIS ARG ILE THR SEQRES 13 C 173 ARG GLU GLU THR ILE ARG TRP PHE LYS GLN ARG PHE ASP SEQRES 14 C 173 GLY ILE VAL ARG HELIX 1 1 PRO A 26 SER A 45 1 20 HELIX 2 2 LYS A 49 GLN A 63 1 15 HELIX 3 3 ASP A 64 GLU A 74 1 11 HELIX 4 4 GLN A 75 GLU A 83 1 9 HELIX 5 5 THR A 84 ASP A 87 5 4 HELIX 6 6 ASN A 89 GLU A 107 1 19 HELIX 7 7 GLU A 108 LEU A 118 1 11 HELIX 8 8 ASP A 119 THR A 137 1 19 HELIX 9 9 PRO A 141 LEU A 145 5 5 HELIX 10 10 LEU A 146 ARG A 171 1 26 HELIX 11 11 ARG A 171 ALA A 179 1 9 HELIX 12 12 LYS A 181 ASP A 195 1 15 HELIX 13 13 PRO A 198 SER A 213 1 16 HELIX 14 14 ASN A 216 ASP A 225 1 10 HELIX 15 15 HIS A 230 GLY A 241 1 12 HELIX 16 16 ARG A 245 LEU A 260 1 16 HELIX 17 17 GLY A 268 ALA A 272 5 5 HELIX 18 18 CYS A 273 ILE A 276 5 4 HELIX 19 19 LEU A 277 HIS A 287 1 11 HELIX 20 20 TYR A 301 ASN A 327 1 27 HELIX 21 21 SER A 388 VAL A 398 1 11 HELIX 22 22 LEU A 411 THR A 420 1 10 HELIX 23 23 THR A 420 LEU A 431 1 12 HELIX 24 24 ASP A 436 CYS A 458 1 23 HELIX 25 25 ASN A 466 ASP A 492 1 27 HELIX 26 26 LEU A 496 HIS A 514 1 19 HELIX 27 27 ASN A 522 SER A 534 1 13 HELIX 28 28 ASP A 550 GLN A 553 5 4 HELIX 29 29 GLY A 554 LEU A 566 1 13 HELIX 30 30 PRO A 572 GLN A 589 1 18 HELIX 31 31 PRO A 594 TYR A 609 1 16 HELIX 32 32 LEU A 614 VAL A 620 1 7 HELIX 33 33 GLY A 625 GLY A 643 1 19 HELIX 34 34 GLN A 649 HIS A 673 1 25 HELIX 35 35 LYS B 8 ARG B 15 1 8 HELIX 36 36 GLY C 28 GLY C 43 1 16 HELIX 37 37 GLY C 74 LYS C 88 1 15 HELIX 38 38 THR C 155 ARG C 166 1 12 SHEET 1 CA 3 LYS C 17 SER C 23 0 SHEET 2 CA 3 ALA C 67 ARG C 73 -1 O VAL C 68 N ILE C 22 SHEET 3 CA 3 VAL C 47 TYR C 48 -1 O VAL C 47 N HIS C 69 SHEET 1 CB 2 PHE C 103 ILE C 107 0 SHEET 2 CB 2 MET C 126 CYS C 130 -1 O MET C 126 N ILE C 107 CISPEP 1 PRO A 140 PRO A 141 0 -17.78 CISPEP 2 ASP A 569 PRO A 570 0 4.21 CISPEP 3 THR A 648 GLN A 649 0 20.36 CRYST1 60.087 105.959 147.234 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006792 0.00000 MASTER 481 0 0 38 5 0 0 6 0 0 0 69 END