HEADER HYDROLASE/HYDROLASE INHIBITOR 20-MAY-15 4ZX4 TITLE X-RAY CRYSTAL STRUCTURE OF PFA-M1 IN COMPLEX WITH HYDROXAMIC ACID- TITLE 2 BASED INHIBITOR 10O COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 195-1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 186763; SOURCE 4 STRAIN: ISOLATE FCB1 / COLUMBIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRCHIS-2B KEYWDS M1 ALANYL-AMINOPEPTIDASE, PROTEASE, INHIBITOR, HYDROXAMIC ACID, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DRINKWATER,S.MCGOWAN REVDAT 3 08-JAN-20 4ZX4 1 REMARK REVDAT 2 27-SEP-17 4ZX4 1 JRNL REMARK REVDAT 1 30-MAR-16 4ZX4 0 JRNL AUTH N.DRINKWATER,N.B.VINH,S.N.MISTRY,R.S.BAMERT,C.RUGGERI, JRNL AUTH 2 J.P.HOLLERAN,S.LOGANATHAN,A.PAIARDINI,S.A.CHARMAN, JRNL AUTH 3 A.K.POWELL,V.M.AVERY,S.MCGOWAN,P.J.SCAMMELLS JRNL TITL POTENT DUAL INHIBITORS OF PLASMODIUM FALCIPARUM M1 AND M17 JRNL TITL 2 AMINOPEPTIDASES THROUGH OPTIMIZATION OF S1 POCKET JRNL TITL 3 INTERACTIONS. JRNL REF EUR.J.MED.CHEM. V. 110 43 2016 JRNL REFN ISSN 0223-5234 JRNL PMID 26807544 JRNL DOI 10.1016/J.EJMECH.2016.01.015 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 77630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0465 - 5.7606 1.00 2813 169 0.1561 0.1526 REMARK 3 2 5.7606 - 4.5759 1.00 2719 150 0.1294 0.1471 REMARK 3 3 4.5759 - 3.9985 1.00 2702 128 0.1248 0.1707 REMARK 3 4 3.9985 - 3.6334 1.00 2663 154 0.1381 0.1656 REMARK 3 5 3.6334 - 3.3732 1.00 2680 119 0.1390 0.1573 REMARK 3 6 3.3732 - 3.1745 1.00 2644 145 0.1482 0.1802 REMARK 3 7 3.1745 - 3.0156 1.00 2647 128 0.1605 0.1968 REMARK 3 8 3.0156 - 2.8844 1.00 2625 145 0.1575 0.2130 REMARK 3 9 2.8844 - 2.7734 1.00 2644 139 0.1622 0.2050 REMARK 3 10 2.7734 - 2.6777 1.00 2638 149 0.1596 0.2191 REMARK 3 11 2.6777 - 2.5940 1.00 2597 125 0.1549 0.1813 REMARK 3 12 2.5940 - 2.5199 1.00 2630 151 0.1602 0.2154 REMARK 3 13 2.5199 - 2.4536 1.00 2622 152 0.1595 0.2156 REMARK 3 14 2.4536 - 2.3937 1.00 2634 128 0.1606 0.2501 REMARK 3 15 2.3937 - 2.3393 1.00 2597 124 0.1634 0.2090 REMARK 3 16 2.3393 - 2.2896 1.00 2637 142 0.1679 0.2453 REMARK 3 17 2.2896 - 2.2438 1.00 2609 140 0.1617 0.2042 REMARK 3 18 2.2438 - 2.2014 1.00 2596 123 0.1646 0.2348 REMARK 3 19 2.2014 - 2.1621 1.00 2628 150 0.1631 0.2352 REMARK 3 20 2.1621 - 2.1255 1.00 2596 149 0.1757 0.2238 REMARK 3 21 2.1255 - 2.0912 1.00 2573 159 0.1757 0.2356 REMARK 3 22 2.0912 - 2.0590 1.00 2632 131 0.1982 0.2258 REMARK 3 23 2.0590 - 2.0288 1.00 2566 163 0.1919 0.2539 REMARK 3 24 2.0288 - 2.0002 1.00 2617 131 0.2073 0.2658 REMARK 3 25 2.0002 - 1.9732 1.00 2597 121 0.2085 0.2598 REMARK 3 26 1.9732 - 1.9475 1.00 2605 143 0.2190 0.2883 REMARK 3 27 1.9475 - 1.9232 1.00 2582 147 0.2278 0.2678 REMARK 3 28 1.9232 - 1.9000 1.00 2599 133 0.2309 0.2583 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 7572 REMARK 3 ANGLE : 1.280 10267 REMARK 3 CHIRALITY : 0.061 1126 REMARK 3 PLANARITY : 0.007 1311 REMARK 3 DIHEDRAL : 13.732 2864 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.7364 113.0849 129.0445 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.1210 REMARK 3 T33: 0.0989 T12: -0.0064 REMARK 3 T13: 0.0227 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.4539 L22: 0.7613 REMARK 3 L33: 0.5395 L12: -0.1932 REMARK 3 L13: 0.0724 L23: 0.1013 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: -0.0074 S13: 0.0021 REMARK 3 S21: 0.0205 S22: 0.0295 S23: -0.0173 REMARK 3 S31: -0.0539 S32: -0.0030 S33: 0.0288 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10% (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS PH 8.5, 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 LYS A 261 CD CE NZ REMARK 470 VAL A 264 CG1 CG2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLU A 348 CD OE1 OE2 REMARK 470 LYS A 405 NZ REMARK 470 LYS A 480 CE NZ REMARK 470 ASN A 635 CG OD1 ND2 REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CD OE1 OE2 REMARK 470 GLU A 699 CG CD OE1 OE2 REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 951 CE NZ REMARK 470 LYS A 980 CD CE NZ REMARK 470 LYS A1019 CE NZ REMARK 470 LYS A1075 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 566 O HOH A 1201 2.05 REMARK 500 OE1 GLU A 526 O HOH A 1202 2.08 REMARK 500 O HOH A 1834 O HOH A 1902 2.09 REMARK 500 OD1 ASN A 1059 O HOH A 1203 2.11 REMARK 500 OD1 ASN A 573 O HOH A 1204 2.12 REMARK 500 O HOH A 1742 O HOH A 2008 2.13 REMARK 500 O HOH A 1920 O HOH A 1957 2.13 REMARK 500 O HOH A 1850 O HOH A 1961 2.16 REMARK 500 O HOH A 1696 O HOH A 1945 2.18 REMARK 500 O HOH A 1985 O HOH A 2041 2.18 REMARK 500 OG SER A 668 O HOH A 1205 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -45.86 -130.86 REMARK 500 LYS A 311 -114.65 55.66 REMARK 500 HIS A 370 146.45 -172.27 REMARK 500 VAL A 459 -146.44 -134.26 REMARK 500 GLU A 463 35.52 -91.17 REMARK 500 LEU A 475 -37.22 -131.68 REMARK 500 SER A 549 -67.75 -93.20 REMARK 500 ASN A 635 0.19 -65.09 REMARK 500 PHE A 736 74.43 57.89 REMARK 500 ASP A 974 33.54 -98.68 REMARK 500 VAL A 986 -51.19 -125.69 REMARK 500 LYS A 988 -131.97 47.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 370 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2151 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2152 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 100.0 REMARK 620 3 GLU A 519 OE1 103.1 102.1 REMARK 620 4 4TL A1101 O 104.6 152.0 85.4 REMARK 620 5 4TL A1101 OAF 94.4 89.2 157.0 75.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1331 O REMARK 620 2 HOH A2012 O 91.9 REMARK 620 3 HOH A1423 O 95.6 80.2 REMARK 620 4 HOH A1502 O 98.6 166.2 89.8 REMARK 620 5 HOH A2122 O 172.2 81.8 87.8 88.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4TL A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 1110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBG RELATED DB: PDB REMARK 900 3EBG CONTAINS THE SAME PROTEIN IN UNLIGANDED FORM REMARK 900 RELATED ID: 4ZW3 RELATED DB: PDB REMARK 900 RELATED ID: 4ZW5 RELATED DB: PDB REMARK 900 RELATED ID: 4ZW6 RELATED DB: PDB REMARK 900 RELATED ID: 4ZW7 RELATED DB: PDB REMARK 900 RELATED ID: 4ZW8 RELATED DB: PDB REMARK 900 RELATED ID: 4ZX3 RELATED DB: PDB REMARK 900 RELATED ID: 4ZX5 RELATED DB: PDB REMARK 900 RELATED ID: 4ZX6 RELATED DB: PDB DBREF 4ZX4 A 195 1084 UNP O96935 AMP1_PLAFQ 195 1084 SEQADV 4ZX4 GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 4ZX4 GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 4ZX4 PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 4ZX4 GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 4ZX4 GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 4ZX4 GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 4ZX4 GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 890 GLU PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER SEQRES 2 A 890 GLY PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE SEQRES 3 A 890 HIS ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET SEQRES 4 A 890 ASP ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE SEQRES 5 A 890 ASP GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN SEQRES 6 A 890 ASN LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP SEQRES 7 A 890 ASN GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SEQRES 8 A 890 SER LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO SEQRES 9 A 890 GLU THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS SEQRES 10 A 890 ASN ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG SEQRES 11 A 890 ARG ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA SEQRES 12 A 890 LYS TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR SEQRES 13 A 890 PRO VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE SEQRES 14 A 890 GLU ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP SEQRES 15 A 890 PRO PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA SEQRES 16 A 890 GLY ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS SEQRES 17 A 890 TYR THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU SEQRES 18 A 890 GLU LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS SEQRES 19 A 890 LEU LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY SEQRES 20 A 890 LEU GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SEQRES 21 A 890 SER ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU SEQRES 22 A 890 ASN ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS SEQRES 23 A 890 ASN SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL SEQRES 24 A 890 VAL GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG SEQRES 25 A 890 VAL THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU SEQRES 26 A 890 GLY LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU SEQRES 27 A 890 MET THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP SEQRES 28 A 890 LEU LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO SEQRES 29 A 890 LEU SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET SEQRES 30 A 890 GLU ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER SEQRES 31 A 890 GLU VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU SEQRES 32 A 890 TYR TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN SEQRES 33 A 890 ASP GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA SEQRES 34 A 890 MET GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER SEQRES 35 A 890 ALA ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER SEQRES 36 A 890 GLY THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA SEQRES 37 A 890 GLU LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR SEQRES 38 A 890 LYS PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE SEQRES 39 A 890 ILE PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY SEQRES 40 A 890 LYS GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS SEQRES 41 A 890 GLU SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS SEQRES 42 A 890 PRO ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL SEQRES 43 A 890 TYR ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU SEQRES 44 A 890 LEU LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SEQRES 45 A 890 SER CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN SEQRES 46 A 890 TYR ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SEQRES 47 A 890 SER PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP SEQRES 48 A 890 ALA ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA SEQRES 49 A 890 GLY PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG SEQRES 50 A 890 TYR ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL SEQRES 51 A 890 LEU ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY SEQRES 52 A 890 ASP LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER SEQRES 53 A 890 LEU GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP SEQRES 54 A 890 GLU SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR SEQRES 55 A 890 LEU ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN SEQRES 56 A 890 TYR PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SEQRES 57 A 890 SER PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SEQRES 58 A 890 SER ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS SEQRES 59 A 890 THR TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN SEQRES 60 A 890 GLU TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP SEQRES 61 A 890 ILE TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU SEQRES 62 A 890 LYS ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR SEQRES 63 A 890 LEU PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SEQRES 64 A 890 SER GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR SEQRES 65 A 890 LYS THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU SEQRES 66 A 890 CYS GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS SEQRES 67 A 890 ARG GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU SEQRES 68 A 890 GLN GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU SEQRES 69 A 890 LEU ARG LEU THR ASN LYS HET 4TL A1101 27 HET ZN A1102 1 HET MG A1103 1 HET PO4 A1104 5 HET GOL A1105 6 HET GOL A1106 6 HET GOL A1107 6 HET DMS A1108 4 HET DMS A1109 4 HET DMS A1110 4 HETNAM 4TL N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(3',4',5'- HETNAM 2 4TL TRIFLUOROBIPHENYL-4-YL)ETHYL]-2,2-DIMETHYLPROPANAMIDE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 4TL C19 H19 F3 N2 O3 FORMUL 3 ZN ZN 2+ FORMUL 4 MG MG 2+ FORMUL 5 PO4 O4 P 3- FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 DMS 3(C2 H6 O S) FORMUL 12 HOH *952(H2 O) HELIX 1 AA1 LYS A 202 TYR A 204 5 3 HELIX 2 AA2 SER A 280 VAL A 283 5 4 HELIX 3 AA3 HIS A 297 ASN A 301 5 5 HELIX 4 AA4 GLY A 322 ILE A 326 5 5 HELIX 5 AA5 PRO A 381 PHE A 385 5 5 HELIX 6 AA6 LYS A 417 LYS A 421 5 5 HELIX 7 AA7 LEU A 422 GLY A 441 1 20 HELIX 8 AA8 ASN A 473 LEU A 475 5 3 HELIX 9 AA9 ASP A 484 HIS A 500 1 17 HELIX 10 AB1 ASP A 511 PHE A 513 5 3 HELIX 11 AB2 GLN A 514 LYS A 535 1 22 HELIX 12 AB3 VAL A 537 SER A 556 1 20 HELIX 13 AB4 SER A 570 PHE A 574 5 5 HELIX 14 AB5 THR A 576 ASP A 611 1 36 HELIX 15 AB6 THR A 616 ALA A 633 1 18 HELIX 16 AB7 LEU A 639 TYR A 642 5 4 HELIX 17 AB8 LEU A 643 GLN A 648 1 6 HELIX 18 AB9 THR A 747 ASP A 758 1 12 HELIX 19 AC1 ASP A 760 GLU A 789 1 30 HELIX 20 AC2 ASN A 800 GLU A 812 1 13 HELIX 21 AC3 ASP A 817 VAL A 825 1 9 HELIX 22 AC4 GLN A 829 ILE A 834 1 6 HELIX 23 AC5 ASN A 835 VAL A 837 5 3 HELIX 24 AC6 ASP A 841 LEU A 871 1 31 HELIX 25 AC7 LEU A 871 ASP A 876 1 6 HELIX 26 AC8 ASP A 888 ALA A 908 1 21 HELIX 27 AC9 ASN A 912 SER A 921 1 10 HELIX 28 AD1 TYR A 925 SER A 936 1 12 HELIX 29 AD2 ALA A 937 PHE A 939 5 3 HELIX 30 AD3 LYS A 941 LYS A 954 1 14 HELIX 31 AD4 ASP A 956 SER A 970 1 15 HELIX 32 AD5 ASP A 974 VAL A 986 1 13 HELIX 33 AD6 ASN A 992 ASN A 1005 1 14 HELIX 34 AD7 ASN A 1006 HIS A 1011 1 6 HELIX 35 AD8 GLY A 1015 LYS A 1030 1 16 HELIX 36 AD9 ASN A 1032 LEU A 1039 1 8 HELIX 37 AE1 CYS A 1040 LEU A 1049 5 10 HELIX 38 AE2 ASP A 1050 GLN A 1066 1 17 HELIX 39 AE3 SER A 1071 THR A 1082 1 12 SHEET 1 AA1 2 HIS A 199 TYR A 200 0 SHEET 2 AA1 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 AA2 8 LYS A 261 LYS A 262 0 SHEET 2 AA2 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 AA2 8 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 4 AA2 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 AA2 8 PHE A 209 ILE A 220 -1 N ASN A 219 O ILE A 226 SHEET 6 AA2 8 ALA A 337 ASP A 346 1 O THR A 342 N ILE A 218 SHEET 7 AA2 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 AA2 8 ASP A 358 ILE A 365 -1 N PHE A 363 O GLY A 371 SHEET 1 AA3 3 LEU A 244 ASP A 247 0 SHEET 2 AA3 3 PHE A 275 ILE A 278 -1 O LEU A 276 N PHE A 246 SHEET 3 AA3 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 AA4 4 GLY A 306 SER A 310 0 SHEET 2 AA4 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 AA4 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 AA4 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 AA5 5 LEU A 392 ILE A 400 0 SHEET 2 AA5 5 LYS A 407 GLU A 415 -1 O LEU A 410 N ALA A 397 SHEET 3 AA5 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 AA5 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 AA5 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 AA6 2 THR A 508 LEU A 509 0 SHEET 2 AA6 2 THR A 614 ALA A 615 1 O ALA A 615 N THR A 508 SHEET 1 AA7 4 SER A 716 PHE A 721 0 SHEET 2 AA7 4 GLN A 666 TYR A 674 -1 N TYR A 667 O PHE A 721 SHEET 3 AA7 4 HIS A 653 ASP A 661 -1 N LYS A 657 O HIS A 670 SHEET 4 AA7 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 AA8 3 THR A 708 LEU A 712 0 SHEET 2 AA8 3 ILE A 689 ILE A 696 -1 N ILE A 691 O LEU A 710 SHEET 3 AA8 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK NE2 HIS A 496 ZN ZN A1102 1555 1555 2.07 LINK NE2 HIS A 500 ZN ZN A1102 1555 1555 2.12 LINK OE1 GLU A 519 ZN ZN A1102 1555 1555 2.12 LINK O 4TL A1101 ZN ZN A1102 1555 1555 2.17 LINK OAF 4TL A1101 ZN ZN A1102 1555 1555 2.27 LINK MG MG A1103 O HOH A1331 1555 1555 2.10 LINK MG MG A1103 O HOH A2012 1555 1555 2.32 LINK MG MG A1103 O HOH A1423 1555 1555 2.23 LINK MG MG A1103 O HOH A1502 1555 1555 2.15 LINK MG MG A1103 O HOH A2122 1555 1555 2.32 CISPEP 1 GLU A 319 ALA A 320 0 -0.56 SITE 1 AC1 19 THR A 305 GLN A 317 GLU A 319 ALA A 320 SITE 2 AC1 19 ASN A 458 VAL A 459 GLY A 460 ALA A 461 SITE 3 AC1 19 GLU A 463 ARG A 489 HIS A 496 GLU A 497 SITE 4 AC1 19 HIS A 500 GLU A 519 GLU A 572 TYR A 575 SITE 5 AC1 19 TYR A 580 MET A1034 ZN A1102 SITE 1 AC2 4 HIS A 496 HIS A 500 GLU A 519 4TL A1101 SITE 1 AC3 5 HOH A1331 HOH A1423 HOH A1502 HOH A2012 SITE 2 AC3 5 HOH A2122 SITE 1 AC4 3 GLU A 699 ASN A 700 TYR A 757 SITE 1 AC5 8 ASN A 573 THR A 576 THR A1037 GLN A1038 SITE 2 AC5 8 TYR A1077 HOH A1302 HOH A1369 HOH A1585 SITE 1 AC6 8 HIS A 653 LYS A 676 TYR A 741 ASN A 835 SITE 2 AC6 8 PHE A 836 HOH A1290 HOH A1405 HOH A1440 SITE 1 AC7 6 TYR A 853 SER A 903 TYR A 938 DMS A1110 SITE 2 AC7 6 HOH A1713 HOH A1796 SITE 1 AC8 5 ASP A 758 SER A 759 ALA A 761 ARG A 764 SITE 2 AC8 5 HOH A1803 SITE 1 AC9 4 SER A 822 TYR A 823 SER A 826 THR A 900 SITE 1 AD1 4 SER A 826 TYR A 853 SER A 903 GOL A1107 CRYST1 75.150 109.190 118.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008415 0.00000 MASTER 421 0 10 39 31 0 19 6 0 0 0 69 END