HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 10-MAY-15 4ZQN TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE TITLE 2 DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS IN THE COMPLEX WITH IMP TITLE 3 AND THE INHIBITOR P41 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE,INOSINE-5'- COMPND 3 MONOPHOSPHATE DEHYDROGENASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 1-125 AND 253-529 LINKED BY LINKER (GLY GLY); COMPND 6 SYNONYM: IMPDH; COMPND 7 EC: 1.1.1.205,1.1.1.205; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: GUAB, GUAB2, RV3411C, MTCY78.17; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS IMPDH, DELTA CBS, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 2 OF INFECTIOUS DISEASES, CSGID, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.MAKOWSKA-GRZYSKA,M.GU,M.KAVITHA,L.HEDSTROM,W.F.ANDERSON, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 22-NOV-17 4ZQN 1 REMARK REVDAT 3 08-FEB-17 4ZQN 1 AUTHOR REVDAT 2 16-DEC-15 4ZQN 1 JRNL REVDAT 1 17-JUN-15 4ZQN 0 JRNL AUTH M.MAKOWSKA-GRZYSKA,Y.KIM,S.K.GORLA,Y.WEI,K.MANDAPATI, JRNL AUTH 2 M.ZHANG,N.MALTSEVA,G.MODI,H.I.BOSHOFF,M.GU,C.ALDRICH, JRNL AUTH 3 G.D.CUNY,L.HEDSTROM,A.JOACHIMIAK JRNL TITL MYCOBACTERIUM TUBERCULOSIS IMPDH IN COMPLEXES WITH JRNL TITL 2 SUBSTRATES, PRODUCTS AND ANTITUBERCULAR COMPOUNDS. JRNL REF PLOS ONE V. 10 38976 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26440283 JRNL DOI 10.1371/JOURNAL.PONE.0138976 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1621 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 21390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6793 - 3.9911 0.99 2628 127 0.1459 0.1789 REMARK 3 2 3.9911 - 3.1685 1.00 2627 120 0.1688 0.1928 REMARK 3 3 3.1685 - 2.7681 1.00 2590 156 0.1850 0.2175 REMARK 3 4 2.7681 - 2.5151 1.00 2592 139 0.1820 0.2829 REMARK 3 5 2.5151 - 2.3349 1.00 2595 154 0.1987 0.2512 REMARK 3 6 2.3349 - 2.1972 0.99 2561 148 0.2638 0.3135 REMARK 3 7 2.1972 - 2.0872 0.96 2488 137 0.2510 0.2881 REMARK 3 8 2.0872 - 2.0000 0.85 2219 109 0.2818 0.3382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2617 REMARK 3 ANGLE : 1.209 3564 REMARK 3 CHIRALITY : 0.074 426 REMARK 3 PLANARITY : 0.006 464 REMARK 3 DIHEDRAL : 14.709 944 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 28 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9650 -30.2991 -8.4088 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.3586 REMARK 3 T33: 0.4323 T12: -0.0113 REMARK 3 T13: 0.0269 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.9816 L22: 1.0375 REMARK 3 L33: 0.4586 L12: -0.5031 REMARK 3 L13: 0.0109 L23: -0.1293 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.1892 S13: -0.1079 REMARK 3 S21: -0.1099 S22: 0.0443 S23: -0.1177 REMARK 3 S31: 0.0289 S32: 0.0417 S33: -0.0169 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 83 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0670 -10.6195 10.2768 REMARK 3 T TENSOR REMARK 3 T11: 0.3981 T22: 0.3725 REMARK 3 T33: 0.5696 T12: -0.0228 REMARK 3 T13: -0.0466 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 2.3143 L22: 2.7611 REMARK 3 L33: 1.6194 L12: -0.5925 REMARK 3 L13: -0.2275 L23: -0.3747 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: -0.3201 S13: 0.5721 REMARK 3 S21: 0.4134 S22: 0.0277 S23: -0.5360 REMARK 3 S31: -0.3932 S32: 0.0780 S33: -0.0057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 126 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0480 -2.7184 2.4168 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.2948 REMARK 3 T33: 0.6658 T12: -0.0240 REMARK 3 T13: 0.0265 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 4.1841 L22: 4.0742 REMARK 3 L33: 3.8912 L12: -0.7232 REMARK 3 L13: 1.5567 L23: -1.0808 REMARK 3 S TENSOR REMARK 3 S11: -0.1508 S12: -0.0668 S13: 0.8957 REMARK 3 S21: 0.1067 S22: 0.0126 S23: 0.0774 REMARK 3 S31: -0.5594 S32: -0.0775 S33: 0.0570 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 275 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4701 -6.4157 -5.8386 REMARK 3 T TENSOR REMARK 3 T11: 0.3541 T22: 0.2560 REMARK 3 T33: 0.5179 T12: -0.0159 REMARK 3 T13: -0.0099 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 5.6170 L22: 1.6684 REMARK 3 L33: 1.7373 L12: 2.5004 REMARK 3 L13: 1.5180 L23: 1.5399 REMARK 3 S TENSOR REMARK 3 S11: 0.2338 S12: -0.0666 S13: 0.2572 REMARK 3 S21: -0.0500 S22: -0.1650 S23: -0.1527 REMARK 3 S31: -0.0162 S32: -0.1069 S33: -0.0669 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 304 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8150 -21.8316 0.2659 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.2420 REMARK 3 T33: 0.3985 T12: 0.0005 REMARK 3 T13: -0.0111 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.3922 L22: 1.2791 REMARK 3 L33: 1.8009 L12: 0.0423 REMARK 3 L13: -0.1525 L23: 0.7331 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.1277 S13: -0.0421 REMARK 3 S21: 0.0602 S22: 0.0121 S23: -0.1871 REMARK 3 S31: 0.0355 S32: 0.0928 S33: -0.0210 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 423 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2426 -18.8820 14.1305 REMARK 3 T TENSOR REMARK 3 T11: 0.4753 T22: 0.4524 REMARK 3 T33: 0.6315 T12: 0.0214 REMARK 3 T13: -0.0409 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 4.6155 L22: 0.8267 REMARK 3 L33: 1.4199 L12: -1.6441 REMARK 3 L13: 1.6373 L23: -0.6943 REMARK 3 S TENSOR REMARK 3 S11: -0.1452 S12: -0.7842 S13: 0.0029 REMARK 3 S21: 0.3912 S22: 0.3151 S23: 0.3940 REMARK 3 S31: -0.2837 S32: -0.4146 S33: -0.1567 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 470 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5305 -32.6090 3.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.3560 T22: 0.3647 REMARK 3 T33: 0.5026 T12: 0.0068 REMARK 3 T13: -0.0564 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.7560 L22: 4.4644 REMARK 3 L33: 4.0014 L12: -0.7971 REMARK 3 L13: -1.3821 L23: 3.3696 REMARK 3 S TENSOR REMARK 3 S11: -0.1253 S12: -0.2860 S13: 0.2282 REMARK 3 S21: 0.2182 S22: 0.1475 S23: -0.4182 REMARK 3 S31: -0.0990 S32: 0.3338 S33: -0.0195 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 489 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0256 -40.5392 0.8631 REMARK 3 T TENSOR REMARK 3 T11: 0.6300 T22: 0.6013 REMARK 3 T33: 0.6718 T12: 0.0021 REMARK 3 T13: 0.0311 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 4.4769 L22: 3.4267 REMARK 3 L33: 1.8383 L12: 1.4642 REMARK 3 L13: 0.3068 L23: 0.2578 REMARK 3 S TENSOR REMARK 3 S11: 0.3389 S12: -1.2414 S13: -0.2332 REMARK 3 S21: 1.1108 S22: -0.1141 S23: 0.1589 REMARK 3 S31: 0.3476 S32: 0.0572 S33: -0.1985 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97899 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MAGNESIUM FORMATE, 0.1 M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.96850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.96850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.37900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.96850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.96850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.37900 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.96850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 43.96850 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.37900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 43.96850 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.96850 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.37900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -87.93700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -87.93700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -87.93700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -87.93700 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 GLY A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 GLU A 9 REMARK 465 ASP A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 TYR A 19 REMARK 465 VAL A 20 REMARK 465 ARG A 21 REMARK 465 MET A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 LEU A 25 REMARK 465 THR A 26 REMARK 465 THR A 27 REMARK 465 GLY A 432 REMARK 465 ARG A 433 REMARK 465 GLY A 434 REMARK 465 GLY A 435 REMARK 465 ALA A 436 REMARK 465 THR A 437 REMARK 465 SER A 438 REMARK 465 TYR A 439 REMARK 465 SER A 440 REMARK 465 LYS A 441 REMARK 465 ASP A 442 REMARK 465 ARG A 443 REMARK 465 TYR A 444 REMARK 465 PHE A 445 REMARK 465 ALA A 446 REMARK 465 ASP A 447 REMARK 465 ASP A 448 REMARK 465 ALA A 449 REMARK 465 LEU A 450 REMARK 465 SER A 451 REMARK 465 GLU A 452 REMARK 465 TYR A 527 REMARK 465 ALA A 528 REMARK 465 ARG A 529 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 88 -55.48 -124.92 REMARK 500 VAL A 303 -63.23 -91.54 REMARK 500 PHE A 412 65.82 -117.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4QO A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZQM RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE COMPLEX WITH XMP AND NAD REMARK 900 RELATED ID: CSGID-IDP91646 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4ZQO RELATED DB: PDB REMARK 900 RELATED ID: 4ZQP RELATED DB: PDB REMARK 900 RELATED ID: 4ZQR RELATED DB: PDB DBREF 4ZQN A 1 125 UNP P9WKI7 IMDH_MYCTU 1 125 DBREF 4ZQN A 253 529 UNP P9WKI7 IMDH_MYCTU 253 529 SEQADV 4ZQN SER A -2 UNP P9WKI7 EXPRESSION TAG SEQADV 4ZQN ASN A -1 UNP P9WKI7 EXPRESSION TAG SEQADV 4ZQN ALA A 0 UNP P9WKI7 EXPRESSION TAG SEQADV 4ZQN GLY A 126 UNP P9WKI7 LINKER SEQADV 4ZQN GLY A 127 UNP P9WKI7 LINKER SEQRES 1 A 407 SER ASN ALA MET SER ARG GLY MET SER GLY LEU GLU ASP SEQRES 2 A 407 SER SER ASP LEU VAL VAL SER PRO TYR VAL ARG MET GLY SEQRES 3 A 407 GLY LEU THR THR ASP PRO VAL PRO THR GLY GLY ASP ASP SEQRES 4 A 407 PRO HIS LYS VAL ALA MET LEU GLY LEU THR PHE ASP ASP SEQRES 5 A 407 VAL LEU LEU LEU PRO ALA ALA SER ASP VAL VAL PRO ALA SEQRES 6 A 407 THR ALA ASP THR SER SER GLN LEU THR LYS LYS ILE ARG SEQRES 7 A 407 LEU LYS VAL PRO LEU VAL SER SER ALA MET ASP THR VAL SEQRES 8 A 407 THR GLU SER ARG MET ALA ILE ALA MET ALA ARG ALA GLY SEQRES 9 A 407 GLY MET GLY VAL LEU HIS ARG ASN LEU PRO VAL ALA GLU SEQRES 10 A 407 GLN ALA GLY GLN VAL GLU MET VAL LYS ARG SER GLY GLY SEQRES 11 A 407 LEU LEU VAL GLY ALA ALA VAL GLY VAL GLY GLY ASP ALA SEQRES 12 A 407 TRP VAL ARG ALA MET MET LEU VAL ASP ALA GLY VAL ASP SEQRES 13 A 407 VAL LEU VAL VAL ASP THR ALA HIS ALA HIS ASN ARG LEU SEQRES 14 A 407 VAL LEU ASP MET VAL GLY LYS LEU LYS SER GLU VAL GLY SEQRES 15 A 407 ASP ARG VAL GLU VAL VAL GLY GLY ASN VAL ALA THR ARG SEQRES 16 A 407 SER ALA ALA ALA ALA LEU VAL ASP ALA GLY ALA ASP ALA SEQRES 17 A 407 VAL LYS VAL GLY VAL GLY PRO GLY SER ILE CYS THR THR SEQRES 18 A 407 ARG VAL VAL ALA GLY VAL GLY ALA PRO GLN ILE THR ALA SEQRES 19 A 407 ILE LEU GLU ALA VAL ALA ALA CYS ARG PRO ALA GLY VAL SEQRES 20 A 407 PRO VAL ILE ALA ASP GLY GLY LEU GLN TYR SER GLY ASP SEQRES 21 A 407 ILE ALA LYS ALA LEU ALA ALA GLY ALA SER THR ALA MET SEQRES 22 A 407 LEU GLY SER LEU LEU ALA GLY THR ALA GLU ALA PRO GLY SEQRES 23 A 407 GLU LEU ILE PHE VAL ASN GLY LYS GLN TYR LYS SER TYR SEQRES 24 A 407 ARG GLY MET GLY SER LEU GLY ALA MET ARG GLY ARG GLY SEQRES 25 A 407 GLY ALA THR SER TYR SER LYS ASP ARG TYR PHE ALA ASP SEQRES 26 A 407 ASP ALA LEU SER GLU ASP LYS LEU VAL PRO GLU GLY ILE SEQRES 27 A 407 GLU GLY ARG VAL PRO PHE ARG GLY PRO LEU SER SER VAL SEQRES 28 A 407 ILE HIS GLN LEU THR GLY GLY LEU ARG ALA ALA MET GLY SEQRES 29 A 407 TYR THR GLY SER PRO THR ILE GLU VAL LEU GLN GLN ALA SEQRES 30 A 407 GLN PHE VAL ARG ILE THR PRO ALA GLY LEU LYS GLU SER SEQRES 31 A 407 HIS PRO HIS ASP VAL ALA MET THR VAL GLU ALA PRO ASN SEQRES 32 A 407 TYR TYR ALA ARG HET IMP A 601 23 HET 4QO A 602 28 HETNAM IMP INOSINIC ACID HETNAM 4QO 2-CHLORO-N,N-DIMETHYL-5-[({2-[3-(PROP-1-EN-2-YL) HETNAM 2 4QO PHENYL]PROPAN-2-YL}CARBAMOYL)AMINO]BENZAMIDE FORMUL 2 IMP C10 H13 N4 O8 P FORMUL 3 4QO C22 H26 CL N3 O2 FORMUL 4 HOH *118(H2 O) HELIX 1 AA1 THR A 46 ASP A 48 5 3 HELIX 2 AA2 VAL A 60 ALA A 64 5 5 HELIX 3 AA3 GLU A 90 ALA A 100 1 11 HELIX 4 AA4 PRO A 111 ARG A 124 1 14 HELIX 5 AA5 GLY A 262 ALA A 275 1 14 HELIX 6 AA6 ASN A 289 GLY A 304 1 16 HELIX 7 AA7 THR A 316 GLY A 327 1 12 HELIX 8 AA8 THR A 342 ALA A 347 1 6 HELIX 9 AA9 PRO A 352 ARG A 365 1 14 HELIX 10 AB1 PRO A 366 GLY A 368 5 3 HELIX 11 AB2 TYR A 379 ALA A 389 1 11 HELIX 12 AB3 GLY A 397 GLY A 402 1 6 HELIX 13 AB4 SER A 426 ARG A 431 1 6 HELIX 14 AB5 PRO A 469 GLY A 489 1 21 HELIX 15 AB6 THR A 492 GLN A 497 1 6 HELIX 16 AB7 THR A 505 HIS A 513 1 9 SHEET 1 AA1 2 VAL A 50 LEU A 52 0 SHEET 2 AA1 2 PHE A 501 ARG A 503 -1 O VAL A 502 N LEU A 51 SHEET 1 AA2 2 SER A 68 GLN A 69 0 SHEET 2 AA2 2 ARG A 75 LEU A 76 -1 O LEU A 76 N SER A 68 SHEET 1 AA3 9 LEU A 80 SER A 82 0 SHEET 2 AA3 9 MET A 103 LEU A 106 1 O MET A 103 N SER A 82 SHEET 3 AA3 9 GLY A 256 VAL A 259 1 O GLY A 256 N LEU A 106 SHEET 4 AA3 9 VAL A 279 ASP A 283 1 O VAL A 281 N ALA A 257 SHEET 5 AA3 9 GLU A 308 VAL A 314 1 O GLU A 308 N LEU A 280 SHEET 6 AA3 9 ALA A 330 VAL A 333 1 O LYS A 332 N GLY A 311 SHEET 7 AA3 9 VAL A 371 ASP A 374 1 O ILE A 372 N VAL A 333 SHEET 8 AA3 9 THR A 393 LEU A 396 1 O MET A 395 N ALA A 373 SHEET 9 AA3 9 LEU A 80 SER A 82 1 N VAL A 81 O LEU A 396 SHEET 1 AA4 3 LEU A 410 VAL A 413 0 SHEET 2 AA4 3 LYS A 416 ARG A 422 -1 O TYR A 418 N ILE A 411 SHEET 3 AA4 3 GLU A 461 PRO A 465 -1 O GLY A 462 N TYR A 421 CISPEP 1 GLY A 312 ASN A 313 0 0.96 SITE 1 AC1 25 SER A 83 MET A 85 ASN A 313 GLY A 338 SITE 2 AC1 25 SER A 339 ILE A 340 CYS A 341 ASP A 374 SITE 3 AC1 25 GLY A 375 GLY A 376 MET A 395 GLY A 397 SITE 4 AC1 25 SER A 398 TYR A 421 GLY A 423 MET A 424 SITE 5 AC1 25 GLY A 425 GLU A 458 GLY A 459 4QO A 602 SITE 6 AC1 25 HOH A 728 HOH A 748 HOH A 777 HOH A 780 SITE 7 AC1 25 HOH A 783 SITE 1 AC2 12 VAL A 59 ALA A 285 HIS A 286 THR A 343 SITE 2 AC2 12 GLY A 425 MET A 430 VAL A 456 GLU A 458 SITE 3 AC2 12 GLY A 486 TYR A 487 IMP A 601 HOH A 801 CRYST1 87.937 87.937 84.758 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011798 0.00000 MASTER 442 0 2 16 16 0 10 6 0 0 0 32 END