HEADER HYDROLASE 21-APR-15 4ZFT TITLE CATALYTIC DOMAIN OF SST2 F403W MUTANT BOUND TO UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMSH-LIKE PROTEASE SST2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 245-435; COMPND 5 SYNONYM: SUPPRESSOR OF STE12 DELETION PROTEIN 2; COMPND 6 EC: 3.4.19.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POLYUBIQUITIN-B; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: UNP RESIDUES 77-152; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SST2, SPAC19B12.10; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: UBB; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: ROSETTA; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS HELIX-BETA-HELIX SANDWICH, UBIQUITIN, ZINC METALLOPROTEASE, ENDOSOME, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.N.BUENO REVDAT 4 04-DEC-19 4ZFT 1 REMARK REVDAT 3 20-SEP-17 4ZFT 1 REMARK REVDAT 2 23-AUG-17 4ZFT 1 REMARK REVDAT 1 14-OCT-15 4ZFT 0 JRNL AUTH A.N.BUENO JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF SST2 MUTANT F403W BOUND JRNL TITL 2 TO UBIQUITIN AT 2.3 ANGSTROMS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2019 - 4.9617 1.00 2738 160 0.1569 0.1666 REMARK 3 2 4.9617 - 3.9388 1.00 2643 138 0.1420 0.1506 REMARK 3 3 3.9388 - 3.4410 1.00 2590 128 0.1822 0.2940 REMARK 3 4 3.4410 - 3.1265 1.00 2603 129 0.2073 0.2747 REMARK 3 5 3.1265 - 2.9024 1.00 2581 128 0.2326 0.2998 REMARK 3 6 2.9024 - 2.7313 1.00 2535 142 0.2364 0.2821 REMARK 3 7 2.7313 - 2.5945 1.00 2552 137 0.2444 0.2572 REMARK 3 8 2.5945 - 2.4816 1.00 2541 148 0.2517 0.3521 REMARK 3 9 2.4816 - 2.3861 1.00 2557 126 0.2654 0.3393 REMARK 3 10 2.3861 - 2.3037 0.97 2450 127 0.2818 0.3413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4155 REMARK 3 ANGLE : 1.156 5627 REMARK 3 CHIRALITY : 0.044 666 REMARK 3 PLANARITY : 0.005 711 REMARK 3 DIHEDRAL : 13.779 1537 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 71.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4K1R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (0.04 M CITRIC ACID, 0.06 M BIS-TRIS REMARK 280 PROPANE), 20% W/V PEG 3,350, PH 6.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.41000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.91100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.69850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.91100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.69850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 239 REMARK 465 PRO A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 SER A 243 REMARK 465 MET A 244 REMARK 465 ALA A 245 REMARK 465 GLY A 246 REMARK 465 THR A 247 REMARK 465 PHE A 248 REMARK 465 VAL A 434 REMARK 465 LYS A 435 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY C 239 REMARK 465 PRO C 240 REMARK 465 LEU C 241 REMARK 465 GLY C 242 REMARK 465 SER C 243 REMARK 465 MET C 244 REMARK 465 ALA C 245 REMARK 465 GLY C 246 REMARK 465 THR C 247 REMARK 465 PHE C 248 REMARK 465 LYS C 249 REMARK 465 ILE C 250 REMARK 465 VAL C 434 REMARK 465 LYS C 435 REMARK 465 GLY D -4 REMARK 465 PRO D -3 REMARK 465 LEU D -2 REMARK 465 GLY D -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 ASP A 321 CG OD1 OD2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LEU C 268 CG CD1 CD2 REMARK 470 LYS C 271 CG CD CE NZ REMARK 470 LYS C 278 CG CD CE NZ REMARK 470 LYS C 282 CG CD CE NZ REMARK 470 ARG C 296 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 327 CG CD OE1 OE2 REMARK 470 GLU C 389 CG CD OE1 OE2 REMARK 470 ARG C 421 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 63 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP D 39 O HOH D 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 313 -167.08 -126.66 REMARK 500 THR A 320 -38.26 -130.09 REMARK 500 ALA A 374 79.04 -110.62 REMARK 500 ASN A 378 34.82 39.54 REMARK 500 GLN C 297 92.47 37.96 REMARK 500 ASN C 298 36.08 20.45 REMARK 500 ASP C 321 78.13 -151.84 REMARK 500 GLN C 346 -168.05 -107.89 REMARK 500 CYS C 348 99.26 -69.17 REMARK 500 ALA C 374 77.35 -112.26 REMARK 500 VAL C 410 -57.51 62.99 REMARK 500 ASP D 52 -33.77 -39.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 341 NE2 REMARK 620 2 HIS A 343 NE2 109.5 REMARK 620 3 ASP A 354 OD2 107.1 120.0 REMARK 620 4 GLY B 76 OXT 83.4 103.3 126.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 356 NE2 REMARK 620 2 CYS A 397 SG 108.7 REMARK 620 3 HIS A 404 NE2 107.4 110.6 REMARK 620 4 HIS A 406 NE2 117.4 106.9 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 341 NE2 REMARK 620 2 HIS C 343 NE2 98.5 REMARK 620 3 ASP C 354 OD2 107.2 142.8 REMARK 620 4 GLY D 76 O 106.2 83.6 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 356 NE2 REMARK 620 2 CYS C 397 SG 115.1 REMARK 620 3 HIS C 404 NE2 106.8 108.3 REMARK 620 4 HIS C 406 NE2 109.7 114.0 101.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K1R RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF SST2 BOUND TO UBIQUITIN REMARK 900 RELATED ID: 4MSQ RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF SST2 BOUND TO UBIQUITIN REMARK 900 RELATED ID: 4MSM RELATED DB: PDB REMARK 900 CATALYTIC MUTANT OF SST2 E286A BOUND TO UBIQUITIN REMARK 900 RELATED ID: 2ZNV RELATED DB: PDB REMARK 900 AMSH-LP E292A BOUND TO LYS63-LINKED UBIQUITIN DIMER REMARK 900 RELATED ID: 4ZFR RELATED DB: PDB DBREF 4ZFT A 245 435 UNP Q9P371 SST2_SCHPO 245 435 DBREF 4ZFT B 1 76 UNP P0CG47 UBB_HUMAN 77 152 DBREF 4ZFT C 245 435 UNP Q9P371 SST2_SCHPO 245 435 DBREF 4ZFT D 1 76 UNP P0CG47 UBB_HUMAN 77 152 SEQADV 4ZFT GLY A 239 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT PRO A 240 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT LEU A 241 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT GLY A 242 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT SER A 243 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT MET A 244 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT TRP A 403 UNP Q9P371 PHE 403 ENGINEERED MUTATION SEQADV 4ZFT GLY B -4 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT PRO B -3 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT LEU B -2 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT GLY B -1 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT SER B 0 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT GLY C 239 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT PRO C 240 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT LEU C 241 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT GLY C 242 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT SER C 243 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT MET C 244 UNP Q9P371 EXPRESSION TAG SEQADV 4ZFT TRP C 403 UNP Q9P371 PHE 403 ENGINEERED MUTATION SEQADV 4ZFT GLY D -4 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT PRO D -3 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT LEU D -2 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT GLY D -1 UNP P0CG47 EXPRESSION TAG SEQADV 4ZFT SER D 0 UNP P0CG47 EXPRESSION TAG SEQRES 1 A 197 GLY PRO LEU GLY SER MET ALA GLY THR PHE LYS ILE HIS SEQRES 2 A 197 ALA TYR THR GLU GLY GLY LYS PRO LEU ARG THR ILE TYR SEQRES 3 A 197 LEU PRO LYS LEU LEU LYS LYS VAL PHE LEU ASP VAL VAL SEQRES 4 A 197 LYS PRO ASN THR LYS LYS ASN LEU GLU THR CYS GLY ILE SEQRES 5 A 197 LEU CYS GLY LYS LEU ARG GLN ASN ALA PHE PHE ILE THR SEQRES 6 A 197 HIS LEU VAL ILE PRO LEU GLN GLU ALA THR SER ASP THR SEQRES 7 A 197 CYS GLY THR THR ASP GLU ALA SER LEU PHE GLU PHE GLN SEQRES 8 A 197 ASP LYS HIS ASN LEU LEU THR LEU GLY TRP ILE HIS THR SEQRES 9 A 197 HIS PRO THR GLN THR CYS PHE MET SER SER VAL ASP LEU SEQRES 10 A 197 HIS THR HIS CYS SER TYR GLN LEU MET LEU PRO GLU ALA SEQRES 11 A 197 ILE ALA ILE VAL MET ALA PRO SER LYS ASN THR SER GLY SEQRES 12 A 197 ILE PHE ARG LEU LEU ASP PRO GLU GLY LEU GLN THR ILE SEQRES 13 A 197 VAL LYS CYS ARG LYS PRO GLY LEU TRP HIS PRO HIS GLU SEQRES 14 A 197 GLY LYS VAL TYR THR MET VAL ALA GLN PRO GLY HIS VAL SEQRES 15 A 197 ARG GLU ILE ASN SER LYS LEU GLN VAL VAL ASP LEU ARG SEQRES 16 A 197 VAL LYS SEQRES 1 B 81 GLY PRO LEU GLY SER MET GLN ILE PHE VAL LYS THR LEU SEQRES 2 B 81 THR GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP SEQRES 3 B 81 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 B 81 GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY SEQRES 5 B 81 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 B 81 ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU SEQRES 7 B 81 ARG GLY GLY SEQRES 1 C 197 GLY PRO LEU GLY SER MET ALA GLY THR PHE LYS ILE HIS SEQRES 2 C 197 ALA TYR THR GLU GLY GLY LYS PRO LEU ARG THR ILE TYR SEQRES 3 C 197 LEU PRO LYS LEU LEU LYS LYS VAL PHE LEU ASP VAL VAL SEQRES 4 C 197 LYS PRO ASN THR LYS LYS ASN LEU GLU THR CYS GLY ILE SEQRES 5 C 197 LEU CYS GLY LYS LEU ARG GLN ASN ALA PHE PHE ILE THR SEQRES 6 C 197 HIS LEU VAL ILE PRO LEU GLN GLU ALA THR SER ASP THR SEQRES 7 C 197 CYS GLY THR THR ASP GLU ALA SER LEU PHE GLU PHE GLN SEQRES 8 C 197 ASP LYS HIS ASN LEU LEU THR LEU GLY TRP ILE HIS THR SEQRES 9 C 197 HIS PRO THR GLN THR CYS PHE MET SER SER VAL ASP LEU SEQRES 10 C 197 HIS THR HIS CYS SER TYR GLN LEU MET LEU PRO GLU ALA SEQRES 11 C 197 ILE ALA ILE VAL MET ALA PRO SER LYS ASN THR SER GLY SEQRES 12 C 197 ILE PHE ARG LEU LEU ASP PRO GLU GLY LEU GLN THR ILE SEQRES 13 C 197 VAL LYS CYS ARG LYS PRO GLY LEU TRP HIS PRO HIS GLU SEQRES 14 C 197 GLY LYS VAL TYR THR MET VAL ALA GLN PRO GLY HIS VAL SEQRES 15 C 197 ARG GLU ILE ASN SER LYS LEU GLN VAL VAL ASP LEU ARG SEQRES 16 C 197 VAL LYS SEQRES 1 D 81 GLY PRO LEU GLY SER MET GLN ILE PHE VAL LYS THR LEU SEQRES 2 D 81 THR GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP SEQRES 3 D 81 THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU SEQRES 4 D 81 GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY SEQRES 5 D 81 LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN SEQRES 6 D 81 ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU SEQRES 7 D 81 ARG GLY GLY HET ZN A 501 1 HET ZN A 502 1 HET EDO A 503 4 HET EDO B 101 4 HET EDO B 102 4 HET ZN C 501 1 HET ZN C 502 1 HET EDO C 503 4 HET EDO D 101 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ZN 4(ZN 2+) FORMUL 7 EDO 5(C2 H6 O2) FORMUL 14 HOH *79(H2 O) HELIX 1 AA1 LYS A 267 LYS A 283 1 17 HELIX 2 AA2 ASP A 321 HIS A 332 1 12 HELIX 3 AA3 SER A 351 LEU A 365 1 15 HELIX 4 AA4 PRO A 375 ASN A 378 5 4 HELIX 5 AA5 PRO A 388 CYS A 397 1 10 HELIX 6 AA6 THR B 22 GLY B 35 1 14 HELIX 7 AA7 PRO B 37 ASP B 39 5 3 HELIX 8 AA8 LYS C 267 LYS C 283 1 17 HELIX 9 AA9 ASP C 321 HIS C 332 1 12 HELIX 10 AB1 SER C 351 LEU C 365 1 15 HELIX 11 AB2 PRO C 375 ASN C 378 5 4 HELIX 12 AB3 PRO C 388 CYS C 397 1 10 HELIX 13 AB4 THR D 22 GLY D 35 1 14 HELIX 14 AB5 PRO D 37 ASP D 39 5 3 SHEET 1 AA1 2 ALA A 252 TYR A 253 0 SHEET 2 AA1 2 PRO A 259 LEU A 260 -1 O LEU A 260 N ALA A 252 SHEET 1 AA2 8 TYR A 411 MET A 413 0 SHEET 2 AA2 8 THR A 379 LEU A 385 -1 N ARG A 384 O THR A 412 SHEET 3 AA2 8 ILE A 369 ALA A 374 -1 N VAL A 372 O GLY A 381 SHEET 4 AA2 8 LEU A 335 THR A 342 1 N TRP A 339 O ILE A 371 SHEET 5 AA2 8 CYS A 288 ARG A 296 -1 N LEU A 291 O LEU A 337 SHEET 6 AA2 8 ALA A 299 ILE A 307 -1 O ALA A 299 N ARG A 296 SHEET 7 AA2 8 THR A 262 PRO A 266 1 N THR A 262 O PHE A 300 SHEET 8 AA2 8 VAL A 420 ILE A 423 1 O ILE A 423 N LEU A 265 SHEET 1 AA3 7 TYR A 411 MET A 413 0 SHEET 2 AA3 7 THR A 379 LEU A 385 -1 N ARG A 384 O THR A 412 SHEET 3 AA3 7 ILE A 369 ALA A 374 -1 N VAL A 372 O GLY A 381 SHEET 4 AA3 7 LEU A 335 THR A 342 1 N TRP A 339 O ILE A 371 SHEET 5 AA3 7 CYS A 288 ARG A 296 -1 N LEU A 291 O LEU A 337 SHEET 6 AA3 7 ALA A 299 ILE A 307 -1 O ALA A 299 N ARG A 296 SHEET 7 AA3 7 GLN A 428 ASP A 431 1 O VAL A 430 N ILE A 307 SHEET 1 AA4 3 GLN A 310 ALA A 312 0 SHEET 2 AA4 3 CYS A 317 THR A 319 -1 O GLY A 318 N GLU A 311 SHEET 3 AA4 3 ARG B 74 GLY B 75 -1 O GLY B 75 N CYS A 317 SHEET 1 AA5 5 THR B 12 VAL B 17 0 SHEET 2 AA5 5 MET B 1 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA5 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA5 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA5 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA6 8 TYR C 411 MET C 413 0 SHEET 2 AA6 8 THR C 379 LEU C 385 -1 N ARG C 384 O THR C 412 SHEET 3 AA6 8 ILE C 369 ALA C 374 -1 N ALA C 370 O PHE C 383 SHEET 4 AA6 8 LEU C 335 THR C 342 1 N TRP C 339 O ILE C 371 SHEET 5 AA6 8 CYS C 288 LEU C 295 -1 N LEU C 291 O LEU C 337 SHEET 6 AA6 8 ALA C 299 ILE C 307 -1 O VAL C 306 N ILE C 290 SHEET 7 AA6 8 THR C 262 PRO C 266 1 N TYR C 264 O PHE C 300 SHEET 8 AA6 8 VAL C 420 ILE C 423 1 O ARG C 421 N LEU C 265 SHEET 1 AA7 7 TYR C 411 MET C 413 0 SHEET 2 AA7 7 THR C 379 LEU C 385 -1 N ARG C 384 O THR C 412 SHEET 3 AA7 7 ILE C 369 ALA C 374 -1 N ALA C 370 O PHE C 383 SHEET 4 AA7 7 LEU C 335 THR C 342 1 N TRP C 339 O ILE C 371 SHEET 5 AA7 7 CYS C 288 LEU C 295 -1 N LEU C 291 O LEU C 337 SHEET 6 AA7 7 ALA C 299 ILE C 307 -1 O VAL C 306 N ILE C 290 SHEET 7 AA7 7 GLN C 428 ASP C 431 1 O VAL C 430 N ILE C 307 SHEET 1 AA8 3 GLN C 310 ALA C 312 0 SHEET 2 AA8 3 CYS C 317 THR C 319 -1 O GLY C 318 N GLU C 311 SHEET 3 AA8 3 ARG D 74 GLY D 75 -1 O GLY D 75 N CYS C 317 SHEET 1 AA9 5 THR D 12 VAL D 17 0 SHEET 2 AA9 5 MET D 1 THR D 7 -1 N MET D 1 O VAL D 17 SHEET 3 AA9 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AA9 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 AA9 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK NE2 HIS A 341 ZN ZN A 501 1555 1555 2.16 LINK NE2 HIS A 343 ZN ZN A 501 1555 1555 2.24 LINK OD2 ASP A 354 ZN ZN A 501 1555 1555 2.10 LINK NE2 HIS A 356 ZN ZN A 502 1555 1555 2.08 LINK SG CYS A 397 ZN ZN A 502 1555 1555 2.33 LINK NE2 HIS A 404 ZN ZN A 502 1555 1555 2.12 LINK NE2 HIS A 406 ZN ZN A 502 1555 1555 2.12 LINK OXT GLY B 76 ZN ZN A 501 1555 1555 1.88 LINK NE2 HIS C 341 ZN ZN C 501 1555 1555 2.20 LINK NE2 HIS C 343 ZN ZN C 501 1555 1555 2.01 LINK OD2 ASP C 354 ZN ZN C 501 1555 1555 1.88 LINK NE2 HIS C 356 ZN ZN C 502 1555 1555 2.02 LINK SG CYS C 397 ZN ZN C 502 1555 1555 2.32 LINK NE2 HIS C 404 ZN ZN C 502 1555 1555 2.09 LINK NE2 HIS C 406 ZN ZN C 502 1555 1555 2.00 LINK O GLY D 76 ZN ZN C 501 1555 1555 1.76 CISPEP 1 ASP A 387 PRO A 388 0 11.62 CISPEP 2 GLN A 416 PRO A 417 0 2.98 CISPEP 3 ASP C 387 PRO C 388 0 12.09 CISPEP 4 GLN C 416 PRO C 417 0 12.04 SITE 1 AC1 4 HIS A 341 HIS A 343 ASP A 354 GLY B 76 SITE 1 AC2 4 HIS A 356 CYS A 397 HIS A 404 HIS A 406 SITE 1 AC3 8 ALA A 252 TYR A 253 LEU A 260 ARG A 384 SITE 2 AC3 8 VAL A 414 ALA A 415 HIS A 419 LYS A 426 SITE 1 AC4 6 HOH A 614 THR B 7 LEU B 8 LEU B 69 SITE 2 AC4 6 VAL B 70 LEU B 71 SITE 1 AC5 5 LEU A 334 THR B 7 LEU B 8 THR B 9 SITE 2 AC5 5 GLY B 10 SITE 1 AC6 4 HIS C 341 HIS C 343 ASP C 354 GLY D 76 SITE 1 AC7 4 HIS C 356 CYS C 397 HIS C 404 HIS C 406 SITE 1 AC8 1 TYR C 264 SITE 1 AC9 5 THR D 7 LEU D 8 LEU D 69 VAL D 70 SITE 2 AC9 5 LEU D 71 CRYST1 56.820 89.397 117.822 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008487 0.00000 MASTER 404 0 9 14 48 0 13 6 0 0 0 46 END