HEADER IMMUNE SYSTEM/DNA 08-APR-15 4Z8F TITLE FAB STRUCTURE OF ANTIBODY S1-15 IN COMPLEX WITH SSDNA DNA, 5'-P5(DT)P- TITLE 2 3' COMPND MOL_ID: 1; COMPND 2 MOLECULE: S1-15 FAB (IGG2B) HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S1-15 FAB (IGG2B KAPPA) LIGHT CHAIN; COMPND 6 CHAIN: L; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: 5'-D(P*TP*TP*TP*TP*T)-3'; COMPND 9 CHAIN: E, A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: ASCITES; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: ASCITES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ANTIBODY, FAB, CARBOHYDRATE, LIPID A, DNA, IMMUNE SYSTEM-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.HAJI-GHASSEMI,S.V.EVANS REVDAT 5 08-JAN-20 4Z8F 1 REMARK REVDAT 4 27-SEP-17 4Z8F 1 JRNL REMARK REVDAT 3 26-AUG-15 4Z8F 1 JRNL REVDAT 2 01-JUL-15 4Z8F 1 JRNL REVDAT 1 24-JUN-15 4Z8F 0 JRNL AUTH O.HAJI-GHASSEMI,S.MULLER-LOENNIES,T.RODRIGUEZ,L.BRADE, JRNL AUTH 2 P.KOSMA,H.BRADE,S.V.EVANS JRNL TITL STRUCTURAL BASIS FOR ANTIBODY RECOGNITION OF LIPID A: JRNL TITL 2 INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. JRNL REF J.BIOL.CHEM. V. 290 19629 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26085093 JRNL DOI 10.1074/JBC.M115.657874 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.80073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 46712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3315 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3375 REMARK 3 NUCLEIC ACID ATOMS : 110 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.50000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -2.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3581 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3179 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4896 ; 1.284 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7360 ; 0.780 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.491 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;35.162 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;14.521 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3981 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 2.189 ; 3.845 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1759 ; 2.190 ; 3.843 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2196 ; 3.260 ; 5.756 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 4Z8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DCM WITH CRYO-COOLED 1ST CRYSTAL REMARK 200 SAGITTALLY BENT 2ND CRYSTAL REMARK 200 FOLLOWED BY VERTICALLY FOCUSING REMARK 200 MIRROR REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V703C3 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 36.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4ODT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.075M MAGNESIUM CHLORIDE, 0.1M HEPES REMARK 280 PH 7.5, 28% (V/V) PEG 550 MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.13350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.79250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.79250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.20025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.79250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.79250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.06675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.79250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.79250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.20025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.79250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.79250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.06675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.13350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 213 REMARK 465 THP E 14 REMARK 465 DT A 4 REMARK 465 DT A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT E 13 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT E 13 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT E 13 C7 C6 REMARK 470 DT A 6 P OP1 OP2 O5' C5' C4' O4' REMARK 470 DT A 6 C3' C2' C1' N1 C2 O2 N3 REMARK 470 DT A 6 C4 O4 C5 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT E 10 P DT E 10 OP3 -0.108 REMARK 500 DT A 6 O3' DT A 7 P -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 15 -1.41 71.64 REMARK 500 ASP H 65 -0.37 69.00 REMARK 500 THR L 51 -52.59 69.09 REMARK 500 ALA L 84 171.81 178.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ODT RELATED DB: PDB REMARK 900 FAB OF SAME ANTIBODY IN COMPLEX WITH LIPID A CARBOHYDRATE BACKBONE REMARK 900 RELATED ID: 4ODU RELATED DB: PDB REMARK 900 FAB OF SAME ANTIBODY UNLIGANDED. REMARK 900 RELATED ID: 4Z95 RELATED DB: PDB DBREF 4Z8F H 1 213 PDB 4Z8F 4Z8F 1 213 DBREF 4Z8F L 1 214 PDB 4Z8F 4Z8F 1 214 DBREF 4Z8F E 10 14 PDB 4Z8F 4Z8F 10 14 DBREF 4Z8F A 4 8 PDB 4Z8F 4Z8F 4 8 SEQRES 1 H 227 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 227 PRO LYS GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 227 PHE THR PHE ASN THR TYR ALA MET ASN TRP VAL ARG GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE ARG SEQRES 5 H 227 SER LYS SER ASN ASN TYR ALA THR TYR TYR ALA ASP SER SEQRES 6 H 227 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER GLN SEQRES 7 H 227 SER MET LEU TYR LEU GLN MET ASN ASN LEU LYS THR GLU SEQRES 8 H 227 ASP THR ALA MET TYR TYR CYS VAL ARG HIS ARG GLY ALA SEQRES 9 H 227 PRO LEU TYR TYR GLY ASN GLY ALA TRP PHE ALA TYR TRP SEQRES 10 H 227 GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA LYS THR SEQRES 11 H 227 THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY CYS GLY SEQRES 12 H 227 ASP THR THR GLY SER SER VAL THR SER GLY CYS LEU VAL SEQRES 13 H 227 LYS GLY TYR PHE PRO GLU SER VAL THR VAL THR TRP ASN SEQRES 14 H 227 SER GLY SER LEU SER SER SER VAL HIS THR PHE PRO ALA SEQRES 15 H 227 LEU LEU GLN SER GLY LEU TYR THR MET SER SER SER VAL SEQRES 16 H 227 THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR SEQRES 17 H 227 CYS SER VAL ALA HIS PRO ALA SER SER THR THR VAL ASP SEQRES 18 H 227 LYS LYS LEU GLU PRO SER SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER THR SER SER LEU SER ALA SEQRES 2 L 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO ASP GLY THR VAL LYS VAL LEU ILE TYR TYR THR SER SEQRES 5 L 214 ARG LEU ARG SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 214 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 L 214 ASN THR LEU PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 E 5 DT DT DT DT THP SEQRES 1 A 5 DT DT DT DT THP HET THP A 8 24 HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE FORMUL 4 THP C10 H16 N2 O11 P2 FORMUL 5 HOH *196(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 SER H 52A ASN H 54 5 5 HELIX 3 AA3 ASP H 73 GLN H 75 5 3 HELIX 4 AA4 LYS H 83 THR H 87 5 5 HELIX 5 AA5 ALA H 98 GLY H 100C 1 6 HELIX 6 AA6 PRO H 200 SER H 203 5 4 HELIX 7 AA7 GLU L 79 ILE L 83 5 5 HELIX 8 AA8 SER L 121 SER L 127 1 7 HELIX 9 AA9 LYS L 183 ARG L 188 1 6 HELIX 10 AB1 ASN L 212 CYS L 214 5 3 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 MET H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 HIS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TYR H 58 N ARG H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 HIS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 PHE H 100H TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 SER H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 LEU H 174 PRO H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 AA4 4 HIS H 164 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 THR H 194 HIS H 199 -1 O SER H 196 N THR H 153 SHEET 3 AA5 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 AA6 4 MET L 4 THR L 5 0 SHEET 2 AA6 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA6 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA6 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA7 6 SER L 10 ALA L 13 0 SHEET 2 AA7 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA7 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 AA7 6 VAL L 44 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA7 6 ARG L 53 LEU L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 AA8 4 SER L 10 ALA L 13 0 SHEET 2 AA8 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA9 4 THR L 114 PHE L 118 0 SHEET 2 AA9 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 AA9 4 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AA9 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB1 4 SER L 153 ARG L 155 0 SHEET 2 AB1 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AB1 4 SER L 191 THR L 197 -1 O THR L 193 N LYS L 149 SHEET 4 AB1 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.15 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.12 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.07 LINK O3' DT A 7 P2 THP A 8 1555 1555 1.60 CISPEP 1 PHE H 146 PRO H 147 0 -8.04 CISPEP 2 GLU H 148 SER H 149 0 -1.34 CISPEP 3 TRP H 188 PRO H 189 0 9.25 CISPEP 4 LEU L 94 PRO L 95 0 -3.90 CISPEP 5 TYR L 140 PRO L 141 0 6.39 CRYST1 77.585 77.585 156.267 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006399 0.00000 MASTER 324 0 1 10 43 0 0 6 0 0 0 37 END