HEADER ISOMERASE 17-MAR-15 4YSV TITLE STRUCTURE OF AMINOACID RACEMASE IN APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 4-AMINOBUTYRATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS BUCHNERI; SOURCE 3 ORGANISM_TAXID: 1581; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLD PROS2 KEYWDS FOLD TYPE I OF PLP-DEPENDENT ENZYME, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SAKURABA,Y.MUTAGUCHI,J.HAYASHI,T.OHSHIMA REVDAT 3 17-MAY-17 4YSV 1 JRNL REVDAT 2 19-APR-17 4YSV 1 JRNL REVDAT 1 20-APR-16 4YSV 0 JRNL AUTH J.HAYASHI,Y.MUTAGUCHI,Y.MINEMURA,N.NAKAGAWA,K.YONEDA, JRNL AUTH 2 T.OHMORI,T.OHSHIMA,H.SAKURABA JRNL TITL CRYSTAL STRUCTURE OF THE NOVEL AMINO-ACID RACEMASE JRNL TITL 2 ISOLEUCINE 2-EPIMERASE FROM LACTOBACILLUS BUCHNERI. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 428 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28471367 JRNL DOI 10.1107/S2059798317005332 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 2.59000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.360 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.672 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3174 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3028 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4302 ; 1.827 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6995 ; 0.920 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 5.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.735 ;24.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;16.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.541 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3585 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 686 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1613 ; 3.518 ; 4.098 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1612 ; 3.469 ; 4.095 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2011 ; 5.292 ; 6.127 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4YSN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, MGCL2, REMARK 280 HEXADECYLTRIMETHYLAMMONIUM BROMIDE, PH 5.8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.14200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.57100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.14200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.57100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.14200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 31.57100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.14200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 31.57100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 253.03350 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 146.08896 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 253.03350 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 146.08896 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 31.57100 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 31.57100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 GLY A -8 REMARK 465 ILE A -7 REMARK 465 GLU A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LEU A 10 REMARK 465 ILE A 11 REMARK 465 ASP A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 ASN A 15 REMARK 465 LYS A 16 REMARK 465 TYR A 17 REMARK 465 TYR A 18 REMARK 465 ALA A 19 REMARK 465 ARG A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 ARG A 23 REMARK 465 ILE A 24 REMARK 465 ASN A 25 REMARK 465 TYR A 26 REMARK 465 TYR A 27 REMARK 465 ASN A 28 REMARK 465 ALA A 52 REMARK 465 SER A 53 REMARK 465 ALA A 54 REMARK 465 ASP A 302 REMARK 465 ALA A 303 REMARK 465 PRO A 304 REMARK 465 ALA A 305 REMARK 465 HIS A 306 REMARK 465 LEU A 307 REMARK 465 PHE A 308 REMARK 465 THR A 309 REMARK 465 LYS A 443 REMARK 465 ASP A 444 REMARK 465 THR A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 ILE A 448 REMARK 465 GLY A 449 REMARK 465 TRP A 450 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 57 45.54 -107.13 REMARK 500 LEU A 77 101.96 -160.82 REMARK 500 ALA A 83 -66.29 -136.79 REMARK 500 SER A 204 -76.13 -126.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YSN RELATED DB: PDB DBREF 4YSV A 1 450 UNP M1GRN3 M1GRN3_LACBU 1 450 SEQADV 4YSV GLY A -11 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV SER A -10 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV GLY A -9 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV GLY A -8 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV ILE A -7 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV GLU A -6 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV GLY A -5 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV ARG A -4 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV HIS A -3 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV MET A -2 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV GLU A -1 UNP M1GRN3 EXPRESSION TAG SEQADV 4YSV LEU A 0 UNP M1GRN3 EXPRESSION TAG SEQRES 1 A 462 GLY SER GLY GLY ILE GLU GLY ARG HIS MET GLU LEU MET SEQRES 2 A 462 GLY LYS LEU ASP LYS ALA SER LYS LEU ILE ASP GLU GLU SEQRES 3 A 462 ASN LYS TYR TYR ALA ARG SER ALA ARG ILE ASN TYR TYR SEQRES 4 A 462 ASN LEU VAL ILE ASP HIS ALA HIS GLY ALA THR LEU VAL SEQRES 5 A 462 ASP VAL ASP GLY ASN LYS TYR ILE ASP LEU LEU ALA SER SEQRES 6 A 462 ALA SER ALA ILE ASN VAL GLY HIS THR HIS GLU LYS VAL SEQRES 7 A 462 VAL LYS ALA ILE ALA ASP GLN ALA GLN LYS LEU ILE HIS SEQRES 8 A 462 TYR THR PRO ALA TYR PHE HIS HIS VAL PRO GLY MET GLU SEQRES 9 A 462 LEU SER GLU LYS LEU ALA LYS ILE ALA PRO GLY ASN SER SEQRES 10 A 462 PRO LYS MET VAL SER PHE GLY ASN SER GLY SER ASP ALA SEQRES 11 A 462 ASN ASP ALA ILE ILE LYS PHE ALA ARG ALA TYR THR GLY SEQRES 12 A 462 ARG GLN TYR ILE VAL SER TYR MET GLY SER TYR HIS GLY SEQRES 13 A 462 SER THR TYR GLY SER GLN THR LEU SER GLY SER SER LEU SEQRES 14 A 462 ASN MET THR ARG LYS ILE GLY PRO MET LEU PRO SER VAL SEQRES 15 A 462 VAL HIS VAL PRO TYR PRO ASP SER TYR ARG THR TYR PRO SEQRES 16 A 462 GLY GLU THR GLU HIS ASP VAL SER LEU ARG TYR PHE ASN SEQRES 17 A 462 GLU PHE LYS LYS PRO PHE GLU SER PHE LEU PRO ALA ASP SEQRES 18 A 462 GLU THR ALA CYS VAL LEU ILE GLU PRO ILE GLN GLY ASP SEQRES 19 A 462 GLY GLY ILE ILE LYS ALA PRO GLU GLU TYR MET GLN LEU SEQRES 20 A 462 VAL TYR LYS PHE CYS HIS GLU HIS GLY ILE LEU PHE ALA SEQRES 21 A 462 ILE ASP GLU VAL ASN GLN GLY LEU GLY ARG THR GLY LYS SEQRES 22 A 462 MET TRP ALA ILE GLN GLN PHE LYS ASP ILE GLU PRO ASP SEQRES 23 A 462 LEU MET SER VAL GLY LYS SER LEU ALA SER GLY MET PRO SEQRES 24 A 462 LEU SER ALA VAL ILE GLY LYS LYS GLU VAL MET GLN SER SEQRES 25 A 462 LEU ASP ALA PRO ALA HIS LEU PHE THR THR ALA GLY ASN SEQRES 26 A 462 PRO VAL CYS SER ALA ALA SER LEU ALA THR LEU ASP VAL SEQRES 27 A 462 ILE GLU TYR GLU GLY LEU VAL GLU LYS SER ALA THR ASP SEQRES 28 A 462 GLY ALA TYR ALA LYS GLN ARG PHE LEU GLU MET GLN GLN SEQRES 29 A 462 ARG HIS PRO MET ILE GLY ASP VAL ARG MET TRP GLY LEU SEQRES 30 A 462 ASN GLY GLY ILE GLU LEU VAL LYS ASP PRO LYS THR LYS SEQRES 31 A 462 GLU PRO ASP SER ASP ALA ALA THR LYS VAL ILE TYR TYR SEQRES 32 A 462 ALA PHE ALA HIS GLY VAL VAL ILE ILE THR LEU ALA GLY SEQRES 33 A 462 ASN ILE LEU ARG PHE GLN PRO PRO LEU VAL ILE PRO ARG SEQRES 34 A 462 GLU GLN LEU ASP GLN ALA LEU GLN VAL LEU ASP ASP ALA SEQRES 35 A 462 PHE THR ALA VAL GLU ASN GLY GLU VAL THR ILE PRO LYS SEQRES 36 A 462 ASP THR GLY LYS ILE GLY TRP FORMUL 2 HOH *75(H2 O) HELIX 1 AA1 HIS A 63 LEU A 77 1 15 HELIX 2 AA2 HIS A 87 ALA A 101 1 15 HELIX 3 AA3 SER A 114 GLY A 131 1 18 HELIX 4 AA4 THR A 146 SER A 153 1 8 HELIX 5 AA5 SER A 156 ARG A 161 1 6 HELIX 6 AA6 THR A 186 GLU A 203 1 18 HELIX 7 AA7 PRO A 207 ASP A 209 5 3 HELIX 8 AA8 PRO A 229 HIS A 243 1 15 HELIX 9 AA9 TRP A 263 PHE A 268 5 6 HELIX 10 AB1 GLY A 279 SER A 284 5 6 HELIX 11 AB2 LYS A 295 SER A 300 1 6 HELIX 12 AB3 ASN A 313 GLU A 330 1 18 HELIX 13 AB4 GLY A 331 HIS A 354 1 24 HELIX 14 AB5 ASP A 381 HIS A 395 1 15 HELIX 15 AB6 PRO A 416 ASN A 436 1 21 SHEET 1 AA1 4 ILE A 31 HIS A 35 0 SHEET 2 AA1 4 THR A 38 ASP A 41 -1 O THR A 38 N HIS A 35 SHEET 3 AA1 4 LYS A 46 ASP A 49 -1 O TYR A 47 N LEU A 39 SHEET 4 AA1 4 VAL A 397 VAL A 398 1 O VAL A 398 N ILE A 48 SHEET 1 AA2 7 LYS A 107 GLY A 112 0 SHEET 2 AA2 7 SER A 289 LYS A 294 -1 O GLY A 293 N MET A 108 SHEET 3 AA2 7 LEU A 275 VAL A 278 -1 N VAL A 278 O ALA A 290 SHEET 4 AA2 7 LEU A 246 ASP A 250 1 N ILE A 249 O LEU A 275 SHEET 5 AA2 7 THR A 211 ILE A 216 1 N VAL A 214 O ALA A 248 SHEET 6 AA2 7 TYR A 134 TYR A 138 1 N TYR A 134 O ALA A 212 SHEET 7 AA2 7 VAL A 170 VAL A 173 1 O VAL A 171 N SER A 137 SHEET 1 AA3 2 ILE A 219 GLN A 220 0 SHEET 2 AA3 2 ILE A 226 LYS A 227 -1 O ILE A 226 N GLN A 220 SHEET 1 AA4 4 ILE A 357 MET A 362 0 SHEET 2 AA4 4 GLY A 367 LEU A 371 -1 O GLU A 370 N ASP A 359 SHEET 3 AA4 4 ILE A 406 PHE A 409 -1 O LEU A 407 N ILE A 369 SHEET 4 AA4 4 ILE A 400 LEU A 402 -1 N ILE A 400 O ARG A 408 CISPEP 1 GLY A 164 PRO A 165 0 -0.15 CRYST1 168.689 168.689 94.713 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005928 0.003423 0.000000 0.00000 SCALE2 0.000000 0.006845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010558 0.00000 MASTER 370 0 0 15 17 0 0 6 0 0 0 36 END