HEADER HYDROLASE/DNA 12-MAR-15 4YOW TITLE CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PYROCOCCUS TITLE 2 HORIKOSHII OT3 IN COMPLEX WITH POLY-DC COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-5 EXONUCLEASE PHOEXO I; COMPND 3 CHAIN: A, C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*CP*CP*CP*CP*CP*C)-3'; COMPND 8 CHAIN: B, D, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS EXONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.MIYAZONO,T.ITO,M.TANOKURA REVDAT 3 05-FEB-20 4YOW 1 SOURCE JRNL REMARK REVDAT 2 16-SEP-15 4YOW 1 JRNL REVDAT 1 15-JUL-15 4YOW 0 JRNL AUTH K.MIYAZONO,S.ISHINO,K.TSUTSUMI,T.ITO,Y.ISHINO,M.TANOKURA JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION AND PROCESSIVE JRNL TITL 2 CLEAVAGE MECHANISMS OF THE TRIMERIC EXONUCLEASE PHOEXO I JRNL REF NUCLEIC ACIDS RES. V. 43 7122 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26138487 JRNL DOI 10.1093/NAR/GKV654 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9838 - 5.6833 1.00 2761 136 0.1546 0.1816 REMARK 3 2 5.6833 - 4.5283 1.00 2630 132 0.1559 0.2101 REMARK 3 3 4.5283 - 3.9609 1.00 2608 148 0.1746 0.2141 REMARK 3 4 3.9609 - 3.6011 1.00 2561 143 0.1834 0.2406 REMARK 3 5 3.6011 - 3.3442 1.00 2588 138 0.2281 0.2537 REMARK 3 6 3.3442 - 3.1479 1.00 2579 127 0.2382 0.2468 REMARK 3 7 3.1479 - 2.9908 1.00 2565 141 0.2509 0.2754 REMARK 3 8 2.9908 - 2.8610 1.00 2564 121 0.2656 0.2748 REMARK 3 9 2.8610 - 2.7511 1.00 2539 145 0.2745 0.3211 REMARK 3 10 2.7511 - 2.6564 0.99 2527 144 0.2904 0.2837 REMARK 3 11 2.6564 - 2.5735 0.98 2487 126 0.3159 0.3796 REMARK 3 12 2.5735 - 2.5001 0.96 2424 152 0.3459 0.3980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5727 REMARK 3 ANGLE : 0.718 7776 REMARK 3 CHIRALITY : 0.028 891 REMARK 3 PLANARITY : 0.004 948 REMARK 3 DIHEDRAL : 11.744 2205 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7936 40.2648 -4.7467 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.6633 REMARK 3 T33: 0.4167 T12: -0.2400 REMARK 3 T13: -0.0332 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.1145 L22: 1.7520 REMARK 3 L33: 1.5083 L12: 0.5839 REMARK 3 L13: -0.2890 L23: 0.3229 REMARK 3 S TENSOR REMARK 3 S11: -0.2933 S12: 0.2031 S13: -0.1260 REMARK 3 S21: -0.1879 S22: 0.1351 S23: 0.5734 REMARK 3 S31: 0.5643 S32: -0.7330 S33: 0.1249 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0023 33.2847 -5.6856 REMARK 3 T TENSOR REMARK 3 T11: 0.5807 T22: 0.5299 REMARK 3 T33: 0.4834 T12: -0.2637 REMARK 3 T13: 0.0451 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 2.4971 L22: 2.5385 REMARK 3 L33: 3.9927 L12: 0.1083 REMARK 3 L13: -1.0513 L23: 0.6663 REMARK 3 S TENSOR REMARK 3 S11: -0.3557 S12: 0.3259 S13: -0.6278 REMARK 3 S21: -0.2759 S22: 0.1381 S23: 0.3120 REMARK 3 S31: 0.8429 S32: -0.4965 S33: 0.1681 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0270 51.7843 1.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.3873 T22: 0.7154 REMARK 3 T33: 0.6124 T12: -0.0155 REMARK 3 T13: -0.0916 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.3318 L22: 2.2450 REMARK 3 L33: 2.9723 L12: 0.0912 REMARK 3 L13: -1.2123 L23: 0.1704 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: 0.5213 S13: 0.2010 REMARK 3 S21: -0.3260 S22: 0.1646 S23: 0.8161 REMARK 3 S31: -0.1054 S32: -1.1749 S33: -0.0922 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5030 32.7923 4.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.6928 T22: 0.6356 REMARK 3 T33: 0.7995 T12: -0.1647 REMARK 3 T13: 0.1698 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 8.6455 L22: 6.2907 REMARK 3 L33: 6.9354 L12: -0.3639 REMARK 3 L13: 3.3230 L23: 2.2271 REMARK 3 S TENSOR REMARK 3 S11: -0.7484 S12: 0.8416 S13: -0.0937 REMARK 3 S21: 0.5930 S22: -1.0173 S23: -0.3180 REMARK 3 S31: 0.6274 S32: -0.3986 S33: 1.3517 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3648 45.4988 32.7615 REMARK 3 T TENSOR REMARK 3 T11: 0.4452 T22: 0.4046 REMARK 3 T33: 0.4869 T12: -0.0317 REMARK 3 T13: 0.1249 T23: -0.0510 REMARK 3 L TENSOR REMARK 3 L11: 5.8544 L22: 1.1197 REMARK 3 L33: 5.8934 L12: 0.3791 REMARK 3 L13: 2.4304 L23: 0.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.5648 S13: -0.0795 REMARK 3 S21: 0.3306 S22: -0.0142 S23: 0.3276 REMARK 3 S31: -0.1128 S32: -0.6767 S33: -0.0840 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 56 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8764 30.6590 28.3349 REMARK 3 T TENSOR REMARK 3 T11: 0.5051 T22: 0.5957 REMARK 3 T33: 0.6933 T12: -0.1875 REMARK 3 T13: 0.0424 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 4.7369 L22: 5.1497 REMARK 3 L33: 3.6215 L12: -0.3267 REMARK 3 L13: -0.2649 L23: 0.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.0963 S12: -0.2659 S13: -0.8321 REMARK 3 S21: 0.4880 S22: -0.1068 S23: 0.5864 REMARK 3 S31: 0.6089 S32: -0.6031 S33: -0.0099 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 139 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4981 55.0102 31.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.3916 REMARK 3 T33: 0.5635 T12: 0.0094 REMARK 3 T13: 0.0804 T23: -0.0993 REMARK 3 L TENSOR REMARK 3 L11: 3.8149 L22: 2.3743 REMARK 3 L33: 2.0901 L12: 0.5536 REMARK 3 L13: 0.8231 L23: 0.5703 REMARK 3 S TENSOR REMARK 3 S11: -0.1227 S12: -0.3454 S13: 0.7004 REMARK 3 S21: 0.4003 S22: -0.1000 S23: 0.4004 REMARK 3 S31: -0.3137 S32: -0.5000 S33: 0.1731 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 8 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7833 37.0305 29.9572 REMARK 3 T TENSOR REMARK 3 T11: 0.9678 T22: 0.7087 REMARK 3 T33: 1.0537 T12: -0.0804 REMARK 3 T13: 0.1251 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 1.3128 L22: 4.0857 REMARK 3 L33: 6.5087 L12: -1.8991 REMARK 3 L13: -2.3804 L23: 5.1790 REMARK 3 S TENSOR REMARK 3 S11: 0.5225 S12: -0.2555 S13: -1.1028 REMARK 3 S21: 0.1490 S22: -1.5719 S23: 1.6240 REMARK 3 S31: 0.6810 S32: -0.5622 S33: 1.1910 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0026 47.7775 16.5848 REMARK 3 T TENSOR REMARK 3 T11: 0.3579 T22: 0.5078 REMARK 3 T33: 0.4363 T12: 0.0128 REMARK 3 T13: 0.0104 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 1.7624 L22: 1.8966 REMARK 3 L33: 8.3842 L12: 0.9145 REMARK 3 L13: -0.0168 L23: 1.4986 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.2530 S13: -0.1285 REMARK 3 S21: -0.1381 S22: 0.2443 S23: -0.4085 REMARK 3 S31: 0.2843 S32: 1.5356 S33: -0.2274 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 56 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5699 36.7023 29.3421 REMARK 3 T TENSOR REMARK 3 T11: 0.8058 T22: 0.5447 REMARK 3 T33: 0.6822 T12: 0.1583 REMARK 3 T13: -0.1375 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 4.0948 L22: 2.3877 REMARK 3 L33: 5.0008 L12: -1.8095 REMARK 3 L13: -0.7505 L23: -0.9521 REMARK 3 S TENSOR REMARK 3 S11: 0.2734 S12: 0.2284 S13: -1.0592 REMARK 3 S21: 0.0498 S22: 0.0334 S23: -0.2566 REMARK 3 S31: 1.5166 S32: 0.9044 S33: -0.1794 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 139 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1294 54.9010 9.2483 REMARK 3 T TENSOR REMARK 3 T11: 0.4138 T22: 0.4746 REMARK 3 T33: 0.4025 T12: -0.1144 REMARK 3 T13: 0.0142 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.8221 L22: 1.6127 REMARK 3 L33: 5.3257 L12: 0.8568 REMARK 3 L13: 0.1087 L23: -0.4120 REMARK 3 S TENSOR REMARK 3 S11: -0.1886 S12: 0.5065 S13: 0.3598 REMARK 3 S21: -0.2328 S22: 0.1952 S23: -0.1755 REMARK 3 S31: -0.6645 S32: 0.7269 S33: -0.0355 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 8 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4154 37.4843 14.1990 REMARK 3 T TENSOR REMARK 3 T11: 1.0127 T22: 1.1257 REMARK 3 T33: 1.2077 T12: 0.2089 REMARK 3 T13: 0.0558 T23: 0.1487 REMARK 3 L TENSOR REMARK 3 L11: 4.1805 L22: 0.8411 REMARK 3 L33: 2.9361 L12: -0.2874 REMARK 3 L13: 0.2942 L23: 1.4722 REMARK 3 S TENSOR REMARK 3 S11: -0.2420 S12: -0.5247 S13: -1.4953 REMARK 3 S21: 0.1568 S22: 0.1428 S23: 1.0681 REMARK 3 S31: 1.5960 S32: 1.7609 S33: 0.0238 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 75.051 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.95800 REMARK 200 R SYM FOR SHELL (I) : 0.95800 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG6000, LICL, PH 5.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.78450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.59050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.13250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.59050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.78450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.13250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 228 REMARK 465 SER A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 DC B 8 REMARK 465 DC B 9 REMARK 465 DC B 10 REMARK 465 LYS C 228 REMARK 465 SER C 229 REMARK 465 HIS C 230 REMARK 465 HIS C 231 REMARK 465 HIS C 232 REMARK 465 HIS C 233 REMARK 465 DC D 8 REMARK 465 DC D 9 REMARK 465 DC D 10 REMARK 465 LYS E 228 REMARK 465 SER E 229 REMARK 465 HIS E 230 REMARK 465 HIS E 231 REMARK 465 HIS E 232 REMARK 465 HIS E 233 REMARK 465 DC F 8 REMARK 465 DC F 9 REMARK 465 DC F 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 73 70.06 48.56 REMARK 500 TYR A 173 57.48 37.98 REMARK 500 SER C 73 70.21 48.64 REMARK 500 TYR C 173 57.02 37.85 REMARK 500 SER E 73 70.01 47.31 REMARK 500 TYR E 173 57.38 37.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YOR RELATED DB: PDB REMARK 900 RELATED ID: 4YOT RELATED DB: PDB REMARK 900 RELATED ID: 4YOU RELATED DB: PDB REMARK 900 RELATED ID: 4YOV RELATED DB: PDB REMARK 900 RELATED ID: 4YOX RELATED DB: PDB REMARK 900 RELATED ID: 4YOY RELATED DB: PDB DBREF1 4YOW A 1 229 UNP A0A060P168_PYRHR DBREF2 4YOW A A0A060P168 1 229 DBREF 4YOW B 4 10 PDB 4YOW 4YOW 4 10 DBREF1 4YOW C 1 229 UNP A0A060P168_PYRHR DBREF2 4YOW C A0A060P168 1 229 DBREF 4YOW D 4 10 PDB 4YOW 4YOW 4 10 DBREF1 4YOW E 1 229 UNP A0A060P168_PYRHR DBREF2 4YOW E A0A060P168 1 229 DBREF 4YOW F 4 10 PDB 4YOW 4YOW 4 10 SEQADV 4YOW ASN A 80 UNP A0A060P16 ASP 80 ENGINEERED MUTATION SEQADV 4YOW HIS A 230 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS A 231 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS A 232 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS A 233 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW ASN C 80 UNP A0A060P16 ASP 80 ENGINEERED MUTATION SEQADV 4YOW HIS C 230 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS C 231 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS C 232 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS C 233 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW ASN E 80 UNP A0A060P16 ASP 80 ENGINEERED MUTATION SEQADV 4YOW HIS E 230 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS E 231 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS E 232 UNP A0A060P16 EXPRESSION TAG SEQADV 4YOW HIS E 233 UNP A0A060P16 EXPRESSION TAG SEQRES 1 A 233 MET ARG ILE VAL ALA ALA ASP THR GLY GLY ALA VAL LEU SEQRES 2 A 233 ASP GLU SER PHE GLN PRO VAL GLY LEU ILE ALA THR VAL SEQRES 3 A 233 ALA VAL LEU VAL GLU LYS PRO TYR LYS THR SER LYS ARG SEQRES 4 A 233 PHE LEU VAL LYS TYR ALA ASP PRO TYR ASN TYR ASP LEU SEQRES 5 A 233 SER GLY ARG GLN ALA ILE ARG ASP GLU ILE GLU LEU ALA SEQRES 6 A 233 ILE GLU LEU ALA ARG GLU VAL SER PRO ASP VAL ILE HIS SEQRES 7 A 233 LEU ASN SER THR LEU GLY GLY ILE GLU VAL ARG LYS LEU SEQRES 8 A 233 ASP GLU SER THR ILE ASP ALA LEU GLN ILE SER ASP ARG SEQRES 9 A 233 GLY LYS GLU ILE TRP LYS GLU LEU SER LYS ASP LEU GLN SEQRES 10 A 233 PRO LEU ALA LYS LYS PHE TRP GLU GLU THR GLY ILE GLU SEQRES 11 A 233 ILE ILE ALA ILE GLY LYS SER SER VAL PRO VAL ARG ILE SEQRES 12 A 233 ALA GLU ILE TYR ALA GLY ILE PHE SER VAL LYS TRP ALA SEQRES 13 A 233 LEU ASP ASN VAL LYS GLU LYS GLY GLY LEU LEU VAL GLY SEQRES 14 A 233 LEU PRO ARG TYR MET GLU VAL GLU ILE LYS LYS ASP LYS SEQRES 15 A 233 ILE ILE GLY LYS SER LEU ASP PRO ARG GLU GLY GLY LEU SEQRES 16 A 233 TYR GLY GLU VAL LYS THR GLU VAL PRO GLN GLY ILE LYS SEQRES 17 A 233 TRP GLU LEU TYR PRO ASN PRO LEU VAL ARG ARG PHE MET SEQRES 18 A 233 VAL PHE GLU ILE THR SER LYS SER HIS HIS HIS HIS SEQRES 1 B 7 DC DC DC DC DC DC DC SEQRES 1 C 233 MET ARG ILE VAL ALA ALA ASP THR GLY GLY ALA VAL LEU SEQRES 2 C 233 ASP GLU SER PHE GLN PRO VAL GLY LEU ILE ALA THR VAL SEQRES 3 C 233 ALA VAL LEU VAL GLU LYS PRO TYR LYS THR SER LYS ARG SEQRES 4 C 233 PHE LEU VAL LYS TYR ALA ASP PRO TYR ASN TYR ASP LEU SEQRES 5 C 233 SER GLY ARG GLN ALA ILE ARG ASP GLU ILE GLU LEU ALA SEQRES 6 C 233 ILE GLU LEU ALA ARG GLU VAL SER PRO ASP VAL ILE HIS SEQRES 7 C 233 LEU ASN SER THR LEU GLY GLY ILE GLU VAL ARG LYS LEU SEQRES 8 C 233 ASP GLU SER THR ILE ASP ALA LEU GLN ILE SER ASP ARG SEQRES 9 C 233 GLY LYS GLU ILE TRP LYS GLU LEU SER LYS ASP LEU GLN SEQRES 10 C 233 PRO LEU ALA LYS LYS PHE TRP GLU GLU THR GLY ILE GLU SEQRES 11 C 233 ILE ILE ALA ILE GLY LYS SER SER VAL PRO VAL ARG ILE SEQRES 12 C 233 ALA GLU ILE TYR ALA GLY ILE PHE SER VAL LYS TRP ALA SEQRES 13 C 233 LEU ASP ASN VAL LYS GLU LYS GLY GLY LEU LEU VAL GLY SEQRES 14 C 233 LEU PRO ARG TYR MET GLU VAL GLU ILE LYS LYS ASP LYS SEQRES 15 C 233 ILE ILE GLY LYS SER LEU ASP PRO ARG GLU GLY GLY LEU SEQRES 16 C 233 TYR GLY GLU VAL LYS THR GLU VAL PRO GLN GLY ILE LYS SEQRES 17 C 233 TRP GLU LEU TYR PRO ASN PRO LEU VAL ARG ARG PHE MET SEQRES 18 C 233 VAL PHE GLU ILE THR SER LYS SER HIS HIS HIS HIS SEQRES 1 D 7 DC DC DC DC DC DC DC SEQRES 1 E 233 MET ARG ILE VAL ALA ALA ASP THR GLY GLY ALA VAL LEU SEQRES 2 E 233 ASP GLU SER PHE GLN PRO VAL GLY LEU ILE ALA THR VAL SEQRES 3 E 233 ALA VAL LEU VAL GLU LYS PRO TYR LYS THR SER LYS ARG SEQRES 4 E 233 PHE LEU VAL LYS TYR ALA ASP PRO TYR ASN TYR ASP LEU SEQRES 5 E 233 SER GLY ARG GLN ALA ILE ARG ASP GLU ILE GLU LEU ALA SEQRES 6 E 233 ILE GLU LEU ALA ARG GLU VAL SER PRO ASP VAL ILE HIS SEQRES 7 E 233 LEU ASN SER THR LEU GLY GLY ILE GLU VAL ARG LYS LEU SEQRES 8 E 233 ASP GLU SER THR ILE ASP ALA LEU GLN ILE SER ASP ARG SEQRES 9 E 233 GLY LYS GLU ILE TRP LYS GLU LEU SER LYS ASP LEU GLN SEQRES 10 E 233 PRO LEU ALA LYS LYS PHE TRP GLU GLU THR GLY ILE GLU SEQRES 11 E 233 ILE ILE ALA ILE GLY LYS SER SER VAL PRO VAL ARG ILE SEQRES 12 E 233 ALA GLU ILE TYR ALA GLY ILE PHE SER VAL LYS TRP ALA SEQRES 13 E 233 LEU ASP ASN VAL LYS GLU LYS GLY GLY LEU LEU VAL GLY SEQRES 14 E 233 LEU PRO ARG TYR MET GLU VAL GLU ILE LYS LYS ASP LYS SEQRES 15 E 233 ILE ILE GLY LYS SER LEU ASP PRO ARG GLU GLY GLY LEU SEQRES 16 E 233 TYR GLY GLU VAL LYS THR GLU VAL PRO GLN GLY ILE LYS SEQRES 17 E 233 TRP GLU LEU TYR PRO ASN PRO LEU VAL ARG ARG PHE MET SEQRES 18 E 233 VAL PHE GLU ILE THR SER LYS SER HIS HIS HIS HIS SEQRES 1 F 7 DC DC DC DC DC DC DC FORMUL 7 HOH *59(H2 O) HELIX 1 AA1 ASP A 46 TYR A 50 5 5 HELIX 2 AA2 ARG A 55 SER A 73 1 19 HELIX 3 AA3 GLU A 87 LEU A 91 5 5 HELIX 4 AA4 ASP A 92 ASP A 97 1 6 HELIX 5 AA5 SER A 102 GLY A 128 1 27 HELIX 6 AA6 ILE A 134 SER A 137 5 4 HELIX 7 AA7 SER A 138 GLY A 164 1 27 HELIX 8 AA8 ASP A 189 GLY A 193 5 5 HELIX 9 AA9 ASP C 46 TYR C 50 5 5 HELIX 10 AB1 ARG C 55 SER C 73 1 19 HELIX 11 AB2 GLU C 87 LEU C 91 5 5 HELIX 12 AB3 ASP C 92 ALA C 98 1 7 HELIX 13 AB4 SER C 102 GLY C 128 1 27 HELIX 14 AB5 ILE C 134 SER C 137 5 4 HELIX 15 AB6 SER C 138 GLY C 164 1 27 HELIX 16 AB7 ASP C 189 GLY C 193 5 5 HELIX 17 AB8 ASP E 46 TYR E 50 5 5 HELIX 18 AB9 ARG E 55 SER E 73 1 19 HELIX 19 AC1 GLU E 87 LEU E 91 5 5 HELIX 20 AC2 ASP E 92 ASP E 97 1 6 HELIX 21 AC3 SER E 102 GLY E 128 1 27 HELIX 22 AC4 ILE E 134 SER E 137 5 4 HELIX 23 AC5 SER E 138 GLY E 164 1 27 HELIX 24 AC6 ASP E 189 GLY E 193 5 5 SHEET 1 AA1 5 ARG A 39 TYR A 44 0 SHEET 2 AA1 5 PRO A 19 GLU A 31 -1 N THR A 25 O LYS A 43 SHEET 3 AA1 5 ARG A 2 LEU A 13 -1 N ILE A 3 O VAL A 30 SHEET 4 AA1 5 VAL A 76 LEU A 79 1 O HIS A 78 N VAL A 4 SHEET 5 AA1 5 ILE A 131 ILE A 132 1 O ILE A 132 N LEU A 79 SHEET 1 AA2 6 ARG A 39 TYR A 44 0 SHEET 2 AA2 6 PRO A 19 GLU A 31 -1 N THR A 25 O LYS A 43 SHEET 3 AA2 6 ARG A 2 LEU A 13 -1 N ILE A 3 O VAL A 30 SHEET 4 AA2 6 LEU A 166 ARG A 172 -1 O GLY A 169 N ALA A 11 SHEET 5 AA2 6 PHE A 220 THR A 226 -1 O PHE A 223 N VAL A 168 SHEET 6 AA2 6 LYS A 208 PRO A 213 -1 N TYR A 212 O VAL A 222 SHEET 1 AA3 3 MET A 174 ILE A 178 0 SHEET 2 AA3 3 LYS A 182 SER A 187 -1 O ILE A 184 N GLU A 177 SHEET 3 AA3 3 TYR A 196 LYS A 200 -1 O GLY A 197 N GLY A 185 SHEET 1 AA4 5 ARG C 39 TYR C 44 0 SHEET 2 AA4 5 PRO C 19 GLU C 31 -1 N THR C 25 O LYS C 43 SHEET 3 AA4 5 ARG C 2 LEU C 13 -1 N VAL C 12 O VAL C 20 SHEET 4 AA4 5 VAL C 76 LEU C 79 1 O HIS C 78 N VAL C 4 SHEET 5 AA4 5 ILE C 131 ILE C 132 1 O ILE C 132 N LEU C 79 SHEET 1 AA5 6 ARG C 39 TYR C 44 0 SHEET 2 AA5 6 PRO C 19 GLU C 31 -1 N THR C 25 O LYS C 43 SHEET 3 AA5 6 ARG C 2 LEU C 13 -1 N VAL C 12 O VAL C 20 SHEET 4 AA5 6 LEU C 166 ARG C 172 -1 O GLY C 169 N ALA C 11 SHEET 5 AA5 6 PHE C 220 THR C 226 -1 O PHE C 223 N VAL C 168 SHEET 6 AA5 6 LYS C 208 PRO C 213 -1 N TYR C 212 O VAL C 222 SHEET 1 AA6 3 MET C 174 ILE C 178 0 SHEET 2 AA6 3 LYS C 182 SER C 187 -1 O ILE C 184 N GLU C 177 SHEET 3 AA6 3 TYR C 196 LYS C 200 -1 O VAL C 199 N ILE C 183 SHEET 1 AA7 5 ARG E 39 TYR E 44 0 SHEET 2 AA7 5 PRO E 19 VAL E 30 -1 N LEU E 29 O ARG E 39 SHEET 3 AA7 5 ILE E 3 LEU E 13 -1 N VAL E 12 O VAL E 20 SHEET 4 AA7 5 VAL E 76 LEU E 79 1 O HIS E 78 N VAL E 4 SHEET 5 AA7 5 GLU E 130 ILE E 132 1 O ILE E 132 N LEU E 79 SHEET 1 AA8 6 ARG E 39 TYR E 44 0 SHEET 2 AA8 6 PRO E 19 VAL E 30 -1 N LEU E 29 O ARG E 39 SHEET 3 AA8 6 ILE E 3 LEU E 13 -1 N VAL E 12 O VAL E 20 SHEET 4 AA8 6 LEU E 166 ARG E 172 -1 O GLY E 169 N ALA E 11 SHEET 5 AA8 6 PHE E 220 THR E 226 -1 O PHE E 223 N VAL E 168 SHEET 6 AA8 6 LYS E 208 PRO E 213 -1 N TYR E 212 O VAL E 222 SHEET 1 AA9 3 MET E 174 ILE E 178 0 SHEET 2 AA9 3 LYS E 182 SER E 187 -1 O ILE E 184 N GLU E 177 SHEET 3 AA9 3 TYR E 196 LYS E 200 -1 O GLY E 197 N GLY E 185 CISPEP 1 LYS A 32 PRO A 33 0 5.66 CISPEP 2 LYS C 32 PRO C 33 0 5.65 CISPEP 3 LYS E 32 PRO E 33 0 5.16 CRYST1 81.569 100.265 113.181 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008835 0.00000 MASTER 448 0 0 24 42 0 0 6 0 0 0 57 END