HEADER SIGNALING PROTEIN 10-FEB-15 4Y32 TITLE CRYSTAL STRUCTURE OF C-TERMINAL MODIFIED TAU PEPTIDE-HYBRID 109B WITH TITLE 2 14-3-3SIGMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ARG-THR-PRO-SEP-LEU-PRO-CNC(C(C)O)C(=O)N1CCCC1CCOC; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: THE C-TERMINAL PROLINE CONTAINS CHEMICAL MODIFICATIONS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PEPTIDE-HYBRID, INHIBITOR, PROTEIN-PROTEIN INTERACTION, PEPTIDE KEYWDS 2 BINDING PROTEIN, ADAPTER PROTEIN, 14-3-3, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BARTEL,L.MILROY,D.BIER,L.BRUNSVELD,C.OTTMANN REVDAT 3 13-MAR-19 4Y32 1 REMARK HELIX ATOM REVDAT 2 27-JAN-16 4Y32 1 JRNL REVDAT 1 23-DEC-15 4Y32 0 JRNL AUTH L.G.MILROY,M.BARTEL,M.A.HENEN,S.LEYSEN,J.M.ADRIAANS, JRNL AUTH 2 L.BRUNSVELD,I.LANDRIEU,C.OTTMANN JRNL TITL STABILIZER-GUIDED INHIBITION OF PROTEIN-PROTEIN JRNL TITL 2 INTERACTIONS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 15720 2015 JRNL REFN ESSN 1521-3773 JRNL PMID 26537010 JRNL DOI 10.1002/ANIE.201507976 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0017 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4155 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 761 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.792 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4024 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5453 ; 1.993 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 530 ; 5.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;36.910 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 779 ;14.498 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2995 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Y32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000204304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99983 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.477 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.426 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES/NAOH PH 7.1, 0.19 M CACL2, REMARK 280 24% PEG 400, 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.53100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.38900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.38900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.53100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -31.53100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -35.14150 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 138 REMARK 465 ASP B 138 REMARK 465 ARG D 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 71 CD OE1 OE2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 SER A 149 N C O REMARK 470 GLU B 71 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 524 O HOH A 540 1.43 REMARK 500 CB SER A 192 O HOH A 314 1.48 REMARK 500 CB SER B 63 O HOH B 305 1.50 REMARK 500 O HOH B 303 O HOH B 400 1.52 REMARK 500 O HOH A 379 O HOH A 550 1.52 REMARK 500 CG1 ILE B 7 O HOH B 626 1.57 REMARK 500 O HOH A 426 O HOH A 565 1.62 REMARK 500 CB LYS B 109 O HOH B 543 1.71 REMARK 500 CB TRP B 230 O HOH B 539 1.73 REMARK 500 CB ALA A 13 O HOH A 429 1.74 REMARK 500 O HOH B 547 O HOH B 652 1.74 REMARK 500 SD MET B 162 O HOH B 645 1.74 REMARK 500 O HOH A 308 O HOH A 318 1.75 REMARK 500 O HOH A 483 O HOH A 514 1.76 REMARK 500 C THR C 217 NAA 49F C 301 1.77 REMARK 500 O HOH A 359 O HOH A 451 1.77 REMARK 500 C GLY B 137 O HOH B 303 1.79 REMARK 500 CE LYS A 214 O HOH A 326 1.81 REMARK 500 CB SER A 5 O HOH A 306 1.82 REMARK 500 O HOH B 354 O HOH B 373 1.82 REMARK 500 O HOH A 555 O HOH A 569 1.85 REMARK 500 CB MET B 123 O HOH B 519 1.85 REMARK 500 O HOH A 340 O HOH A 406 1.86 REMARK 500 CA LYS B 9 O HOH B 349 1.87 REMARK 500 O HOH B 434 O HOH B 513 1.90 REMARK 500 C THR A 231 O HOH A 309 1.90 REMARK 500 O HOH B 382 O HOH B 402 1.91 REMARK 500 CB GLU A 188 O HOH A 500 1.91 REMARK 500 CB SER A 212 O HOH A 380 1.93 REMARK 500 O HOH A 448 O HOH B 531 1.93 REMARK 500 CG2 VAL B 178 O HOH D 302 1.94 REMARK 500 CB LYS B 124 O HOH B 320 1.94 REMARK 500 O HOH A 387 O HOH A 600 1.94 REMARK 500 O HOH B 428 O HOH B 541 1.96 REMARK 500 CB SER A 64 O HOH A 364 1.98 REMARK 500 O HOH A 359 O HOH A 444 1.98 REMARK 500 CB GLU A 39 O HOH A 444 1.98 REMARK 500 CE LYS B 141 O HOH B 433 1.98 REMARK 500 OH TYR B 213 O HOH B 301 1.99 REMARK 500 CG1 VAL A 134 O HOH A 560 2.00 REMARK 500 O HOH B 312 O HOH B 387 2.00 REMARK 500 CB ALA A 132 O HOH A 437 2.02 REMARK 500 CG MET B 162 O HOH B 645 2.03 REMARK 500 O HOH B 567 O HOH B 622 2.04 REMARK 500 CB LEU B 131 O HOH B 337 2.05 REMARK 500 O HOH B 325 O HOH B 387 2.05 REMARK 500 O HOH B 439 O HOH B 579 2.06 REMARK 500 O HOH B 400 O HOH B 607 2.06 REMARK 500 O HOH A 350 O HOH A 600 2.07 REMARK 500 CB CYS A 38 O HOH A 529 2.07 REMARK 500 REMARK 500 THIS ENTRY HAS 72 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB SER A 37 O HOH A 316 4455 1.66 REMARK 500 CE MET A 202 O HOH B 624 4455 1.93 REMARK 500 CD1 ILE A 65 O HOH B 339 4445 2.07 REMARK 500 O HOH A 337 O HOH A 342 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 39 CG GLU A 39 CD 0.126 REMARK 500 GLU A 39 CD GLU A 39 OE1 0.101 REMARK 500 GLU A 39 CD GLU A 39 OE2 0.091 REMARK 500 ARG B 148 CZ ARG B 148 NH1 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PHE A 176 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 PHE A 176 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 LEU A 208 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG B 82 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 148 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 148 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP B 156 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 PHE B 176 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 76.30 -104.34 REMARK 500 ARG B 18 79.62 -104.36 REMARK 500 GLU B 71 -154.07 -118.95 REMARK 500 SER B 74 -72.88 -70.64 REMARK 500 HIS B 106 38.86 -144.86 REMARK 500 PRO D 216 -163.01 -79.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 109 GLU A 110 132.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 656 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH B 675 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 676 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 677 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 678 DISTANCE = 6.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 49F C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 213 and SEP C REMARK 800 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP C 214 and LEU C REMARK 800 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO D 213 and SEP D REMARK 800 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP D 214 and LEU D REMARK 800 215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FL5 RELATED DB: PDB REMARK 900 4FL5 CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT UNMODIFIED REMARK 900 PEPTIDE LIGAND. REMARK 900 RELATED ID: 4Y3B RELATED DB: PDB REMARK 900 4Y3B CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT MODIFIED REMARK 900 PEPTIDE LIGAND 201D. REMARK 900 RELATED ID: 4Y3V RELATED DB: PDB REMARK 900 4Y3V CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT MODIFIED REMARK 900 PEPTIDE LIGAND 126A. REMARK 900 RELATED ID: 4Y5I RELATED DB: PDB REMARK 900 4Y5I CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT MODIFIED REMARK 900 PEPTIDE LIGAND 126B. DBREF 4Y32 A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 4Y32 B 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 4Y32 C 211 217 PDB 4Y32 4Y32 211 217 DBREF 4Y32 D 211 217 PDB 4Y32 4Y32 211 217 SEQADV 4Y32 GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 4Y32 ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 4Y32 MET A -2 UNP P31947 EXPRESSION TAG SEQADV 4Y32 GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 4Y32 SER A 0 UNP P31947 EXPRESSION TAG SEQADV 4Y32 GLY B -4 UNP P31947 EXPRESSION TAG SEQADV 4Y32 ALA B -3 UNP P31947 EXPRESSION TAG SEQADV 4Y32 MET B -2 UNP P31947 EXPRESSION TAG SEQADV 4Y32 GLY B -1 UNP P31947 EXPRESSION TAG SEQADV 4Y32 SER B 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 B 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 B 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 B 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 B 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 B 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 B 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 B 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 B 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 B 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 B 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 B 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 B 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 B 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 B 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 B 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 B 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 B 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 B 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 B 236 TRP THR SEQRES 1 C 7 ARG THR PRO SEP LEU PRO THR SEQRES 1 D 7 ARG THR PRO SEP LEU PRO THR HET SEP C 214 10 HET SEP D 214 10 HET 49F C 301 9 HETNAM SEP PHOSPHOSERINE HETNAM 49F (2S)-2-(2-METHOXYETHYL)PYRROLIDINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 49F C7 H15 N O FORMUL 6 HOH *761(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 HIS A 106 1 28 HELIX 5 AA5 ASP A 113 ALA A 135 1 23 HELIX 6 AA6 LYS A 140 ARG A 148 1 9 HELIX 7 AA7 TYR A 151 MET A 162 1 12 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 LEU A 205 1 20 HELIX 10 AB1 HIS A 206 LEU A 208 5 3 HELIX 11 AB2 SER A 209 THR A 231 1 23 HELIX 12 AB3 GLU B 2 ALA B 16 1 15 HELIX 13 AB4 ARG B 18 LYS B 32 1 15 HELIX 14 AB5 SER B 37 SER B 69 1 33 HELIX 15 AB6 PRO B 79 SER B 105 1 27 HELIX 16 AB7 ASP B 113 ALA B 135 1 23 HELIX 17 AB8 LYS B 140 MET B 162 1 23 HELIX 18 AB9 ASN B 166 ILE B 183 1 18 HELIX 19 AC1 SER B 186 LEU B 205 1 20 HELIX 20 AC2 HIS B 206 LEU B 208 5 3 HELIX 21 AC3 SER B 209 THR B 231 1 23 LINK C PRO C 213 N SEP C 214 1555 1555 1.33 LINK C SEP C 214 N LEU C 215 1555 1555 1.32 LINK C PRO D 213 N SEP D 214 1555 1555 1.33 LINK C SEP D 214 N LEU D 215 1555 1555 1.33 CISPEP 1 SER B 105 HIS B 106 0 5.71 SITE 1 AC1 8 ASN A 42 SER A 45 PHE A 119 ILE A 168 SITE 2 AC1 8 HOH A 407 HOH A 540 THR C 217 HOH C 410 SITE 1 AC2 17 LYS A 49 ARG A 56 ARG A 129 TYR A 130 SITE 2 AC2 17 ASN A 175 VAL A 178 ASN A 226 ARG C 211 SITE 3 AC2 17 THR C 212 LEU C 215 PRO C 216 HOH C 401 SITE 4 AC2 17 HOH C 403 HOH C 404 HOH C 406 HOH C 407 SITE 5 AC2 17 HOH C 408 SITE 1 AC3 16 LYS A 49 ARG A 56 ARG A 129 TYR A 130 SITE 2 AC3 16 LEU A 174 ASN A 175 THR C 212 PRO C 213 SITE 3 AC3 16 PRO C 216 THR C 217 HOH C 401 HOH C 403 SITE 4 AC3 16 HOH C 404 HOH C 406 HOH C 407 HOH C 408 SITE 1 AC4 19 LYS B 49 ARG B 56 ARG B 129 TYR B 130 SITE 2 AC4 19 ASN B 175 VAL B 178 ASN B 226 HOH B 386 SITE 3 AC4 19 THR D 212 LEU D 215 PRO D 216 HOH D 301 SITE 4 AC4 19 HOH D 302 HOH D 303 HOH D 304 HOH D 306 SITE 5 AC4 19 HOH D 307 HOH D 308 HOH D 312 SITE 1 AC5 16 LYS B 49 ARG B 56 ARG B 129 TYR B 130 SITE 2 AC5 16 LEU B 174 ASN B 175 THR D 212 PRO D 213 SITE 3 AC5 16 PRO D 216 HOH D 301 HOH D 303 HOH D 304 SITE 4 AC5 16 HOH D 306 HOH D 307 HOH D 308 HOH D 312 CRYST1 63.062 70.283 128.778 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007765 0.00000 MASTER 490 0 3 21 0 0 20 6 0 0 0 40 END