HEADER RNA BINDING PROTEIN/METAL BINDING PROTEI30-JAN-15 4XXB TITLE CRYSTAL STRUCTURE OF HUMAN MDM2-RPL11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L11; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-12; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 293-334; COMPND 10 SYNONYM: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,P53-BINDING COMPND 11 PROTEIN MDM2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPL11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MDM2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MDM2, RPL11, MODPIPE MODEL OF UP, RNA BINDING PROTEIN-METAL BINDING KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHENG,Z.CHEN REVDAT 2 05-FEB-20 4XXB 1 JRNL REMARK REVDAT 1 12-AUG-15 4XXB 0 JRNL AUTH J.ZHENG,Y.LANG,Q.ZHANG,D.CUI,H.SUN,L.JIANG,Z.CHEN,R.ZHANG, JRNL AUTH 2 Y.GAO,W.TIAN,W.WU,J.TANG,Z.CHEN JRNL TITL STRUCTURE OF HUMAN MDM2 COMPLEXED WITH RPL11 REVEALS THE JRNL TITL 2 MOLECULAR BASIS OF P53 ACTIVATION JRNL REF GENES DEV. V. 29 1524 2015 JRNL REFN ISSN 0890-9369 JRNL PMID 26220995 JRNL DOI 10.1101/GAD.261792.115 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 8807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 447 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 517 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.24000 REMARK 3 B22 (A**2) : 2.24000 REMARK 3 B33 (A**2) : -3.36000 REMARK 3 B12 (A**2) : 1.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.396 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1572 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2115 ; 1.173 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 5.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;36.353 ;23.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;18.358 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1195 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4XXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 4V88 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 19.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.75267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.37633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.37633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.75267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 PRO A 11 REMARK 465 MET A 12 REMARK 465 PHE A 139 REMARK 465 SER A 140 REMARK 465 ILE A 141 REMARK 465 ALA A 142 REMARK 465 ASP A 143 REMARK 465 LYS A 144 REMARK 465 LYS A 145 REMARK 465 ARG A 146 REMARK 465 ARG A 147 REMARK 465 THR A 148 REMARK 465 GLY A 149 REMARK 465 CYS A 150 REMARK 465 ILE A 151 REMARK 465 GLY A 152 REMARK 465 ALA A 153 REMARK 465 SER B 290 REMARK 465 PHE B 291 REMARK 465 GLU B 292 REMARK 465 GLY B 335 REMARK 465 LYS B 336 REMARK 465 ASP B 337 REMARK 465 LYS B 338 REMARK 465 GLY B 339 REMARK 465 GLU B 340 REMARK 465 ILE B 341 REMARK 465 SER B 342 REMARK 465 GLU B 343 REMARK 465 LYS B 344 REMARK 465 ALA B 345 REMARK 465 LYS B 346 REMARK 465 LEU B 347 REMARK 465 GLU B 348 REMARK 465 ASN B 349 REMARK 465 SER B 350 REMARK 465 THR B 351 REMARK 465 GLN B 352 REMARK 465 ALA B 353 REMARK 465 GLU B 354 REMARK 465 GLU B 355 REMARK 465 GLY B 356 REMARK 465 PHE B 357 REMARK 465 ASP B 358 REMARK 465 VAL B 359 REMARK 465 PRO B 360 REMARK 465 ASP B 361 REMARK 465 CYS B 362 REMARK 465 LYS B 363 REMARK 465 LYS B 364 REMARK 465 THR B 365 REMARK 465 ILE B 366 REMARK 465 VAL B 367 REMARK 465 ASN B 368 REMARK 465 ASP B 369 REMARK 465 SER B 370 REMARK 465 ARG B 371 REMARK 465 GLU B 372 REMARK 465 SER B 373 REMARK 465 CYS B 374 REMARK 465 VAL B 375 REMARK 465 GLU B 376 REMARK 465 GLU B 377 REMARK 465 ASN B 378 REMARK 465 ASP B 379 REMARK 465 ASP B 380 REMARK 465 LYS B 381 REMARK 465 ILE B 382 REMARK 465 THR B 383 REMARK 465 GLN B 384 REMARK 465 ALA B 385 REMARK 465 SER B 386 REMARK 465 GLN B 387 REMARK 465 SER B 388 REMARK 465 GLN B 389 REMARK 465 GLU B 390 REMARK 465 SER B 391 REMARK 465 GLU B 392 REMARK 465 ASP B 393 REMARK 465 TYR B 394 REMARK 465 SER B 395 REMARK 465 GLN B 396 REMARK 465 PRO B 397 REMARK 465 SER B 398 REMARK 465 THR B 399 REMARK 465 SER B 400 REMARK 465 SER B 401 REMARK 465 SER B 402 REMARK 465 ILE B 403 REMARK 465 ILE B 404 REMARK 465 TYR B 405 REMARK 465 SER B 406 REMARK 465 SER B 407 REMARK 465 GLN B 408 REMARK 465 GLU B 409 REMARK 465 ASP B 410 REMARK 465 VAL B 411 REMARK 465 LYS B 412 REMARK 465 GLU B 413 REMARK 465 PHE B 414 REMARK 465 GLU B 415 REMARK 465 ARG B 416 REMARK 465 GLU B 417 REMARK 465 GLU B 418 REMARK 465 THR B 419 REMARK 465 GLN B 420 REMARK 465 ASP B 421 REMARK 465 LYS B 422 REMARK 465 GLU B 423 REMARK 465 GLU B 424 REMARK 465 SER B 425 REMARK 465 VAL B 426 REMARK 465 GLU B 427 REMARK 465 SER B 428 REMARK 465 SER B 429 REMARK 465 LEU B 430 REMARK 465 PRO B 431 REMARK 465 LEU B 432 REMARK 465 ASN B 433 REMARK 465 ALA B 434 REMARK 465 ILE B 435 REMARK 465 GLU B 436 REMARK 465 PRO B 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 HIS A 155 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 470 GLU B 332 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 -2.22 69.82 REMARK 500 PRO A 137 5.30 -61.93 REMARK 500 CYS B 308 -4.40 -144.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 25 SG REMARK 620 2 HIS B 318 NE2 91.2 REMARK 620 3 IMD A 201 N3 107.4 114.4 REMARK 620 4 HOH A 322 O 109.7 118.0 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 305 SG REMARK 620 2 CYS B 308 SG 112.0 REMARK 620 3 CYS B 319 SG 106.6 97.7 REMARK 620 4 CYS B 322 SG 106.2 116.5 117.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 DBREF 4XXB A 1 178 UNP P62913 RL11_HUMAN 1 178 DBREF 4XXB B 290 437 UNP Q00987 MDM2_HUMAN 290 437 SEQRES 1 A 178 MET ALA GLN ASP GLN GLY GLU LYS GLU ASN PRO MET ARG SEQRES 2 A 178 GLU LEU ARG ILE ARG LYS LEU CYS LEU ASN ILE CYS VAL SEQRES 3 A 178 GLY GLU SER GLY ASP ARG LEU THR ARG ALA ALA LYS VAL SEQRES 4 A 178 LEU GLU GLN LEU THR GLY GLN THR PRO VAL PHE SER LYS SEQRES 5 A 178 ALA ARG TYR THR VAL ARG SER PHE GLY ILE ARG ARG ASN SEQRES 6 A 178 GLU LYS ILE ALA VAL HIS CYS THR VAL ARG GLY ALA LYS SEQRES 7 A 178 ALA GLU GLU ILE LEU GLU LYS GLY LEU LYS VAL ARG GLU SEQRES 8 A 178 TYR GLU LEU ARG LYS ASN ASN PHE SER ASP THR GLY ASN SEQRES 9 A 178 PHE GLY PHE GLY ILE GLN GLU HIS ILE ASP LEU GLY ILE SEQRES 10 A 178 LYS TYR ASP PRO SER ILE GLY ILE TYR GLY LEU ASP PHE SEQRES 11 A 178 TYR VAL VAL LEU GLY ARG PRO GLY PHE SER ILE ALA ASP SEQRES 12 A 178 LYS LYS ARG ARG THR GLY CYS ILE GLY ALA LYS HIS ARG SEQRES 13 A 178 ILE SER LYS GLU GLU ALA MET ARG TRP PHE GLN GLN LYS SEQRES 14 A 178 TYR ASP GLY ILE ILE LEU PRO GLY LYS SEQRES 1 B 148 SER PHE GLU GLU ASP PRO GLU ILE SER LEU ALA ASP TYR SEQRES 2 B 148 TRP LYS CYS THR SER CYS ASN GLU MET ASN PRO PRO LEU SEQRES 3 B 148 PRO SER HIS CYS ASN ARG CYS TRP ALA LEU ARG GLU ASN SEQRES 4 B 148 TRP LEU PRO GLU ASP LYS GLY LYS ASP LYS GLY GLU ILE SEQRES 5 B 148 SER GLU LYS ALA LYS LEU GLU ASN SER THR GLN ALA GLU SEQRES 6 B 148 GLU GLY PHE ASP VAL PRO ASP CYS LYS LYS THR ILE VAL SEQRES 7 B 148 ASN ASP SER ARG GLU SER CYS VAL GLU GLU ASN ASP ASP SEQRES 8 B 148 LYS ILE THR GLN ALA SER GLN SER GLN GLU SER GLU ASP SEQRES 9 B 148 TYR SER GLN PRO SER THR SER SER SER ILE ILE TYR SER SEQRES 10 B 148 SER GLN GLU ASP VAL LYS GLU PHE GLU ARG GLU GLU THR SEQRES 11 B 148 GLN ASP LYS GLU GLU SER VAL GLU SER SER LEU PRO LEU SEQRES 12 B 148 ASN ALA ILE GLU PRO HET IMD A 201 5 HET BME A 202 4 HET ZN A 203 1 HET ZN B 501 1 HETNAM IMD IMIDAZOLE HETNAM BME BETA-MERCAPTOETHANOL HETNAM ZN ZINC ION FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 BME C2 H6 O S FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *84(H2 O) HELIX 1 AA1 GLY A 30 GLY A 45 1 16 HELIX 2 AA2 VAL A 57 GLY A 61 5 5 HELIX 3 AA3 ARG A 75 ARG A 90 1 16 HELIX 4 AA4 ASN A 97 PHE A 99 5 3 HELIX 5 AA5 GLU A 111 GLY A 116 5 6 HELIX 6 AA6 SER A 158 TYR A 170 1 13 HELIX 7 AA7 SER B 298 TYR B 302 5 5 SHEET 1 AA1 5 VAL A 49 LYS A 52 0 SHEET 2 AA1 5 LYS A 67 VAL A 74 -1 O ALA A 69 N SER A 51 SHEET 3 AA1 5 ARG A 16 CYS A 25 -1 N LEU A 22 O CYS A 72 SHEET 4 AA1 5 LEU A 128 GLY A 135 -1 O TYR A 131 N CYS A 21 SHEET 5 AA1 5 PHE A 105 ILE A 109 -1 N PHE A 105 O VAL A 132 SHEET 1 AA2 2 GLU A 93 ARG A 95 0 SHEET 2 AA2 2 ILE A 173 LEU A 175 1 O LEU A 175 N LEU A 94 SHEET 1 AA3 2 TRP B 303 LYS B 304 0 SHEET 2 AA3 2 MET B 311 ASN B 312 -1 O ASN B 312 N TRP B 303 LINK SG CYS A 25 ZN ZN A 203 1555 1555 2.42 LINK SG CYS B 305 ZN ZN B 501 1555 1555 2.40 LINK SG CYS B 308 ZN ZN B 501 1555 1555 2.52 LINK NE2 HIS B 318 ZN ZN A 203 1555 1555 2.07 LINK SG CYS B 319 ZN ZN B 501 1555 1555 2.27 LINK SG CYS B 322 ZN ZN B 501 1555 1555 2.17 LINK N3 IMD A 201 ZN ZN A 203 1555 1555 2.05 LINK ZN ZN A 203 O HOH A 322 1555 1555 2.25 CISPEP 1 LEU B 315 PRO B 316 0 11.49 SITE 1 AC1 7 CYS A 25 ILE A 68 ALA A 69 ZN A 203 SITE 2 AC1 7 PRO B 316 HIS B 318 ASN B 320 SITE 1 AC2 5 CYS A 21 TYR A 131 ASP B 294 PRO B 314 SITE 2 AC2 5 LEU B 315 SITE 1 AC3 4 CYS A 25 IMD A 201 HOH A 322 HIS B 318 SITE 1 AC4 4 CYS B 305 CYS B 308 CYS B 319 CYS B 322 CRYST1 58.307 58.307 115.129 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017151 0.009902 0.000000 0.00000 SCALE2 0.000000 0.019804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008686 0.00000 MASTER 459 0 4 7 9 0 6 6 0 0 0 26 END