HEADER OXIDOREDUCTASE 26-JAN-15 4XVA TITLE CRYSTAL STRUCTURE OF WILD TYPE CYTOCHROME C PEROXIDASE CAVEAT 4XVA THE MODELED BZI MOLECULES HAVE A HIGH VALUE OF REAL SPACE R CAVEAT 2 4XVA FACTOR (RSR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: UNP RESIDUES 69-361; COMPND 5 SYNONYM: CCP; COMPND 6 EC: 1.11.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CCP1, CCP, CPO, YKR066C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MODEL SYSTEM, FLEXIBILITY, THERMODYNAMICS, CRYPTIC SITE, TRANSIENT KEYWDS 2 PROTEIN SITES, LIGAND BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FISCHER,J.S.FRASER REVDAT 6 27-NOV-19 4XVA 1 REMARK REVDAT 5 20-SEP-17 4XVA 1 SOURCE REMARK REVDAT 4 29-JUL-15 4XVA 1 JRNL REVDAT 3 24-JUN-15 4XVA 1 JRNL REVDAT 2 04-MAR-15 4XVA 1 CAVEAT REMARK REVDAT 1 25-FEB-15 4XVA 0 JRNL AUTH M.FISCHER,B.K.SHOICHET,J.S.FRASER JRNL TITL ONE CRYSTAL, TWO TEMPERATURES: CRYOCOOLING PENALTIES ALTER JRNL TITL 2 LIGAND BINDING TO TRANSIENT PROTEIN SITES. JRNL REF CHEMBIOCHEM V. 16 1560 2015 JRNL REFN ESSN 1439-7633 JRNL PMID 26032594 JRNL DOI 10.1002/CBIC.201500196 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.FISCHER,R.G.COLEMAN,J.S.FRASER,B.K.SHOICHET REMARK 1 TITL INCORPORATION OF PROTEIN FLEXIBILITY AND CONFORMATIONAL REMARK 1 TITL 2 ENERGY PENALTIES IN DOCKING SCREENS TO IMPROVE LIGAND REMARK 1 TITL 3 DISCOVERY. REMARK 1 REF NAT CHEM V. 6 575 2014 REMARK 1 REFN ESSN 1755-4349 REMARK 1 PMID 24950326 REMARK 1 DOI 10.1038/NCHEM.1954 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 47483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 92.6811 - 6.8439 0.99 2857 150 0.2388 0.2827 REMARK 3 2 6.8439 - 5.4324 1.00 2733 141 0.2362 0.2382 REMARK 3 3 5.4324 - 4.7457 1.00 2685 146 0.1995 0.2454 REMARK 3 4 4.7457 - 4.3118 1.00 2686 131 0.1940 0.2353 REMARK 3 5 4.3118 - 4.0028 1.00 2616 172 0.2037 0.2376 REMARK 3 6 4.0028 - 3.7668 1.00 2652 143 0.2016 0.2545 REMARK 3 7 3.7668 - 3.5781 1.00 2674 133 0.2161 0.2610 REMARK 3 8 3.5781 - 3.4224 1.00 2629 140 0.2395 0.2923 REMARK 3 9 3.4224 - 3.2906 1.00 2624 150 0.2504 0.3374 REMARK 3 10 3.2906 - 3.1771 1.00 2623 125 0.2590 0.3357 REMARK 3 11 3.1771 - 3.0777 1.00 2639 146 0.2606 0.2838 REMARK 3 12 3.0777 - 2.9897 1.00 2590 152 0.2559 0.2726 REMARK 3 13 2.9897 - 2.9110 1.00 2648 121 0.2634 0.2849 REMARK 3 14 2.9110 - 2.8400 1.00 2649 133 0.2794 0.3563 REMARK 3 15 2.8400 - 2.7754 1.00 2614 154 0.2948 0.3740 REMARK 3 16 2.7754 - 2.7164 1.00 2611 132 0.3123 0.4057 REMARK 3 17 2.7164 - 2.6620 0.97 2527 157 0.3237 0.3691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 9973 REMARK 3 ANGLE : 1.394 13569 REMARK 3 CHIRALITY : 0.103 1325 REMARK 3 PLANARITY : 0.008 1778 REMARK 3 DIHEDRAL : 14.722 3602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : KOHZU DUAL DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.3.3.3 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47484 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 92.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COMPOUND SOAKED INTO CRYSTAL GROWN IN REMARK 280 EQUAL VOLUME OF 500MM MES BUFFER AND 25% MPD, PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.05500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.62500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.62500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.05500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 2 REMARK 465 THR G 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 109.82 -51.97 REMARK 500 ASP A 33 65.03 -102.96 REMARK 500 ASP A 61 12.41 -142.31 REMARK 500 PRO A 100 6.51 -66.54 REMARK 500 ASP C 18 -73.12 -58.40 REMARK 500 PRO C 100 4.30 -59.70 REMARK 500 ASP C 148 41.04 -97.95 REMARK 500 LYS E 12 114.07 -36.27 REMARK 500 ASP E 33 53.64 -98.17 REMARK 500 PRO E 100 2.49 -66.79 REMARK 500 SER G 15 178.95 179.95 REMARK 500 PRO G 100 8.41 -67.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C1342 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 HEM A1201 NA 89.0 REMARK 620 3 HEM A1201 NB 92.2 87.5 REMARK 620 4 HEM A1201 NC 87.9 172.5 85.9 REMARK 620 5 HEM A1201 ND 86.0 92.9 178.2 93.6 REMARK 620 6 HOH A1343 O 161.0 77.9 73.7 103.5 108.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C1201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 175 NE2 REMARK 620 2 HEM C1201 NA 90.6 REMARK 620 3 HEM C1201 NB 94.0 88.1 REMARK 620 4 HEM C1201 NC 88.8 175.6 87.6 REMARK 620 5 HEM C1201 ND 85.9 93.2 178.6 91.1 REMARK 620 6 HOH C1375 O 163.9 73.3 86.6 107.3 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E1201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 175 NE2 REMARK 620 2 HEM E1201 NA 94.8 REMARK 620 3 HEM E1201 NB 94.7 88.7 REMARK 620 4 HEM E1201 NC 86.0 174.6 85.9 REMARK 620 5 HEM E1201 ND 87.0 93.0 177.5 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM G1201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 175 NE2 REMARK 620 2 HEM G1201 NA 96.1 REMARK 620 3 HEM G1201 NB 87.2 87.8 REMARK 620 4 HEM G1201 NC 83.6 175.1 87.3 REMARK 620 5 HEM G1201 ND 95.1 92.0 177.8 92.9 REMARK 620 6 HOH G1309 O 156.3 79.8 69.5 98.5 108.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BZI A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BZI C 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM E 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BZI E 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM G 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XV4 RELATED DB: PDB REMARK 900 RELATED ID: 4XV5 RELATED DB: PDB REMARK 900 RELATED ID: 4XV6 RELATED DB: PDB REMARK 900 RELATED ID: 4XV7 RELATED DB: PDB REMARK 900 RELATED ID: 4XV8 RELATED DB: PDB REMARK 900 RELATED ID: 4XVA RELATED DB: PDB DBREF 4XVA A 2 294 UNP P00431 CCPR_YEAST 69 361 DBREF 4XVA C 2 294 UNP P00431 CCPR_YEAST 69 361 DBREF 4XVA E 2 294 UNP P00431 CCPR_YEAST 69 361 DBREF 4XVA G 2 294 UNP P00431 CCPR_YEAST 69 361 SEQRES 1 A 293 THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY ARG SEQRES 2 A 293 SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE ALA SEQRES 3 A 293 LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR ILE SEQRES 4 A 293 GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS THR SEQRES 5 A 293 SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SER SEQRES 6 A 293 TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN ASP SEQRES 7 A 293 PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE LEU SEQRES 8 A 293 GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER GLY SEQRES 9 A 293 ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN GLU SEQRES 10 A 293 MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG VAL SEQRES 11 A 293 ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG LEU SEQRES 12 A 293 PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR PHE SEQRES 13 A 293 PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL ALA SEQRES 14 A 293 LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU LYS SEQRES 15 A 293 ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN ASN SEQRES 16 A 293 VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN GLU SEQRES 17 A 293 ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU GLN SEQRES 18 A 293 TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR ASP SEQRES 19 A 293 TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE VAL SEQRES 20 A 293 LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS ASP SEQRES 21 A 293 PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY ILE SEQRES 22 A 293 THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE LYS SEQRES 23 A 293 THR LEU GLU GLU GLN GLY LEU SEQRES 1 C 293 THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY ARG SEQRES 2 C 293 SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE ALA SEQRES 3 C 293 LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR ILE SEQRES 4 C 293 GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS THR SEQRES 5 C 293 SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SER SEQRES 6 C 293 TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN ASP SEQRES 7 C 293 PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE LEU SEQRES 8 C 293 GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER GLY SEQRES 9 C 293 ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN GLU SEQRES 10 C 293 MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG VAL SEQRES 11 C 293 ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG LEU SEQRES 12 C 293 PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR PHE SEQRES 13 C 293 PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL ALA SEQRES 14 C 293 LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU LYS SEQRES 15 C 293 ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN ASN SEQRES 16 C 293 VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN GLU SEQRES 17 C 293 ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU GLN SEQRES 18 C 293 TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR ASP SEQRES 19 C 293 TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE VAL SEQRES 20 C 293 LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS ASP SEQRES 21 C 293 PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY ILE SEQRES 22 C 293 THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE LYS SEQRES 23 C 293 THR LEU GLU GLU GLN GLY LEU SEQRES 1 E 293 THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY ARG SEQRES 2 E 293 SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE ALA SEQRES 3 E 293 LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR ILE SEQRES 4 E 293 GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS THR SEQRES 5 E 293 SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SER SEQRES 6 E 293 TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN ASP SEQRES 7 E 293 PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE LEU SEQRES 8 E 293 GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER GLY SEQRES 9 E 293 ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN GLU SEQRES 10 E 293 MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG VAL SEQRES 11 E 293 ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG LEU SEQRES 12 E 293 PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR PHE SEQRES 13 E 293 PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL ALA SEQRES 14 E 293 LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU LYS SEQRES 15 E 293 ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN ASN SEQRES 16 E 293 VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN GLU SEQRES 17 E 293 ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU GLN SEQRES 18 E 293 TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR ASP SEQRES 19 E 293 TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE VAL SEQRES 20 E 293 LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS ASP SEQRES 21 E 293 PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY ILE SEQRES 22 E 293 THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE LYS SEQRES 23 E 293 THR LEU GLU GLU GLN GLY LEU SEQRES 1 G 293 THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY ARG SEQRES 2 G 293 SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE ALA SEQRES 3 G 293 LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR ILE SEQRES 4 G 293 GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS THR SEQRES 5 G 293 SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SER SEQRES 6 G 293 TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN ASP SEQRES 7 G 293 PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE LEU SEQRES 8 G 293 GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER GLY SEQRES 9 G 293 ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN GLU SEQRES 10 G 293 MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG VAL SEQRES 11 G 293 ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG LEU SEQRES 12 G 293 PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR PHE SEQRES 13 G 293 PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL ALA SEQRES 14 G 293 LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU LYS SEQRES 15 G 293 ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN ASN SEQRES 16 G 293 VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN GLU SEQRES 17 G 293 ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU GLN SEQRES 18 G 293 TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR ASP SEQRES 19 G 293 TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE VAL SEQRES 20 G 293 LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS ASP SEQRES 21 G 293 PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY ILE SEQRES 22 G 293 THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE LYS SEQRES 23 G 293 THR LEU GLU GLU GLN GLY LEU HET HEM A1201 43 HET BZI A1202 9 HET HEM C1201 43 HET BZI C1202 9 HET HEM E1201 43 HET BZI E1202 9 HET HEM G1201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM BZI BENZIMIDAZOLE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 BZI 3(C7 H6 N2) FORMUL 12 HOH *283(H2 O) HELIX 1 AA1 SER A 15 ASP A 33 1 19 HELIX 2 AA2 GLU A 35 ILE A 40 1 6 HELIX 3 AA3 TYR A 42 GLY A 55 1 14 HELIX 4 AA4 GLY A 69 ARG A 72 5 4 HELIX 5 AA5 PHE A 73 ASN A 78 1 6 HELIX 6 AA6 ASP A 79 GLY A 84 5 6 HELIX 7 AA7 LEU A 85 LEU A 92 1 8 HELIX 8 AA8 LEU A 92 PHE A 99 1 8 HELIX 9 AA9 SER A 103 MET A 119 1 17 HELIX 10 AB1 PRO A 134 THR A 138 5 5 HELIX 11 AB2 ASP A 150 ARG A 160 1 11 HELIX 12 AB3 ASN A 164 GLY A 173 1 10 HELIX 13 AB4 ALA A 174 LEU A 177 5 4 HELIX 14 AB5 HIS A 181 GLY A 186 1 6 HELIX 15 AB6 ASN A 200 GLU A 209 1 10 HELIX 16 AB7 LEU A 232 SER A 237 1 6 HELIX 17 AB8 ASP A 241 ASP A 254 1 14 HELIX 18 AB9 ASP A 254 ASN A 272 1 19 HELIX 19 AC1 LEU A 289 GLY A 293 5 5 HELIX 20 AC2 SER C 15 ASP C 33 1 19 HELIX 21 AC3 GLU C 35 ILE C 40 1 6 HELIX 22 AC4 TYR C 42 GLY C 55 1 14 HELIX 23 AC5 GLY C 69 ARG C 72 5 4 HELIX 24 AC6 PHE C 73 ASN C 78 1 6 HELIX 25 AC7 ASP C 79 ALA C 83 5 5 HELIX 26 AC8 LEU C 85 LEU C 92 1 8 HELIX 27 AC9 LEU C 92 PHE C 99 1 8 HELIX 28 AD1 SER C 103 MET C 119 1 17 HELIX 29 AD2 PRO C 134 THR C 138 5 5 HELIX 30 AD3 ASP C 150 LEU C 161 1 12 HELIX 31 AD4 ASN C 164 MET C 172 1 9 HELIX 32 AD5 GLY C 173 LEU C 177 5 5 HELIX 33 AD6 HIS C 181 GLY C 186 1 6 HELIX 34 AD7 ASN C 200 GLU C 209 1 10 HELIX 35 AD8 LEU C 232 SER C 237 1 6 HELIX 36 AD9 LEU C 238 GLN C 240 5 3 HELIX 37 AE1 ASP C 241 ASP C 254 1 14 HELIX 38 AE2 ASP C 254 ASN C 272 1 19 HELIX 39 AE3 LEU C 289 GLY C 293 5 5 HELIX 40 AE4 SER E 15 ASP E 33 1 19 HELIX 41 AE5 GLU E 35 ILE E 40 1 6 HELIX 42 AE6 TYR E 42 GLY E 55 1 14 HELIX 43 AE7 GLY E 69 ARG E 72 5 4 HELIX 44 AE8 PHE E 73 ASN E 78 1 6 HELIX 45 AE9 ASP E 79 GLY E 84 5 6 HELIX 46 AF1 LEU E 85 PHE E 99 1 15 HELIX 47 AF2 SER E 103 MET E 119 1 17 HELIX 48 AF3 PRO E 134 THR E 138 5 5 HELIX 49 AF4 ASP E 150 ARG E 160 1 11 HELIX 50 AF5 ASN E 164 MET E 172 1 9 HELIX 51 AF6 GLY E 173 LEU E 177 5 5 HELIX 52 AF7 ASN E 200 GLU E 209 1 10 HELIX 53 AF8 LEU E 232 SER E 237 1 6 HELIX 54 AF9 ASP E 241 ASP E 254 1 14 HELIX 55 AG1 ASP E 254 ASN E 272 1 19 HELIX 56 AG2 THR E 288 GLY E 293 1 6 HELIX 57 AG3 SER G 15 ASP G 33 1 19 HELIX 58 AG4 TYR G 42 GLY G 55 1 14 HELIX 59 AG5 GLY G 69 ARG G 72 5 4 HELIX 60 AG6 PHE G 73 ASN G 78 1 6 HELIX 61 AG7 ASP G 79 GLY G 84 5 6 HELIX 62 AG8 LEU G 85 PHE G 99 1 15 HELIX 63 AG9 SER G 103 MET G 119 1 17 HELIX 64 AH1 PRO G 134 THR G 138 5 5 HELIX 65 AH2 ASP G 150 ARG G 160 1 11 HELIX 66 AH3 ASN G 164 GLY G 173 1 10 HELIX 67 AH4 ALA G 174 LEU G 177 5 4 HELIX 68 AH5 HIS G 181 GLY G 186 1 6 HELIX 69 AH6 ASN G 200 GLU G 209 1 10 HELIX 70 AH7 LEU G 232 ASP G 241 1 10 HELIX 71 AH8 ASP G 241 ASP G 254 1 14 HELIX 72 AH9 ASP G 254 ASN G 272 1 19 SHEET 1 AA1 2 HIS A 6 VAL A 7 0 SHEET 2 AA1 2 ILE A 274 THR A 275 1 O THR A 275 N HIS A 6 SHEET 1 AA2 2 LYS A 179 THR A 180 0 SHEET 2 AA2 2 GLY A 189 PRO A 190 -1 O GLY A 189 N THR A 180 SHEET 1 AA3 3 TRP A 211 LYS A 215 0 SHEET 2 AA3 3 GLU A 221 SER A 225 -1 O ASP A 224 N LYS A 212 SHEET 3 AA3 3 MET A 230 MET A 231 -1 O MET A 231 N TRP A 223 SHEET 1 AA4 2 HIS C 6 VAL C 7 0 SHEET 2 AA4 2 ILE C 274 THR C 275 1 O THR C 275 N HIS C 6 SHEET 1 AA5 3 LYS C 212 LYS C 215 0 SHEET 2 AA5 3 GLU C 221 ASP C 224 -1 O ASP C 224 N LYS C 212 SHEET 3 AA5 3 MET C 230 MET C 231 -1 O MET C 231 N TRP C 223 SHEET 1 AA6 2 HIS E 6 VAL E 7 0 SHEET 2 AA6 2 ILE E 274 THR E 275 1 O THR E 275 N HIS E 6 SHEET 1 AA7 2 LYS E 179 THR E 180 0 SHEET 2 AA7 2 GLY E 189 PRO E 190 -1 O GLY E 189 N THR E 180 SHEET 1 AA8 3 TRP E 211 LYS E 215 0 SHEET 2 AA8 3 GLU E 221 SER E 225 -1 O ASP E 224 N LYS E 212 SHEET 3 AA8 3 MET E 230 MET E 231 -1 O MET E 231 N TRP E 223 SHEET 1 AA9 2 HIS G 6 VAL G 7 0 SHEET 2 AA9 2 ILE G 274 THR G 275 1 O THR G 275 N HIS G 6 SHEET 1 AB1 2 LYS G 179 THR G 180 0 SHEET 2 AB1 2 GLY G 189 PRO G 190 -1 O GLY G 189 N THR G 180 SHEET 1 AB2 3 TRP G 211 LYS G 215 0 SHEET 2 AB2 3 GLU G 221 SER G 225 -1 O GLN G 222 N GLU G 214 SHEET 3 AB2 3 MET G 230 MET G 231 -1 O MET G 231 N TRP G 223 LINK NE2 HIS A 175 FE HEM A1201 1555 1555 2.21 LINK NE2 HIS C 175 FE HEM C1201 1555 1555 2.16 LINK NE2 HIS E 175 FE HEM E1201 1555 1555 2.10 LINK NE2 HIS G 175 FE HEM G1201 1555 1555 2.37 LINK FE HEM A1201 O HOH A1343 1555 1555 2.39 LINK FE HEM C1201 O HOH C1375 1555 1555 2.43 LINK FE HEM G1201 O HOH G1309 1555 1555 2.39 SITE 1 AC1 21 PRO A 44 ARG A 48 TRP A 51 PRO A 145 SITE 2 AC1 21 ASP A 146 LEU A 171 MET A 172 ALA A 174 SITE 3 AC1 21 HIS A 175 GLY A 178 LYS A 179 THR A 180 SITE 4 AC1 21 HIS A 181 ASN A 184 SER A 185 TRP A 191 SITE 5 AC1 21 LEU A 232 HOH A1313 HOH A1320 HOH A1322 SITE 6 AC1 21 HOH A1343 SITE 1 AC2 7 PHE A 89 LEU A 92 GLU A 93 HIS A 96 SITE 2 AC2 7 SER A 104 LEU A 107 PHE A 108 SITE 1 AC3 18 PRO C 44 ARG C 48 TRP C 51 PRO C 145 SITE 2 AC3 18 ASP C 146 ALA C 174 HIS C 175 GLY C 178 SITE 3 AC3 18 LYS C 179 THR C 180 HIS C 181 ASN C 184 SITE 4 AC3 18 SER C 185 TRP C 191 LEU C 232 HOH C1331 SITE 5 AC3 18 HOH C1335 HOH C1375 SITE 1 AC4 6 PHE C 89 LEU C 92 GLU C 93 HIS C 96 SITE 2 AC4 6 SER C 104 PHE C 108 SITE 1 AC5 19 PRO E 44 VAL E 47 ARG E 48 TRP E 51 SITE 2 AC5 19 PRO E 145 ASP E 146 LEU E 171 ALA E 174 SITE 3 AC5 19 HIS E 175 GLY E 178 LYS E 179 THR E 180 SITE 4 AC5 19 HIS E 181 ASN E 184 SER E 185 TRP E 191 SITE 5 AC5 19 LEU E 232 HOH E1346 HOH E1372 SITE 1 AC6 4 PHE E 89 GLU E 93 HIS E 96 SER E 104 SITE 1 AC7 16 PRO G 44 ARG G 48 TRP G 51 PRO G 145 SITE 2 AC7 16 LEU G 171 MET G 172 ALA G 174 HIS G 175 SITE 3 AC7 16 LYS G 179 THR G 180 HIS G 181 ASN G 184 SITE 4 AC7 16 SER G 185 TRP G 191 LEU G 232 HOH G1309 CRYST1 84.110 104.760 185.250 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005398 0.00000 MASTER 379 0 7 72 26 0 25 6 0 0 0 92 END