HEADER DNA BINDING PROTEIN/DNA 19-JAN-15 4XQQ TITLE CRYSTAL STRUCTURE OF AGRA LYTTR DOMAIN IN COMPLEX WITH PROMOTERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACCESSORY GENE REGULATOR A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LYTTR DOMAIN (UNP RESIDUES 139-238); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*TP*CP*GP*AP*CP*TP*AP*GP*TP*TP*AP*AP*GP*AP*AP*A)- COMPND 8 3'); COMPND 9 CHAIN: E, G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*AP*TP*TP*TP*CP*TP*TP*AP*AP*CP*TP*AP*GP*TP*CP*G)- COMPND 13 3'); COMPND 14 CHAIN: F, H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN COL); SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: AGRA, SACOL2026; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.GOPAL,K.RAJASREE REVDAT 3 25-DEC-19 4XQQ 1 REMARK REVDAT 2 18-DEC-19 4XQQ 1 JRNL REMARK REVDAT 1 27-APR-16 4XQQ 0 JRNL AUTH K.RAJASREE,A.FASIM,B.GOPAL JRNL TITL CONFORMATIONAL FEATURES OF THESTAPHYLOCOCCUS JRNL TITL 2 AUREUSAGRA-PROMOTER INTERACTIONS RATIONALIZE QUORUM-SENSING JRNL TITL 3 TRIGGERED GENE EXPRESSION. JRNL REF BIOCHEM BIOPHYS REP V. 6 124 2016 JRNL REFN ESSN 2405-5808 JRNL PMID 28955870 JRNL DOI 10.1016/J.BBREP.2016.03.012 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3186 REMARK 3 NUCLEIC ACID ATOMS : 1300 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.75000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 2.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -10.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.565 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.650 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4704 ; 0.008 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 3674 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6623 ; 1.242 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8409 ; 1.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 6.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;34.084 ;23.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;12.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.735 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 671 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4527 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1166 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 4.783 ;11.396 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1579 ; 4.782 ;11.393 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1968 ; 7.794 ;17.089 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1969 ; 7.793 ;17.092 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3123 ; 4.745 ;12.115 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3122 ; 4.744 ;12.115 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4655 ; 7.837 ;18.154 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 19544 ;13.826 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 19545 ;13.826 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 8 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 141 237 B 141 237 11142 0.09 0.05 REMARK 3 2 A 140 238 C 140 238 10650 0.12 0.05 REMARK 3 3 A 140 237 D 140 237 10170 0.11 0.05 REMARK 3 4 B 141 237 C 141 237 10008 0.11 0.05 REMARK 3 5 B 141 237 D 141 237 9980 0.09 0.05 REMARK 3 6 C 140 237 D 140 237 9544 0.11 0.05 REMARK 3 7 E 1 16 G 1 16 2482 0.08 0.05 REMARK 3 8 F 1 16 H 1 16 2714 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALA REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13297 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 62.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% TACSIMATE, 0.1M MES MONOHYDRATE PH REMARK 280 6.0, 25% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.51000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.51000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 72.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -39.51000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 72.80000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -42.85747 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 72.80000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 62.00971 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 139 REMARK 465 SER B 139 REMARK 465 VAL B 140 REMARK 465 SER C 139 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 SER B 149 OG REMARK 470 ASN B 177 CG OD1 ND2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 SER B 215 OG REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 GLU C 141 CG CD OE1 OE2 REMARK 470 THR C 166 OG1 CG2 REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 SER C 168 OG REMARK 470 HIS C 169 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 181 CG CD OE1 OE2 REMARK 470 LYS C 187 CG CD CE NZ REMARK 470 GLU C 188 CG CD OE1 OE2 REMARK 470 ASN C 201 CG OD1 ND2 REMARK 470 GLU C 211 CG CD OE1 OE2 REMARK 470 LYS C 216 CG CD CE NZ REMARK 470 LYS C 223 CG CD CE NZ REMARK 470 VAL C 232 CG1 CG2 REMARK 470 ASN C 234 CG OD1 ND2 REMARK 470 LYS C 236 CG CD CE NZ REMARK 470 LYS C 237 CG CD CE NZ REMARK 470 ILE D 143 CG1 CG2 CD1 REMARK 470 SER D 164 OG REMARK 470 THR D 166 OG1 CG2 REMARK 470 LYS D 167 CG CD CE NZ REMARK 470 SER D 168 OG REMARK 470 HIS D 169 CG ND1 CD2 CE1 NE2 REMARK 470 ASP D 176 CG OD1 OD2 REMARK 470 ASN D 177 CG OD1 ND2 REMARK 470 GLN D 179 CG CD OE1 NE2 REMARK 470 GLU D 181 CG CD OE1 OE2 REMARK 470 LYS D 187 CG CD CE NZ REMARK 470 GLU D 188 CG CD OE1 OE2 REMARK 470 GLN D 191 CG CD OE1 NE2 REMARK 470 ASN D 201 CG OD1 ND2 REMARK 470 SER D 202 OG REMARK 470 LYS D 216 CG CD CE NZ REMARK 470 GLU D 217 CG CD OE1 OE2 REMARK 470 LYS D 225 CG CD CE NZ REMARK 470 ARG D 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 236 CG CD CE NZ REMARK 470 LYS D 237 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 147 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC F 10 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC H 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 200 150.00 -171.58 REMARK 500 LYS A 225 34.84 70.05 REMARK 500 HIS B 200 148.83 -173.24 REMARK 500 LYS B 225 -4.64 81.45 REMARK 500 HIS C 200 144.75 -174.03 REMARK 500 LYS C 225 -4.63 79.61 REMARK 500 HIS D 200 144.46 -174.48 REMARK 500 LYS D 225 -4.44 81.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XQJ RELATED DB: PDB REMARK 900 RELATED ID: 4XQN RELATED DB: PDB DBREF 4XQQ A 139 238 UNP Q5HEG2 AGRA_STAAC 139 238 DBREF 4XQQ B 139 238 UNP Q5HEG2 AGRA_STAAC 139 238 DBREF 4XQQ C 139 238 UNP Q5HEG2 AGRA_STAAC 139 238 DBREF 4XQQ D 139 238 UNP Q5HEG2 AGRA_STAAC 139 238 DBREF 4XQQ E 1 16 PDB 4XQQ 4XQQ 1 16 DBREF 4XQQ F 1 16 PDB 4XQQ 4XQQ 1 16 DBREF 4XQQ G 1 16 PDB 4XQQ 4XQQ 1 16 DBREF 4XQQ H 1 16 PDB 4XQQ 4XQQ 1 16 SEQRES 1 A 100 SER VAL GLU THR ILE GLU LEU LYS ARG GLY SER ASN SER SEQRES 2 A 100 VAL TYR VAL GLN TYR ASP ASP ILE MET PHE PHE GLU SER SEQRES 3 A 100 SER THR LYS SER HIS ARG LEU ILE ALA HIS LEU ASP ASN SEQRES 4 A 100 ARG GLN ILE GLU PHE TYR GLY ASN LEU LYS GLU LEU SER SEQRES 5 A 100 GLN LEU ASP ASP ARG PHE PHE ARG CYS HIS ASN SER PHE SEQRES 6 A 100 VAL VAL ASN ARG HIS ASN ILE GLU SER ILE ASP SER LYS SEQRES 7 A 100 GLU ARG ILE VAL TYR PHE LYS ASN LYS GLU HIS CYS TYR SEQRES 8 A 100 ALA SER VAL ARG ASN VAL LYS LYS ILE SEQRES 1 B 100 SER VAL GLU THR ILE GLU LEU LYS ARG GLY SER ASN SER SEQRES 2 B 100 VAL TYR VAL GLN TYR ASP ASP ILE MET PHE PHE GLU SER SEQRES 3 B 100 SER THR LYS SER HIS ARG LEU ILE ALA HIS LEU ASP ASN SEQRES 4 B 100 ARG GLN ILE GLU PHE TYR GLY ASN LEU LYS GLU LEU SER SEQRES 5 B 100 GLN LEU ASP ASP ARG PHE PHE ARG CYS HIS ASN SER PHE SEQRES 6 B 100 VAL VAL ASN ARG HIS ASN ILE GLU SER ILE ASP SER LYS SEQRES 7 B 100 GLU ARG ILE VAL TYR PHE LYS ASN LYS GLU HIS CYS TYR SEQRES 8 B 100 ALA SER VAL ARG ASN VAL LYS LYS ILE SEQRES 1 C 100 SER VAL GLU THR ILE GLU LEU LYS ARG GLY SER ASN SER SEQRES 2 C 100 VAL TYR VAL GLN TYR ASP ASP ILE MET PHE PHE GLU SER SEQRES 3 C 100 SER THR LYS SER HIS ARG LEU ILE ALA HIS LEU ASP ASN SEQRES 4 C 100 ARG GLN ILE GLU PHE TYR GLY ASN LEU LYS GLU LEU SER SEQRES 5 C 100 GLN LEU ASP ASP ARG PHE PHE ARG CYS HIS ASN SER PHE SEQRES 6 C 100 VAL VAL ASN ARG HIS ASN ILE GLU SER ILE ASP SER LYS SEQRES 7 C 100 GLU ARG ILE VAL TYR PHE LYS ASN LYS GLU HIS CYS TYR SEQRES 8 C 100 ALA SER VAL ARG ASN VAL LYS LYS ILE SEQRES 1 D 100 SER VAL GLU THR ILE GLU LEU LYS ARG GLY SER ASN SER SEQRES 2 D 100 VAL TYR VAL GLN TYR ASP ASP ILE MET PHE PHE GLU SER SEQRES 3 D 100 SER THR LYS SER HIS ARG LEU ILE ALA HIS LEU ASP ASN SEQRES 4 D 100 ARG GLN ILE GLU PHE TYR GLY ASN LEU LYS GLU LEU SER SEQRES 5 D 100 GLN LEU ASP ASP ARG PHE PHE ARG CYS HIS ASN SER PHE SEQRES 6 D 100 VAL VAL ASN ARG HIS ASN ILE GLU SER ILE ASP SER LYS SEQRES 7 D 100 GLU ARG ILE VAL TYR PHE LYS ASN LYS GLU HIS CYS TYR SEQRES 8 D 100 ALA SER VAL ARG ASN VAL LYS LYS ILE SEQRES 1 E 16 DT DC DG DA DC DT DA DG DT DT DA DA DG SEQRES 2 E 16 DA DA DA SEQRES 1 F 16 DA DT DT DT DC DT DT DA DA DC DT DA DG SEQRES 2 F 16 DT DC DG SEQRES 1 G 16 DT DC DG DA DC DT DA DG DT DT DA DA DG SEQRES 2 G 16 DA DA DA SEQRES 1 H 16 DA DT DT DT DC DT DT DA DA DC DT DA DG SEQRES 2 H 16 DT DC DG HELIX 1 AA1 ASN A 185 ASP A 193 1 9 HELIX 2 AA2 ASN A 234 ILE A 238 5 5 HELIX 3 AA3 ASN B 185 ASP B 193 1 9 HELIX 4 AA4 ASN B 234 ILE B 238 5 5 HELIX 5 AA5 ASN C 185 ASP C 193 1 9 HELIX 6 AA6 ASN C 234 ILE C 238 5 5 HELIX 7 AA7 ASN D 185 ASP D 193 1 9 HELIX 8 AA8 ASN D 234 ILE D 238 5 5 SHEET 1 AA1 2 THR A 142 ARG A 147 0 SHEET 2 AA1 2 ASN A 150 GLN A 155 -1 O VAL A 152 N LEU A 145 SHEET 1 AA2 5 GLN A 179 TYR A 183 0 SHEET 2 AA2 5 ARG A 170 LEU A 175 -1 N LEU A 171 O PHE A 182 SHEET 3 AA2 5 ILE A 159 SER A 164 -1 N PHE A 161 O HIS A 174 SHEET 4 AA2 5 PHE A 203 ASN A 206 -1 O VAL A 204 N PHE A 162 SHEET 5 AA2 5 PHE A 196 HIS A 200 -1 N PHE A 197 O VAL A 205 SHEET 1 AA3 5 HIS A 227 TYR A 229 0 SHEET 2 AA3 5 ILE A 219 PHE A 222 -1 N VAL A 220 O CYS A 228 SHEET 3 AA3 5 ILE A 210 ASP A 214 -1 N SER A 212 O TYR A 221 SHEET 4 AA3 5 ASN C 150 GLN C 155 -1 O TYR C 153 N GLU A 211 SHEET 5 AA3 5 THR C 142 ARG C 147 -1 N LEU C 145 O VAL C 152 SHEET 1 AA4 5 THR B 142 ARG B 147 0 SHEET 2 AA4 5 ASN B 150 GLN B 155 -1 O ASN B 150 N ARG B 147 SHEET 3 AA4 5 ILE C 210 ASP C 214 -1 O GLU C 211 N TYR B 153 SHEET 4 AA4 5 ILE C 219 PHE C 222 -1 O TYR C 221 N SER C 212 SHEET 5 AA4 5 HIS C 227 TYR C 229 -1 O CYS C 228 N VAL C 220 SHEET 1 AA5 5 GLN B 179 TYR B 183 0 SHEET 2 AA5 5 ARG B 170 LEU B 175 -1 N LEU B 171 O PHE B 182 SHEET 3 AA5 5 ILE B 159 SER B 164 -1 N PHE B 161 O HIS B 174 SHEET 4 AA5 5 PHE B 203 ASN B 206 -1 O VAL B 204 N PHE B 162 SHEET 5 AA5 5 PHE B 196 HIS B 200 -1 N PHE B 197 O VAL B 205 SHEET 1 AA6 3 ILE B 210 ASP B 214 0 SHEET 2 AA6 3 ILE B 219 PHE B 222 -1 O TYR B 221 N SER B 212 SHEET 3 AA6 3 HIS B 227 TYR B 229 -1 O CYS B 228 N VAL B 220 SHEET 1 AA7 5 GLN C 179 TYR C 183 0 SHEET 2 AA7 5 ARG C 170 LEU C 175 -1 N LEU C 171 O PHE C 182 SHEET 3 AA7 5 ILE C 159 SER C 164 -1 N PHE C 161 O HIS C 174 SHEET 4 AA7 5 PHE C 203 ASN C 206 -1 O VAL C 204 N PHE C 162 SHEET 5 AA7 5 PHE C 196 HIS C 200 -1 N PHE C 197 O VAL C 205 SHEET 1 AA8 2 THR D 142 ARG D 147 0 SHEET 2 AA8 2 ASN D 150 GLN D 155 -1 O VAL D 152 N LEU D 145 SHEET 1 AA9 5 GLN D 179 TYR D 183 0 SHEET 2 AA9 5 ARG D 170 LEU D 175 -1 N LEU D 171 O PHE D 182 SHEET 3 AA9 5 ILE D 159 SER D 164 -1 N PHE D 161 O HIS D 174 SHEET 4 AA9 5 PHE D 203 ASN D 206 -1 O VAL D 204 N PHE D 162 SHEET 5 AA9 5 PHE D 196 HIS D 200 -1 N PHE D 197 O VAL D 205 SHEET 1 AB1 3 ILE D 210 ASP D 214 0 SHEET 2 AB1 3 ILE D 219 PHE D 222 -1 O TYR D 221 N SER D 212 SHEET 3 AB1 3 HIS D 227 TYR D 229 -1 O CYS D 228 N VAL D 220 CRYST1 79.020 145.600 62.100 90.00 93.09 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012655 0.000000 0.000683 0.00000 SCALE2 0.000000 0.006868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016127 0.00000 MASTER 375 0 0 8 40 0 0 6 0 0 0 40 END