HEADER TRANSFERASE 19-JAN-15 4XQG TITLE CRYSTAL STRUCTURE OF THE HOMOSPERMIDINE SYNTHASE (HSS) VARIANT E237Q TITLE 2 FROM BLASTOCHLORIS VIRIDIS IN COMPLEX WITH NAD. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSS; COMPND 5 EC: 2.5.1.44; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 3 ORGANISM_TAXID: 1079; SOURCE 4 GENE: HSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM14 KEYWDS HOMOSPERMIDINE SYNTHASE, OXIDOREDUCTASE, TRANSFERASE, ROSSMAN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR S.KROSSA REVDAT 2 07-MAR-18 4XQG 1 REMARK REVDAT 1 27-JAN-16 4XQG 0 JRNL AUTH S.KROSSA,A.FAUST,D.OBER,A.J.SCHEIDIG JRNL TITL COMPREHENSIVE STRUCTURAL CHARACTERIZATION OF THE BACTERIAL JRNL TITL 2 HOMOSPERMIDINE SYNTHASE-AN ESSENTIAL ENZYME OF THE POLYAMINE JRNL TITL 3 METABOLISM. JRNL REF SCI REP V. 6 19501 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26776105 JRNL DOI 10.1038/SREP19501 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 188912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 9510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9977 - 4.2878 0.99 6463 332 0.1369 0.1553 REMARK 3 2 4.2878 - 3.4492 0.98 6240 330 0.1220 0.1402 REMARK 3 3 3.4492 - 3.0270 0.99 6266 334 0.1311 0.1515 REMARK 3 4 3.0270 - 2.7566 0.99 6192 348 0.1300 0.1585 REMARK 3 5 2.7566 - 2.5626 1.00 6253 309 0.1199 0.1546 REMARK 3 6 2.5626 - 2.4137 0.97 6016 337 0.1076 0.1387 REMARK 3 7 2.4137 - 2.2944 0.99 6153 333 0.1075 0.1466 REMARK 3 8 2.2944 - 2.1956 0.99 6157 329 0.1057 0.1415 REMARK 3 9 2.1956 - 2.1119 0.99 6130 337 0.1048 0.1441 REMARK 3 10 2.1119 - 2.0397 0.99 6149 322 0.1074 0.1439 REMARK 3 11 2.0397 - 1.9764 0.99 6128 325 0.1065 0.1484 REMARK 3 12 1.9764 - 1.9203 0.98 6040 319 0.1114 0.1448 REMARK 3 13 1.9203 - 1.8701 0.99 6103 324 0.1095 0.1468 REMARK 3 14 1.8701 - 1.8247 0.99 6077 313 0.1125 0.1475 REMARK 3 15 1.8247 - 1.7835 0.99 6139 313 0.1173 0.1623 REMARK 3 16 1.7835 - 1.7457 0.99 6119 315 0.1186 0.1727 REMARK 3 17 1.7457 - 1.7110 0.99 6092 277 0.1250 0.1788 REMARK 3 18 1.7110 - 1.6789 0.99 6120 322 0.1277 0.1778 REMARK 3 19 1.6789 - 1.6490 0.97 5940 319 0.1369 0.1891 REMARK 3 20 1.6490 - 1.6212 0.96 5857 329 0.1464 0.1837 REMARK 3 21 1.6212 - 1.5951 0.98 6070 313 0.1481 0.1836 REMARK 3 22 1.5951 - 1.5707 0.99 6054 306 0.1495 0.1846 REMARK 3 23 1.5707 - 1.5477 0.99 6069 309 0.1633 0.1981 REMARK 3 24 1.5477 - 1.5259 0.99 6070 327 0.1727 0.2273 REMARK 3 25 1.5259 - 1.5054 0.98 6015 325 0.1861 0.2275 REMARK 3 26 1.5054 - 1.4859 0.98 6006 324 0.1934 0.2421 REMARK 3 27 1.4859 - 1.4674 0.98 5962 345 0.2113 0.2665 REMARK 3 28 1.4674 - 1.4498 0.94 5784 310 0.2349 0.2727 REMARK 3 29 1.4498 - 1.4330 0.87 5312 305 0.2584 0.2727 REMARK 3 30 1.4330 - 1.4169 0.56 3426 179 0.2945 0.3474 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7965 REMARK 3 ANGLE : 1.363 10886 REMARK 3 CHIRALITY : 0.257 1167 REMARK 3 PLANARITY : 0.006 1423 REMARK 3 DIHEDRAL : 14.439 2888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 189622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.417 REMARK 200 RESOLUTION RANGE LOW (A) : 89.794 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.88600 REMARK 200 R SYM FOR SHELL (I) : 0.88600 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4PLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-ACETATE, AMMONIUMACETATE, PEG REMARK 280 10000, NDSB-201, AGMATINE, 1,4-DIAMINOBUTANE, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.82000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 461 HH22 ARG B 476 1.53 REMARK 500 OE2 GLU B 187 HH12 ARG B 428 1.56 REMARK 500 O HOH A 783 O HOH A 973 1.96 REMARK 500 O HOH A 1106 O HOH A 1107 2.02 REMARK 500 OD1 ASP B 466 O HOH B 1142 2.02 REMARK 500 O2 1PS B 510 O HOH B 884 2.06 REMARK 500 O HOH B 900 O HOH B 1123 2.06 REMARK 500 O HOH A 1117 O HOH A 1119 2.06 REMARK 500 O HOH B 746 O HOH B 986 2.07 REMARK 500 O HOH A 876 O HOH A 900 2.10 REMARK 500 O HOH B 1151 O HOH B 1156 2.11 REMARK 500 O HOH B 978 O HOH B 1043 2.11 REMARK 500 OD1 ASP B 426 O HOH B 856 2.12 REMARK 500 O HOH A 1153 O HOH B 765 2.13 REMARK 500 O HOH B 1078 O HOH B 1084 2.14 REMARK 500 O HOH A 809 O HOH A 1027 2.15 REMARK 500 O HOH A 1103 O HOH B 1059 2.16 REMARK 500 O HOH B 858 O HOH B 981 2.16 REMARK 500 O HOH A 819 O HOH B 1090 2.16 REMARK 500 O HOH A 841 O HOH A 1020 2.17 REMARK 500 OD2 ASP A 261 O HOH A 601 2.17 REMARK 500 NZ LYS A 171 O HOH A 913 2.18 REMARK 500 O HOH A 783 O HOH A 1040 2.18 REMARK 500 O HOH A 1076 O HOH A 1109 2.18 REMARK 500 O HOH A 1096 O HOH A 1099 2.19 REMARK 500 OD1 ASP A 466 O HOH A 871 2.19 REMARK 500 OD2 ASP B 477 O HOH B 1143 2.19 REMARK 500 O HOH B 645 O HOH B 1096 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 41 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 38.60 -96.60 REMARK 500 VAL A 115 146.52 -172.43 REMARK 500 CYS A 159 63.13 -118.78 REMARK 500 ASN A 162 100.31 -161.62 REMARK 500 SER A 230 115.59 -28.66 REMARK 500 MET A 287 -146.58 57.39 REMARK 500 MET A 287 -144.98 50.79 REMARK 500 ASN A 373 -69.97 71.43 REMARK 500 ASP A 466 86.52 -157.76 REMARK 500 PHE B 19 59.57 -140.79 REMARK 500 LEU B 120 129.11 -39.78 REMARK 500 CYS B 159 63.59 -114.47 REMARK 500 ASN B 162 101.73 -161.77 REMARK 500 SER B 230 117.92 -31.17 REMARK 500 MET B 287 -146.66 58.53 REMARK 500 MET B 287 -143.17 47.00 REMARK 500 ASN B 373 -74.80 74.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS B 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PLP RELATED DB: PDB REMARK 900 4PLP CONTAINS THE WILD-TYPE OF THE PROTEIN DBREF 4XQG A 3 477 UNP O32323 HSS_BLAVI 3 477 DBREF 4XQG B 3 477 UNP O32323 HSS_BLAVI 3 477 SEQADV 4XQG GLN A 237 UNP O32323 GLU 237 ENGINEERED MUTATION SEQADV 4XQG GLN B 237 UNP O32323 GLU 237 ENGINEERED MUTATION SEQRES 1 A 475 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 A 475 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 A 475 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 A 475 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 A 475 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 A 475 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 A 475 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 A 475 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 A 475 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 A 475 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 A 475 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 A 475 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 A 475 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 A 475 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 A 475 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 A 475 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 A 475 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 A 475 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 A 475 GLN GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 A 475 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 A 475 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 A 475 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 A 475 GLN TYR GLY PHE LEU VAL THR HIS ASN GLU SER ILE SER SEQRES 24 A 475 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 A 475 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 A 475 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 A 475 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 A 475 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 A 475 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 A 475 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 A 475 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 A 475 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 A 475 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 A 475 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 A 475 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 A 475 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 A 475 ARG ASN VAL LEU VAL ARG ASP SEQRES 1 B 475 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 B 475 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 B 475 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 B 475 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 B 475 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 B 475 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 B 475 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 B 475 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 B 475 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 B 475 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 B 475 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 B 475 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 B 475 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 B 475 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 B 475 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 B 475 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 B 475 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 B 475 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 B 475 GLN GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 B 475 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 B 475 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 B 475 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 B 475 GLN TYR GLY PHE LEU VAL THR HIS ASN GLU SER ILE SER SEQRES 24 B 475 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 B 475 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 B 475 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 B 475 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 B 475 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 B 475 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 B 475 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 B 475 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 B 475 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 B 475 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 B 475 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 B 475 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 B 475 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 B 475 ARG ASN VAL LEU VAL ARG ASP HET NAD A 501 70 HET SO4 A 502 5 HET 1PS A 503 24 HET 1PS A 504 24 HET AG2 A 505 23 HET ACT A 506 7 HET NAD B 501 70 HET SO4 B 502 5 HET SO4 B 503 5 HET 1PS B 504 48 HET AG2 B 505 23 HET ACT B 506 7 HET ACT B 507 7 HET ACT B 508 7 HET ACT B 509 7 HET 1PS B 510 48 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM AG2 AGMATINE HETNAM ACT ACETATE ION HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM, PPS HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 1PS 4(C8 H11 N O3 S) FORMUL 7 AG2 2(C5 H14 N4) FORMUL 8 ACT 5(C2 H3 O2 1-) FORMUL 19 HOH *1146(H2 O) HELIX 1 AA1 GLY A 20 HIS A 33 1 14 HELIX 2 AA2 ASP A 37 SER A 39 5 3 HELIX 3 AA3 SER A 47 ARG A 57 1 11 HELIX 4 AA4 ASN A 70 THR A 80 1 11 HELIX 5 AA5 SER A 96 ASN A 107 1 12 HELIX 6 AA6 LYS A 129 ARG A 133 5 5 HELIX 7 AA7 SER A 134 LYS A 149 1 16 HELIX 8 AA8 GLY A 164 LEU A 181 1 18 HELIX 9 AA9 THR A 190 LEU A 201 1 12 HELIX 10 AB1 SER A 230 GLN A 240 1 11 HELIX 11 AB2 HIS A 296 LEU A 306 1 11 HELIX 12 AB3 CYS A 328 GLY A 342 1 15 HELIX 13 AB4 ASP A 352 THR A 354 5 3 HELIX 14 AB5 SER A 382 ALA A 390 1 9 HELIX 15 AB6 ASN A 394 ASN A 414 1 21 HELIX 16 AB7 ASP A 423 LEU A 425 5 3 HELIX 17 AB8 ASP A 426 THR A 435 1 10 HELIX 18 AB9 PRO A 436 LEU A 438 5 3 HELIX 19 AC1 GLN A 469 LEU A 474 1 6 HELIX 20 AC2 GLY B 20 HIS B 33 1 14 HELIX 21 AC3 ASP B 37 SER B 39 5 3 HELIX 22 AC4 SER B 47 ARG B 57 1 11 HELIX 23 AC5 ASN B 70 THR B 80 1 11 HELIX 24 AC6 SER B 96 ASN B 107 1 12 HELIX 25 AC7 LYS B 129 ARG B 133 5 5 HELIX 26 AC8 SER B 134 LYS B 149 1 16 HELIX 27 AC9 GLY B 164 GLY B 182 1 19 HELIX 28 AD1 THR B 190 GLY B 202 1 13 HELIX 29 AD2 SER B 230 GLN B 240 1 11 HELIX 30 AD3 HIS B 296 LEU B 306 1 11 HELIX 31 AD4 CYS B 328 GLY B 342 1 15 HELIX 32 AD5 SER B 382 ALA B 390 1 9 HELIX 33 AD6 ASN B 394 ASN B 414 1 21 HELIX 34 AD7 ASP B 423 LEU B 425 5 3 HELIX 35 AD8 ASP B 426 THR B 435 1 10 HELIX 36 AD9 PRO B 436 LEU B 438 5 3 HELIX 37 AE1 GLN B 469 LEU B 474 1 6 SHEET 1 AA1 2 HIS A 8 ARG A 9 0 SHEET 2 AA1 2 PHE A 34 ALA A 35 1 O ALA A 35 N HIS A 8 SHEET 1 AA2 7 ARG A 60 ILE A 62 0 SHEET 2 AA2 7 LEU A 41 ILE A 44 1 N VAL A 43 O ILE A 62 SHEET 3 AA2 7 ILE A 14 ILE A 17 1 N MET A 16 O ILE A 44 SHEET 4 AA2 7 PHE A 87 ASN A 90 1 O VAL A 89 N VAL A 15 SHEET 5 AA2 7 LEU A 110 ILE A 112 1 O LEU A 110 N CYS A 88 SHEET 6 AA2 7 ALA A 155 SER A 157 1 O VAL A 156 N TYR A 111 SHEET 7 AA2 7 ILE A 419 GLU A 421 1 O VAL A 420 N ALA A 155 SHEET 1 AA3 5 THR A 320 HIS A 326 0 SHEET 2 AA3 5 GLY A 205 ASP A 212 1 N ILE A 208 O ALA A 324 SHEET 3 AA3 5 ASP A 361 TYR A 368 -1 O LEU A 366 N HIS A 207 SHEET 4 AA3 5 ALA A 374 SER A 379 -1 O TYR A 375 N LEU A 367 SHEET 5 AA3 5 VAL A 441 THR A 446 -1 O VAL A 444 N TRP A 376 SHEET 1 AA4 2 ARG A 215 ALA A 216 0 SHEET 2 AA4 2 ILE A 356 ASP A 358 -1 O VAL A 357 N ARG A 215 SHEET 1 AA5 2 VAL A 224 ASN A 227 0 SHEET 2 AA5 2 ASP A 347 ILE A 350 1 O ARG A 349 N PHE A 225 SHEET 1 AA6 3 PRO A 241 GLY A 245 0 SHEET 2 AA6 3 GLY A 267 PRO A 273 -1 O LEU A 270 N ALA A 242 SHEET 3 AA6 3 ALA A 257 ARG A 258 -1 N ARG A 258 O TYR A 269 SHEET 1 AA7 2 ARG A 278 THR A 283 0 SHEET 2 AA7 2 MET A 287 PHE A 292 -1 O GLY A 291 N VAL A 279 SHEET 1 AA8 2 VAL A 308 ARG A 309 0 SHEET 2 AA8 2 ALA A 315 TYR A 317 -1 O VAL A 316 N VAL A 308 SHEET 1 AA9 2 HIS B 8 ARG B 9 0 SHEET 2 AA9 2 PHE B 34 ALA B 35 1 O ALA B 35 N HIS B 8 SHEET 1 AB1 7 ARG B 60 ILE B 62 0 SHEET 2 AB1 7 LEU B 41 ILE B 44 1 N VAL B 43 O ARG B 60 SHEET 3 AB1 7 ILE B 14 ILE B 17 1 N MET B 16 O VAL B 42 SHEET 4 AB1 7 PHE B 87 ASN B 90 1 O VAL B 89 N VAL B 15 SHEET 5 AB1 7 LEU B 110 ILE B 112 1 O LEU B 110 N CYS B 88 SHEET 6 AB1 7 ALA B 155 SER B 157 1 O VAL B 156 N TYR B 111 SHEET 7 AB1 7 ILE B 419 GLU B 421 1 O VAL B 420 N SER B 157 SHEET 1 AB2 5 THR B 320 HIS B 326 0 SHEET 2 AB2 5 GLY B 205 ASP B 212 1 N ILE B 208 O ALA B 324 SHEET 3 AB2 5 ASP B 361 TYR B 368 -1 O LEU B 366 N HIS B 207 SHEET 4 AB2 5 ALA B 374 SER B 379 -1 O TYR B 375 N LEU B 367 SHEET 5 AB2 5 VAL B 441 THR B 446 -1 O VAL B 444 N TRP B 376 SHEET 1 AB3 2 ARG B 215 ALA B 216 0 SHEET 2 AB3 2 ILE B 356 ASP B 358 -1 O VAL B 357 N ARG B 215 SHEET 1 AB4 2 VAL B 224 ASN B 227 0 SHEET 2 AB4 2 ASP B 347 ILE B 350 1 O ARG B 349 N PHE B 225 SHEET 1 AB5 3 PRO B 241 GLY B 245 0 SHEET 2 AB5 3 GLY B 267 PRO B 273 -1 O LEU B 270 N ALA B 242 SHEET 3 AB5 3 ALA B 257 ARG B 258 -1 N ARG B 258 O TYR B 269 SHEET 1 AB6 2 ARG B 278 THR B 283 0 SHEET 2 AB6 2 MET B 287 PHE B 292 -1 O GLN B 289 N SER B 281 SHEET 1 AB7 2 VAL B 308 ARG B 309 0 SHEET 2 AB7 2 ALA B 315 TYR B 317 -1 O VAL B 316 N VAL B 308 CISPEP 1 GLY A 82 PRO A 83 0 3.17 CISPEP 2 ASN A 162 PRO A 163 0 5.73 CISPEP 3 ARG A 454 PRO A 455 0 -0.05 CISPEP 4 GLY B 82 PRO B 83 0 -7.79 CISPEP 5 ASN B 162 PRO B 163 0 5.55 CISPEP 6 ARG B 454 PRO B 455 0 -0.02 SITE 1 AC1 31 GLY A 20 SER A 21 ILE A 22 ASP A 45 SITE 2 AC1 31 PRO A 46 SER A 47 ALA A 65 VAL A 66 SITE 3 AC1 31 LEU A 91 SER A 92 VAL A 93 THR A 95 SITE 4 AC1 31 THR A 114 VAL A 115 GLY A 160 ALA A 161 SITE 5 AC1 31 ASN A 162 PRO A 163 TRP A 229 SER A 230 SITE 6 AC1 31 ILE A 350 VAL A 400 HOH A 736 HOH A 739 SITE 7 AC1 31 HOH A 794 HOH A 807 HOH A 816 HOH A 832 SITE 8 AC1 31 HOH A 907 HOH A 965 HOH A1112 SITE 1 AC2 5 CYS A 264 ARG A 309 ALA A 315 ARG A 318 SITE 2 AC2 5 HOH A1146 SITE 1 AC3 5 SER A 47 ASP A 48 GLU A 49 ASP A 347 SITE 2 AC3 5 TRP A 348 SITE 1 AC4 4 MET A 338 GLY A 342 LYS A 343 ARG A 344 SITE 1 AC5 10 ARG A 146 ARG A 191 ASP A 304 PHE A 305 SITE 2 AC5 10 ASP A 424 HOH A 634 HOH A 673 HOH A 764 SITE 3 AC5 10 HOH A 836 HOH A 884 SITE 1 AC6 5 ARG A 215 PRO B 221 PHE B 222 HOH B 760 SITE 2 AC6 5 HOH B 777 SITE 1 AC7 32 PHE B 19 GLY B 20 SER B 21 ILE B 22 SITE 2 AC7 32 ASP B 45 PRO B 46 ALA B 65 VAL B 66 SITE 3 AC7 32 LEU B 91 SER B 92 VAL B 93 THR B 95 SITE 4 AC7 32 THR B 114 VAL B 115 GLY B 160 ALA B 161 SITE 5 AC7 32 ASN B 162 PRO B 163 TRP B 229 SER B 230 SITE 6 AC7 32 ILE B 350 VAL B 400 HOH B 663 HOH B 671 SITE 7 AC7 32 HOH B 688 HOH B 746 HOH B 747 HOH B 751 SITE 8 AC7 32 HOH B 792 HOH B 801 HOH B 986 HOH B1085 SITE 1 AC8 7 CYS B 264 ARG B 309 GLN B 314 ALA B 315 SITE 2 AC8 7 ARG B 318 HOH B1071 HOH B1100 SITE 1 AC9 5 PRO A 221 PHE A 222 HOH A 851 HOH A 874 SITE 2 AC9 5 ARG B 215 SITE 1 AD1 8 LEU A 457 PHE B 124 LEU B 239 MET B 338 SITE 2 AD1 8 GLY B 342 LYS B 343 ARG B 344 HOH B 898 SITE 1 AD2 9 ARG B 146 ARG B 191 ASP B 304 PHE B 305 SITE 2 AD2 9 ASP B 424 HOH B 682 HOH B 769 HOH B 812 SITE 3 AD2 9 HOH B 879 SITE 1 AD3 6 PHE B 225 VAL B 235 ARG B 344 TRP B 348 SITE 2 AD3 6 HOH B 850 HOH B 985 SITE 1 AD4 6 LYS B 171 TRP B 194 LEU B 425 ASP B 426 SITE 2 AD4 6 PHE B 427 HOH B1024 SITE 1 AD5 6 SER B 167 VAL B 170 LYS B 171 ILE B 302 SITE 2 AD5 6 PHE B 305 ASP B 423 SITE 1 AD6 3 TYR B 7 ARG B 429 HOH B1034 SITE 1 AD7 8 GLU B 49 ASP B 347 TRP B 348 ARG B 349 SITE 2 AD7 8 ILE B 350 HOH B 833 HOH B 884 HOH B1065 CRYST1 59.809 109.250 157.640 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006344 0.00000 MASTER 389 0 16 37 50 0 44 6 0 0 0 74 END