HEADER VIRAL PROTEIN 16-JAN-15 4XOR TITLE TAILSPIKE PROTEIN DOUBLE MUTANT D339N/E372Q OF E. COLI BACTERIOPHAGE TITLE 2 HK620 IN COMPLEX WITH PENTASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD BINDING, UNP RESIDUES 114-710; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS BETA HELIX, PROTEIN-CARBOHYDRATE COMPLEX, PECTIN LYASE FOLD, VIRAL KEYWDS 2 PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.GOHLKE,N.K.BROEKER,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 3 29-JUL-20 4XOR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 06-SEP-17 4XOR 1 REMARK SHEET REVDAT 1 27-JAN-16 4XOR 0 JRNL AUTH U.GOHLKE,N.K.BROEKER,S.KUNSTMANN,M.SANTER,U.HEINEMANN, JRNL AUTH 2 R.LIPOWSKI,R.SECKLER,S.BARBIRZ JRNL TITL ENTHALPIC COST OF WATER REMOVAL FROM A HYDROPHOBIC GLUCOSE JRNL TITL 2 BINDING CAVITY ON HK620 TAILSPIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BROEKER,U.GOHLKE,J.J.MUELLER,C.UETRECHT,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER,S.BARBIRZ REMARK 1 TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE REMARK 1 TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS REMARK 1 TITL 3 OLIGOSACCHARIDE AFFINITY. REMARK 1 REF GLYCOBIOLOGY V. 23 59 2013 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 22923442 REMARK 1 DOI 10.1093/GLYCOB/CWS126 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 90151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 323 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 746 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4950 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4383 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6774 ; 1.795 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10039 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 645 ; 7.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;36.337 ;24.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;11.345 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.845 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 749 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5987 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1272 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2512 ; 0.668 ; 0.840 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2513 ; 0.668 ; 0.840 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3179 ; 0.960 ; 1.260 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9557 20.4325 -12.3588 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.1852 REMARK 3 T33: 0.0164 T12: 0.0081 REMARK 3 T13: -0.0093 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.1571 L22: 9.0672 REMARK 3 L33: 3.9289 L12: 1.7492 REMARK 3 L13: -0.6195 L23: -4.3016 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.2855 S13: 0.0502 REMARK 3 S21: -0.6385 S22: 0.0234 S23: 0.0136 REMARK 3 S31: 0.1606 S32: -0.0331 S33: 0.0721 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6562 38.9463 8.6966 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1050 REMARK 3 T33: 0.0205 T12: -0.0075 REMARK 3 T13: -0.0318 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.0870 L22: 0.8752 REMARK 3 L33: 1.5300 L12: -0.1527 REMARK 3 L13: 0.0553 L23: 0.5439 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.0697 S13: 0.0335 REMARK 3 S21: -0.0396 S22: -0.0516 S23: 0.0075 REMARK 3 S31: -0.1673 S32: -0.0217 S33: 0.0920 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 524 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2551 39.2894 38.9038 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: 0.0095 REMARK 3 T33: 0.0139 T12: 0.0078 REMARK 3 T13: -0.0165 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.3701 L22: 0.2061 REMARK 3 L33: 1.0707 L12: -0.0020 REMARK 3 L13: 0.1311 L23: -0.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0422 S13: 0.0606 REMARK 3 S21: -0.0503 S22: -0.0260 S23: 0.0216 REMARK 3 S31: -0.1521 S32: -0.0231 S33: 0.0601 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 525 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2389 50.3822 59.8883 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.1114 REMARK 3 T33: 0.7676 T12: -0.0337 REMARK 3 T13: 0.0893 T23: -0.2431 REMARK 3 L TENSOR REMARK 3 L11: 10.8648 L22: 1.7048 REMARK 3 L33: 9.6092 L12: 2.7061 REMARK 3 L13: 3.1982 L23: -2.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.2277 S12: -0.1834 S13: 1.4587 REMARK 3 S21: 0.2532 S22: -0.0456 S23: 0.1569 REMARK 3 S31: -1.2066 S32: 0.2386 S33: 0.2732 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1081 34.7149 79.4264 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.0303 REMARK 3 T33: 0.0114 T12: -0.0071 REMARK 3 T13: -0.0082 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.0770 L22: 0.0452 REMARK 3 L33: 0.7288 L12: -0.0017 REMARK 3 L13: 0.1029 L23: -0.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0384 S13: 0.0207 REMARK 3 S21: 0.0329 S22: -0.0150 S23: -0.0067 REMARK 3 S31: -0.0846 S32: 0.0278 S33: 0.0172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 4XM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 3.5 M SODIUM FORMATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1,X-Y,Z AND -X+ REMARK 300 Y+1,-X+1,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.25700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 37.12850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.30845 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1809 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1839 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1842 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1114 O HOH A 1542 1.77 REMARK 500 OG SER A 532 O HOH A 1104 1.86 REMARK 500 NE2 GLN A 412 O HOH A 1105 1.97 REMARK 500 OG1 THR A 678 O HOH A 1106 2.05 REMARK 500 O HOH A 1128 O HOH A 1700 2.06 REMARK 500 O HOH A 1110 O HOH A 1130 2.09 REMARK 500 O1 NAG B 1 O HOH A 1107 2.09 REMARK 500 O HOH A 1670 O HOH A 1750 2.12 REMARK 500 O PRO A 159 O HOH A 1108 2.15 REMARK 500 OG SER A 611 O HOH A 1109 2.16 REMARK 500 OG SER A 450 O HOH A 1110 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1419 O HOH A 1680 2655 1.99 REMARK 500 O HOH A 1111 O HOH A 1578 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 229 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 229 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 390 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 466 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 482 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 482 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 215 -61.84 -97.83 REMARK 500 ASN A 303 63.39 64.84 REMARK 500 SER A 319 147.88 -170.79 REMARK 500 ASN A 339 143.22 -176.50 REMARK 500 ASP A 441 66.67 65.10 REMARK 500 THR A 530 -115.26 -105.58 REMARK 500 ASN A 552 -0.90 79.39 REMARK 500 THR A 613 -74.90 -111.86 REMARK 500 ASN A 653 42.44 -106.40 REMARK 500 THR A 678 -168.23 -123.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1014 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 211 O REMARK 620 2 HOH A1397 O 81.5 REMARK 620 3 HOH A1531 O 89.6 170.8 REMARK 620 4 HOH A1689 O 96.2 89.4 94.0 REMARK 620 5 RAM B 4 O2 161.1 104.4 83.2 101.7 REMARK 620 6 RAM B 4 O3 95.4 74.2 104.4 158.2 69.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 483 O REMARK 620 2 THR A 512 OG1 81.3 REMARK 620 3 ASN A 517 OD1 49.4 53.4 REMARK 620 4 HOH A1216 O 45.1 57.9 5.3 REMARK 620 5 HOH A1641 O 51.9 53.1 2.6 7.2 REMARK 620 6 HOH A1704 O 48.4 49.5 4.8 8.4 6.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1013 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 565 O REMARK 620 2 SER A 592 O 84.3 REMARK 620 3 GLN A 594 OE1 76.5 97.7 REMARK 620 4 HOH A1615 O 155.4 87.9 81.4 REMARK 620 5 HOH A1660 O 92.5 173.6 86.9 97.2 REMARK 620 6 HOH A1673 O 107.3 86.5 174.7 95.5 89.2 REMARK 620 N 1 2 3 4 5 DBREF 4XOR A 113 709 UNP Q9AYY6 Q9AYY6_BPHK6 114 710 SEQADV 4XOR ASN A 339 UNP Q9AYY6 ASP 340 ENGINEERED MUTATION SEQADV 4XOR GLN A 372 UNP Q9AYY6 GLU 373 ENGINEERED MUTATION SEQRES 1 A 597 GLN PHE ARG ALA ILE ILE GLU SER PRO GLU GLY ALA GLY SEQRES 2 A 597 HIS VAL GLY TYR GLN TYR ARG ARG ASN THR GLY SER THR SEQRES 3 A 597 MET ARG MET VAL SER ASP VAL LEU ASP GLU ARG VAL SER SEQRES 4 A 597 LEU TRP ASP PHE HIS CYS ASP PRO SER GLY ASN VAL ILE SEQRES 5 A 597 GLN PRO GLY PRO ASN VAL ASP SER ARG GLN TYR LEU GLN SEQRES 6 A 597 ALA ALA ILE ASP TYR VAL SER SER ASN GLY GLY GLY THR SEQRES 7 A 597 ILE THR ILE PRO ALA GLY TYR THR TRP TYR LEU GLY SER SEQRES 8 A 597 TYR GLY VAL GLY GLY ILE ALA GLY HIS SER GLY ILE ILE SEQRES 9 A 597 GLN LEU ARG SER ASN VAL ASN LEU ASN ILE GLU GLY ARG SEQRES 10 A 597 ILE HIS LEU SER PRO PHE PHE ASP LEU LYS PRO PHE GLN SEQRES 11 A 597 VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO ALA SER SER SEQRES 12 A 597 GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY HIS GLY VAL SEQRES 13 A 597 VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SER SER GLN SEQRES 14 A 597 LEU ARG ASN GLY VAL ALA PHE GLY ARG SER TYR ASN CYS SEQRES 15 A 597 SER VAL THR GLY ILE THR PHE GLN ASN GLY ASP VAL THR SEQRES 16 A 597 TRP ALA ILE THR LEU GLY TRP ASN GLY TYR GLY SER ASN SEQRES 17 A 597 CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN LEU VAL ASN SEQRES 18 A 597 SER SER VAL ASN ALA ASN HIS SER THR VAL TYR VAL ASN SEQRES 19 A 597 CYS PRO TYR SER GLY VAL GLU SER CYS TYR PHE SER MET SEQRES 20 A 597 SER SER SER PHE ALA ARG ASN ILE ALA CYS SER VAL GLN SEQRES 21 A 597 LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SER THR VAL SEQRES 22 A 597 ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL MET HIS ALA SEQRES 23 A 597 ALA GLU ALA ALA GLY ALA GLY SER TYR ALA TYR ASN MET SEQRES 24 A 597 GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR GLY GLN PHE SEQRES 25 A 597 VAL ILE LEU GLY SER ASP VAL THR ALA THR VAL SER GLY SEQRES 26 A 597 HIS LEU ASN ASP VAL ILE VAL SER GLY ASN ILE VAL SER SEQRES 27 A 597 ILE GLY GLU ARG ALA ALA PHE SER ALA PRO PHE GLY ALA SEQRES 28 A 597 PHE ILE ASP ILE GLY PRO ASP ASN SER GLY ALA SER ASN SEQRES 29 A 597 VAL GLN ASP ILE GLN ARG VAL LEU VAL THR GLY ASN SER SEQRES 30 A 597 PHE TYR ALA PRO ALA ASN ILE THR ASP SER ALA ALA ILE SEQRES 31 A 597 THR LEU ARG ALA ASN LEU ASN GLY CYS THR PHE ILE ALA SEQRES 32 A 597 ASN ASN PHE ASP CYS ARG TYR MET VAL TYR ASN ALA PRO SEQRES 33 A 597 GLY THR THR SER PRO VAL VAL GLN ASN LEU VAL TRP ASP SEQRES 34 A 597 LYS SER ASN VAL ILE GLY GLY THR HIS ALA ASN GLN ARG SEQRES 35 A 597 ALA GLY GLN ASN LEU PHE ASP MET GLN PHE ALA SER VAL SEQRES 36 A 597 VAL ASN SER THR ILE GLU VAL GLN LEU SER CYS GLU ASP SEQRES 37 A 597 LEU SER MET PHE SER CYS ILE LEU PHE PRO ALA SER CYS SEQRES 38 A 597 GLN LEU SER TYR SER LYS ILE THR VAL ASP SER ALA TRP SEQRES 39 A 597 THR LYS SER MET SER ASN THR ALA VAL PHE GLU GLY ASN SEQRES 40 A 597 GLN GLN ALA GLY ALA ASN VAL TYR VAL SER TYR PRO ALA SEQRES 41 A 597 THR VAL ASN LEU THR SER TYR ASN THR GLN GLY ALA VAL SEQRES 42 A 597 PRO PHE PHE SER THR ASP THR ASN TYR ALA TRP VAL THR SEQRES 43 A 597 SER ALA TYR SER LEU SER ILE ASN GLU ASN LEU ASP PHE SEQRES 44 A 597 SER PRO PRO ALA THR TYR THR ASN LYS ALA ASN GLY GLN SEQRES 45 A 597 LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY GLY VAL ARG SEQRES 46 A 597 SER VAL SER VAL ARG LEU MET LEU GLN ARG GLN VAL HET NDG B 1 15 HET NAG B 1 15 HET GLA B 2 11 HET GLC B 3 11 HET RAM B 4 10 HET NAG B 5 14 HET TRS A1007 8 HET FMT A1008 3 HET FMT A1009 3 HET FMT A1010 3 HET FMT A1011 3 HET NA A1012 1 HET NA A1013 1 HET NA A1014 1 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 NDG C8 H15 N O6 FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 GLA C6 H12 O6 FORMUL 2 GLC C6 H12 O6 FORMUL 2 RAM C6 H12 O5 FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 FMT 4(C H2 O2) FORMUL 8 NA 3(NA 1+) FORMUL 11 HOH *746(H2 O) HELIX 1 AA1 GLN A 113 SER A 120 1 8 HELIX 2 AA2 GLU A 122 HIS A 126 5 5 HELIX 3 AA3 GLN A 130 ASN A 134 5 5 HELIX 4 AA4 VAL A 142 ASP A 147 1 6 HELIX 5 AA5 TRP A 153 PHE A 155 5 3 HELIX 6 AA6 SER A 172 ASN A 186 1 15 HELIX 7 AA7 VAL A 206 HIS A 212 5 7 HELIX 8 AA8 PRO A 234 ASP A 237 5 4 HELIX 9 AA9 ASP A 251 SER A 255 5 5 HELIX 10 AB1 PHE A 363 ILE A 367 1 5 HELIX 11 AB2 HIS A 397 ALA A 401 5 5 HELIX 12 AB3 ASN A 619 GLY A 623 5 5 SHEET 1 A 2 GLY A 128 GLN A 130 0 SHEET 2 A 2 MET A 139 MET A 141 -1 SHEET 1 B 2 GLY A 189 ILE A 193 0 SHEET 2 B 2 VAL A 222 ILE A 226 1 SHEET 1 C11 THR A 198 LEU A 201 0 SHEET 2 C11 ARG A 229 LEU A 232 1 SHEET 3 C11 VAL A 268 ASP A 270 1 SHEET 4 C11 THR A 300 GLN A 302 1 SHEET 5 C11 ARG A 327 ILE A 329 1 SHEET 6 C11 TYR A 356 SER A 358 1 SHEET 7 C11 THR A 384 TYR A 388 1 SHEET 8 C11 ILE A 417 ILE A 420 1 SHEET 9 C11 ILE A 448 ILE A 451 1 SHEET 10 C11 SER A 489 ALA A 492 1 SHEET 11 C11 ASN A 517 ASP A 519 1 SHEET 1 D10 CYS A 261 TYR A 264 0 SHEET 2 D10 CYS A 294 THR A 297 1 SHEET 3 D10 CYS A 321 ARG A 324 1 SHEET 4 D10 SER A 350 GLU A 353 1 SHEET 5 D10 THR A 378 ARG A 381 1 SHEET 6 D10 MET A 411 GLU A 414 1 SHEET 7 D10 VAL A 442 SER A 445 1 SHEET 8 D10 VAL A 483 THR A 486 1 SHEET 9 D10 CYS A 511 ILE A 514 1 SHEET 10 D10 LEU A 538 TRP A 540 1 SHEET 1 E 7 ILE A 310 LEU A 312 0 SHEET 2 E 7 VAL A 343 VAL A 345 1 SHEET 3 E 7 VAL A 371 LEU A 373 1 SHEET 4 E 7 ALA A 392 MET A 396 1 SHEET 5 E 7 VAL A 425 SER A 429 1 SHEET 6 E 7 ILE A 465 ILE A 467 1 SHEET 7 E 7 ILE A 502 LEU A 504 1 SHEET 1 F 3 VAL A 534 GLN A 536 0 SHEET 2 F 3 SER A 566 VAL A 568 1 SHEET 3 F 3 GLN A 594 SER A 596 1 SHEET 1 G 3 PHE A 560 MET A 562 0 SHEET 2 G 3 ILE A 587 PHE A 589 1 SHEET 3 G 3 ALA A 614 PHE A 616 1 SHEET 1 H 5 THR A 571 VAL A 574 0 SHEET 2 H 5 SER A 598 VAL A 602 1 SHEET 3 H 5 VAL A 626 THR A 637 1 SHEET 4 H 5 SER A 698 ARG A 707 -1 SHEET 5 H 5 SER A 659 SER A 662 -1 SHEET 1 I 3 LEU A 636 SER A 638 0 SHEET 2 I 3 GLY A 643 SER A 649 -1 SHEET 3 I 3 VAL A 686 ASN A 691 -1 LINK O3 ANDG B 1 C1 GLA B 2 1555 1555 1.43 LINK O3 BNAG B 1 C1 GLA B 2 1555 1555 1.43 LINK O4 GLA B 2 C1 GLC B 3 1555 1555 1.43 LINK O3 GLA B 2 C1 NAG B 5 1555 1555 1.42 LINK O6 GLC B 3 C1 RAM B 4 1555 1555 1.45 LINK O GLY A 211 NA NA A1014 1555 1555 2.43 LINK O VAL A 483 NA NA A1012 1555 2655 2.87 LINK OG1 THR A 512 NA NA A1012 1555 2655 2.55 LINK OD1 ASN A 517 NA NA A1012 1555 1555 2.19 LINK O ALA A 565 NA NA A1013 1555 1555 2.52 LINK O SER A 592 NA NA A1013 1555 1555 2.34 LINK OE1 GLN A 594 NA NA A1013 1555 1555 2.37 LINK NA NA A1012 O HOH A1216 1555 1555 2.31 LINK NA NA A1012 O HOH A1641 1555 3665 2.36 LINK NA NA A1012 O HOH A1704 1555 1555 2.60 LINK NA NA A1013 O HOH A1615 1555 1555 2.26 LINK NA NA A1013 O HOH A1660 1555 1555 2.30 LINK NA NA A1013 O HOH A1673 1555 1555 2.54 LINK NA NA A1014 O HOH A1397 1555 1555 2.20 LINK NA NA A1014 O HOH A1531 1555 1555 1.99 LINK NA NA A1014 O HOH A1689 1555 1555 2.23 LINK NA NA A1014 O2 RAM B 4 1555 1555 2.47 LINK NA NA A1014 O3 RAM B 4 1555 1555 2.40 CRYST1 74.257 74.257 174.512 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013467 0.007775 0.000000 0.00000 SCALE2 0.000000 0.015550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005730 0.00000 MASTER 494 0 14 12 46 0 0 6 0 0 0 46 END