HEADER VIRAL PROTEIN 13-JAN-15 4XLH TITLE TAILSPIKE PROTEIN DOUBLE MUTANT D339A/E372A OF E. COLI BACTERIOPHAGE TITLE 2 HK620 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD BINDING, RESIDUES 112-710; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS BETA HELIX, PROTEIN-CARBOHYDRATE COMPLEX, PECTIN LYASE FOLD, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.GOHLKE,N.K.BROEKER,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 2 06-SEP-17 4XLH 1 REMARK LINK SITE ATOM REVDAT 1 20-JAN-16 4XLH 0 JRNL AUTH U.GOHLKE,N.K.BROEKER,S.KUNSTMANN,M.SANTER,U.HEINEMANN, JRNL AUTH 2 R.LIPOWSKI,R.SECKLER,S.BARBIRZ JRNL TITL ENTHALPIC COST OF WATER REMOVAL FROM A HYDROPHOBIC GLUCOSE JRNL TITL 2 BINDING CAVITY ON HK620 TAILSPIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BROEKER,U.GOHLKE,J.J.MUELLER,C.UETRECHT,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER,S.BARBIRZ REMARK 1 TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE REMARK 1 TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS REMARK 1 TITL 3 OLIGOSACCHARIDE AFFINITY. REMARK 1 REF GLYCOBIOLOGY V. 23 59 2013 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 22923442 REMARK 1 DOI 10.1093/GLYCOB/CWS126 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.075 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4722 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4218 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6438 ; 1.674 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9640 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 7.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;36.441 ;24.311 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;12.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5689 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1220 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2431 ; 0.870 ; 1.326 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2432 ; 0.876 ; 1.327 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3048 ; 1.285 ; 1.987 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4322 19.4174 -10.7859 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.2283 REMARK 3 T33: 0.0270 T12: 0.0222 REMARK 3 T13: -0.0142 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.0078 L22: 9.1921 REMARK 3 L33: 2.5535 L12: 2.4523 REMARK 3 L13: -1.1060 L23: -3.1191 REMARK 3 S TENSOR REMARK 3 S11: -0.2152 S12: 0.4885 S13: 0.1304 REMARK 3 S21: -0.7703 S22: 0.0956 S23: 0.0374 REMARK 3 S31: 0.2581 S32: -0.1943 S33: 0.1196 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4794 40.0623 26.2975 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0696 REMARK 3 T33: 0.0514 T12: 0.0234 REMARK 3 T13: -0.0514 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.2725 L22: 0.1990 REMARK 3 L33: 2.2168 L12: 0.0435 REMARK 3 L13: 0.1484 L23: 0.0234 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: 0.0977 S13: 0.0927 REMARK 3 S21: -0.1090 S22: -0.0565 S23: 0.0481 REMARK 3 S31: -0.3484 S32: -0.0718 S33: 0.1383 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 465 A 524 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3609 39.3092 53.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0031 REMARK 3 T33: 0.0188 T12: 0.0134 REMARK 3 T13: -0.0199 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.5609 L22: 0.9711 REMARK 3 L33: 0.9319 L12: 0.3881 REMARK 3 L13: -0.1141 L23: 0.2148 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.0002 S13: 0.1859 REMARK 3 S21: -0.0323 S22: -0.0213 S23: 0.0160 REMARK 3 S31: -0.2362 S32: -0.0533 S33: 0.0554 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 525 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8959 46.6724 60.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.0238 REMARK 3 T33: 0.1021 T12: 0.0061 REMARK 3 T13: -0.0095 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 16.4253 L22: 8.9440 REMARK 3 L33: 6.6188 L12: 3.2248 REMARK 3 L13: -2.9744 L23: -2.3692 REMARK 3 S TENSOR REMARK 3 S11: 0.1919 S12: -0.3703 S13: 1.2479 REMARK 3 S21: 0.2729 S22: -0.1028 S23: 0.0876 REMARK 3 S31: -0.9989 S32: 0.0509 S33: -0.0891 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 538 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3821 34.3079 80.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0499 REMARK 3 T33: 0.0699 T12: -0.0081 REMARK 3 T13: -0.0130 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.1603 L22: 0.0473 REMARK 3 L33: 0.9847 L12: 0.0021 REMARK 3 L13: 0.1635 L23: -0.1805 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.0717 S13: 0.0313 REMARK 3 S21: 0.0373 S22: -0.0249 S23: -0.0149 REMARK 3 S31: -0.1245 S32: 0.0419 S33: 0.0309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 43.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4XM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 3.5 M SODIUM FORMATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1,X-Y,Z AND -X+ REMARK 300 Y+1,-X+1,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 73.97500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 36.98750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.06423 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1341 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 942 O HOH A 942 2655 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 505 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 505 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 303 65.03 65.35 REMARK 500 ASN A 333 -0.86 -144.21 REMARK 500 ASP A 441 71.31 64.43 REMARK 500 MET A 523 -64.29 -93.28 REMARK 500 THR A 530 -113.53 -80.64 REMARK 500 THR A 613 -67.29 -108.13 REMARK 500 THR A 678 -162.70 -122.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 807 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 565 O REMARK 620 2 SER A 592 O 83.0 REMARK 620 3 GLN A 594 OE1 80.9 84.5 REMARK 620 4 HOH A1297 O 96.1 176.6 98.6 REMARK 620 5 HOH A1274 O 106.0 83.5 165.3 93.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 807 DBREF 4XLH A 111 709 UNP Q9AYY6 Q9AYY6_BPHK6 112 710 SEQADV 4XLH ALA A 339 UNP Q9AYY6 ASP 340 ENGINEERED MUTATION SEQADV 4XLH ALA A 372 UNP Q9AYY6 GLU 373 ENGINEERED MUTATION SEQRES 1 A 599 PRO ASP GLN PHE ARG ALA ILE ILE GLU SER PRO GLU GLY SEQRES 2 A 599 ALA GLY HIS VAL GLY TYR GLN TYR ARG ARG ASN THR GLY SEQRES 3 A 599 SER THR MET ARG MET VAL SER ASP VAL LEU ASP GLU ARG SEQRES 4 A 599 VAL SER LEU TRP ASP PHE HIS CYS ASP PRO SER GLY ASN SEQRES 5 A 599 VAL ILE GLN PRO GLY PRO ASN VAL ASP SER ARG GLN TYR SEQRES 6 A 599 LEU GLN ALA ALA ILE ASP TYR VAL SER SER ASN GLY GLY SEQRES 7 A 599 GLY THR ILE THR ILE PRO ALA GLY TYR THR TRP TYR LEU SEQRES 8 A 599 GLY SER TYR GLY VAL GLY GLY ILE ALA GLY HIS SER GLY SEQRES 9 A 599 ILE ILE GLN LEU ARG SER ASN VAL ASN LEU ASN ILE GLU SEQRES 10 A 599 GLY ARG ILE HIS LEU SER PRO PHE PHE ASP LEU LYS PRO SEQRES 11 A 599 PHE GLN VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO ALA SEQRES 12 A 599 SER SER GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY HIS SEQRES 13 A 599 GLY VAL VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SER SEQRES 14 A 599 SER GLN LEU ARG ASN GLY VAL ALA PHE GLY ARG SER TYR SEQRES 15 A 599 ASN CYS SER VAL THR GLY ILE THR PHE GLN ASN GLY ASP SEQRES 16 A 599 VAL THR TRP ALA ILE THR LEU GLY TRP ASN GLY TYR GLY SEQRES 17 A 599 SER ASN CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN LEU SEQRES 18 A 599 VAL ASN SER SER VAL ASN ALA ALA HIS SER THR VAL TYR SEQRES 19 A 599 VAL ASN CYS PRO TYR SER GLY VAL GLU SER CYS TYR PHE SEQRES 20 A 599 SER MET SER SER SER PHE ALA ARG ASN ILE ALA CYS SER SEQRES 21 A 599 VAL ALA LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SER SEQRES 22 A 599 THR VAL ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL MET SEQRES 23 A 599 HIS ALA ALA GLU ALA ALA GLY ALA GLY SER TYR ALA TYR SEQRES 24 A 599 ASN MET GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR GLY SEQRES 25 A 599 GLN PHE VAL ILE LEU GLY SER ASP VAL THR ALA THR VAL SEQRES 26 A 599 SER GLY HIS LEU ASN ASP VAL ILE VAL SER GLY ASN ILE SEQRES 27 A 599 VAL SER ILE GLY GLU ARG ALA ALA PHE SER ALA PRO PHE SEQRES 28 A 599 GLY ALA PHE ILE ASP ILE GLY PRO ASP ASN SER GLY ALA SEQRES 29 A 599 SER ASN VAL GLN ASP ILE GLN ARG VAL LEU VAL THR GLY SEQRES 30 A 599 ASN SER PHE TYR ALA PRO ALA ASN ILE THR ASP SER ALA SEQRES 31 A 599 ALA ILE THR LEU ARG ALA ASN LEU ASN GLY CYS THR PHE SEQRES 32 A 599 ILE ALA ASN ASN PHE ASP CYS ARG TYR MET VAL TYR ASN SEQRES 33 A 599 ALA PRO GLY THR THR SER PRO VAL VAL GLN ASN LEU VAL SEQRES 34 A 599 TRP ASP LYS SER ASN VAL ILE GLY GLY THR HIS ALA ASN SEQRES 35 A 599 GLN ARG ALA GLY GLN ASN LEU PHE ASP MET GLN PHE ALA SEQRES 36 A 599 SER VAL VAL ASN SER THR ILE GLU VAL GLN LEU SER CYS SEQRES 37 A 599 GLU ASP LEU SER MET PHE SER CYS ILE LEU PHE PRO ALA SEQRES 38 A 599 SER CYS GLN LEU SER TYR SER LYS ILE THR VAL ASP SER SEQRES 39 A 599 ALA TRP THR LYS SER MET SER ASN THR ALA VAL PHE GLU SEQRES 40 A 599 GLY ASN GLN GLN ALA GLY ALA ASN VAL TYR VAL SER TYR SEQRES 41 A 599 PRO ALA THR VAL ASN LEU THR SER TYR ASN THR GLN GLY SEQRES 42 A 599 ALA VAL PRO PHE PHE SER THR ASP THR ASN TYR ALA TRP SEQRES 43 A 599 VAL THR SER ALA TYR SER LEU SER ILE ASN GLU ASN LEU SEQRES 44 A 599 ASP PHE SER PRO PRO ALA THR TYR THR ASN LYS ALA ASN SEQRES 45 A 599 GLY GLN LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY GLY SEQRES 46 A 599 VAL ARG SER VAL SER VAL ARG LEU MET LEU GLN ARG GLN SEQRES 47 A 599 VAL HET TRS A 801 8 HET FMT A 802 3 HET FMT A 803 3 HET FMT A 804 3 HET FMT A 805 3 HET FMT A 806 3 HET NA A 807 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 FMT 5(C H2 O2) FORMUL 8 NA NA 1+ FORMUL 9 HOH *449(H2 O) HELIX 1 AA1 PRO A 111 SER A 120 1 10 HELIX 2 AA2 GLU A 122 HIS A 126 5 5 HELIX 3 AA3 GLN A 130 ASN A 134 5 5 HELIX 4 AA4 VAL A 142 ASP A 147 1 6 HELIX 5 AA5 TRP A 153 PHE A 155 5 3 HELIX 6 AA6 SER A 172 ASN A 186 1 15 HELIX 7 AA7 GLY A 207 HIS A 212 5 6 HELIX 8 AA8 PRO A 234 ASP A 237 5 4 HELIX 9 AA9 ASP A 251 SER A 255 5 5 HELIX 10 AB1 PHE A 363 ILE A 367 1 5 HELIX 11 AB2 HIS A 397 ALA A 401 5 5 HELIX 12 AB3 ASN A 619 GLY A 623 5 5 SHEET 1 A 2 GLY A 128 GLN A 130 0 SHEET 2 A 2 MET A 139 MET A 141 -1 SHEET 1 B 2 GLY A 189 ILE A 193 0 SHEET 2 B 2 VAL A 222 ILE A 226 1 SHEET 1 C11 THR A 198 LEU A 201 0 SHEET 2 C11 ARG A 229 LEU A 232 1 SHEET 3 C11 VAL A 268 ASP A 270 1 SHEET 4 C11 THR A 300 GLN A 302 1 SHEET 5 C11 ARG A 327 ILE A 329 1 SHEET 6 C11 TYR A 356 SER A 358 1 SHEET 7 C11 THR A 384 TYR A 388 1 SHEET 8 C11 ILE A 417 ILE A 420 1 SHEET 9 C11 ILE A 448 ILE A 451 1 SHEET 10 C11 SER A 489 ALA A 492 1 SHEET 11 C11 ASN A 517 ASP A 519 1 SHEET 1 D10 CYS A 261 TYR A 264 0 SHEET 2 D10 CYS A 294 THR A 297 1 SHEET 3 D10 CYS A 321 ARG A 324 1 SHEET 4 D10 SER A 350 GLU A 353 1 SHEET 5 D10 THR A 378 ARG A 381 1 SHEET 6 D10 MET A 411 GLU A 414 1 SHEET 7 D10 VAL A 442 SER A 445 1 SHEET 8 D10 VAL A 483 THR A 486 1 SHEET 9 D10 CYS A 511 ILE A 514 1 SHEET 10 D10 LEU A 538 TRP A 540 1 SHEET 1 E 7 ILE A 310 LEU A 312 0 SHEET 2 E 7 VAL A 343 VAL A 345 1 SHEET 3 E 7 VAL A 371 LEU A 373 1 SHEET 4 E 7 ALA A 392 MET A 396 1 SHEET 5 E 7 VAL A 425 SER A 429 1 SHEET 6 E 7 ILE A 465 ILE A 467 1 SHEET 7 E 7 ILE A 502 LEU A 504 1 SHEET 1 F 3 VAL A 534 GLN A 536 0 SHEET 2 F 3 SER A 566 VAL A 568 1 SHEET 3 F 3 GLN A 594 SER A 596 1 SHEET 1 G 5 THR A 571 VAL A 574 0 SHEET 2 G 5 SER A 598 VAL A 602 1 SHEET 3 G 5 VAL A 626 THR A 637 1 SHEET 4 G 5 SER A 698 ARG A 707 -1 SHEET 5 G 5 SER A 659 SER A 662 -1 SHEET 1 H 2 ILE A 587 PHE A 589 0 SHEET 2 H 2 ALA A 614 PHE A 616 1 SHEET 1 I 3 LEU A 636 SER A 638 0 SHEET 2 I 3 GLY A 643 SER A 649 -1 SHEET 3 I 3 VAL A 686 ASN A 691 -1 LINK O ALA A 565 NA NA A 807 1555 1555 2.57 LINK O SER A 592 NA NA A 807 1555 1555 2.44 LINK OE1 GLN A 594 NA NA A 807 1555 1555 2.24 LINK NA NA A 807 O HOH A1297 1555 1555 2.51 LINK NA NA A 807 O HOH A1274 1555 1555 2.50 SITE 1 AC1 11 VAL A 568 ASN A 569 TYR A 597 ASP A 670 SITE 2 AC1 11 ILE A 693 ARG A 697 HOH A 950 HOH A 979 SITE 3 AC1 11 HOH A 991 HOH A1028 HOH A1045 SITE 1 AC2 6 TYR A 597 ASN A 625 LEU A 669 ASP A 670 SITE 2 AC2 6 HOH A 901 HOH A 984 SITE 1 AC3 5 VAL A 634 ASN A 635 THR A 650 ASP A 651 SITE 2 AC3 5 TYR A 654 SITE 1 AC4 3 ARG A 140 ASP A 144 HOH A1038 SITE 1 AC5 6 ASP A 541 LYS A 542 ASN A 544 GLN A 575 SITE 2 AC5 6 HOH A 990 HOH A1133 SITE 1 AC6 7 GLY A 623 ALA A 624 GLU A 667 ALA A 681 SITE 2 AC6 7 HOH A1022 HOH A1210 HOH A1140 SITE 1 AC7 5 ALA A 565 SER A 592 GLN A 594 HOH A1274 SITE 2 AC7 5 HOH A1297 CRYST1 73.975 73.975 174.328 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013518 0.007805 0.000000 0.00000 SCALE2 0.000000 0.015609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005736 0.00000 MASTER 469 0 7 12 45 0 14 6 0 0 0 47 END