HEADER TRANSFERASE/TRANSFERASE INHIBITOR 08-JAN-15 4XJ0 TITLE CRYSTAL STRUCTURE OF ERK2 IN COMPLEX WITH AN INHIBITOR 14K COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 12-360; COMPND 5 SYNONYM: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, COMPND 6 MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, COMPND 7 MAPK 2; COMPND 8 EC: 2.7.11.24; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.YIN,W.WANG REVDAT 1 16-SEP-15 4XJ0 0 JRNL AUTH L.REN,J.GRINA,D.MORENO,J.F.BLAKE,J.J.GAUDINO,R.GARREY, JRNL AUTH 2 A.T.METCALF,M.BURKARD,M.MARTINSON,K.RASOR,H.CHEN,B.DEAN, JRNL AUTH 3 S.E.GOULD,P.PACHECO,S.SHAHIDI-LATHAM,J.YIN,K.WEST,W.WANG, JRNL AUTH 4 J.G.MOFFAT,J.B.SCHWARZ JRNL TITL DISCOVERY OF HIGHLY POTENT, SELECTIVE, AND EFFICACIOUS SMALL JRNL TITL 2 MOLECULE INHIBITORS OF ERK1/2. JRNL REF J.MED.CHEM. V. 58 1976 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25603482 JRNL DOI 10.1021/JM501921K REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 31184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2821 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2345 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2695 REMARK 3 BIN R VALUE (WORKING SET) : 0.2315 REMARK 3 BIN FREE R VALUE : 0.3007 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.47 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.04400 REMARK 3 B22 (A**2) : -8.04400 REMARK 3 B33 (A**2) : 16.08800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.431 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.481 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.271 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.456 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.271 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5805 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7863 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2026 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 151 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 821 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5805 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 739 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6641 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.20 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.9941 -30.9425 -24.3001 REMARK 3 T TENSOR REMARK 3 T11: 0.3962 T22: 0.3403 REMARK 3 T33: 0.2865 T12: 0.0444 REMARK 3 T13: -0.0074 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.9821 L22: 1.3331 REMARK 3 L33: 2.2446 L12: -1.3425 REMARK 3 L13: 0.5735 L23: -0.7289 REMARK 3 S TENSOR REMARK 3 S11: -0.2338 S12: -0.2535 S13: -0.0650 REMARK 3 S21: 0.1201 S22: 0.2093 S23: 0.0086 REMARK 3 S31: -0.1382 S32: 0.0040 S33: 0.0245 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -7.0273 -48.7001 -59.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.3363 T22: 0.3721 REMARK 3 T33: 0.2077 T12: -0.0963 REMARK 3 T13: -0.0293 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.9707 L22: 2.3175 REMARK 3 L33: 7.7992 L12: -0.1505 REMARK 3 L13: 0.3349 L23: 1.5575 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: -0.1187 S13: 0.0141 REMARK 3 S21: 0.2784 S22: 0.0461 S23: -0.1507 REMARK 3 S31: 0.6633 S32: -0.4720 S33: 0.0270 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ERK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.2 M PROLINE, AND 0.1 M REMARK 280 HEPES PH7.5, IN A 24-WELL LINBRO PLATES, EVAPORATION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.24650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.59550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.62325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.59550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 205.86975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.59550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.62325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.59550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.59550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 205.86975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 137.24650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 258 REMARK 465 ASP A 332 REMARK 465 MET A 333 REMARK 465 LEU B 252 REMARK 465 ASN B 253 REMARK 465 CYS B 254 REMARK 465 ILE B 255 REMARK 465 ILE B 256 REMARK 465 ASN B 257 REMARK 465 LEU B 258 REMARK 465 TYR B 358 REMARK 465 ARG B 359 REMARK 465 SER B 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 46 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 79.10 32.36 REMARK 500 ASN A 27 62.87 37.78 REMARK 500 TYR A 36 23.94 -140.86 REMARK 500 PHE A 59 -8.98 -56.22 REMARK 500 ARG A 148 -2.58 75.23 REMARK 500 ASP A 149 42.61 -142.46 REMARK 500 ASN A 158 -54.51 -120.03 REMARK 500 ASP A 167 84.81 60.25 REMARK 500 PHE A 168 30.32 -99.58 REMARK 500 ASP A 177 45.30 -102.68 REMARK 500 HIS A 180 20.34 -70.68 REMARK 500 THR A 181 -89.23 41.39 REMARK 500 VAL A 188 -131.27 -96.68 REMARK 500 SER A 202 64.45 26.97 REMARK 500 ASN A 262 -70.65 -53.48 REMARK 500 LEU A 294 47.74 -97.38 REMARK 500 ASP A 318 89.30 -154.44 REMARK 500 ARG B 15 -102.14 -158.68 REMARK 500 GLN B 17 -114.83 -139.09 REMARK 500 ASN B 45 44.88 -76.54 REMARK 500 VAL B 46 -55.64 -151.09 REMARK 500 ASP B 149 42.40 -147.75 REMARK 500 ASP B 167 85.46 57.28 REMARK 500 ASP B 179 77.97 -115.59 REMARK 500 HIS B 180 -121.69 -123.32 REMARK 500 THR B 181 175.19 -50.79 REMARK 500 VAL B 188 -86.54 -89.81 REMARK 500 ILE B 243 -61.93 -106.16 REMARK 500 SER B 248 -88.11 -58.65 REMARK 500 GLU B 250 88.73 -64.43 REMARK 500 TYR B 263 -12.90 64.95 REMARK 500 LEU B 294 57.95 -100.47 REMARK 500 ASP B 318 90.33 -163.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 41B A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 41B B 401 DBREF 4XJ0 A 12 360 UNP P28482 MK01_HUMAN 12 360 DBREF 4XJ0 B 12 360 UNP P28482 MK01_HUMAN 12 360 SEQRES 1 A 349 GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY PRO ARG SEQRES 2 A 349 TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA TYR GLY SEQRES 3 A 349 MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS VAL ARG SEQRES 4 A 349 VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS GLN THR SEQRES 5 A 349 TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE LEU LEU SEQRES 6 A 349 ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN ASP ILE SEQRES 7 A 349 ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP VAL TYR SEQRES 8 A 349 ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR LYS LEU SEQRES 9 A 349 LEU LYS THR GLN HIS LEU SER ASN ASP NEP ILE CYS TYR SEQRES 10 A 349 PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE HIS SEQRES 11 A 349 SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SER ASN SEQRES 12 A 349 LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE CYS ASP SEQRES 13 A 349 PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS ASP HIS SEQRES 14 A 349 THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG TRP TYR SEQRES 15 A 349 ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY TYR THR SEQRES 16 A 349 LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE LEU ALA SEQRES 17 A 349 GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY LYS HIS SEQRES 18 A 349 TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE LEU GLY SEQRES 19 A 349 SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE ASN LEU SEQRES 20 A 349 LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS LYS ASN SEQRES 21 A 349 LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA ASP SER SEQRES 22 A 349 LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR PHE ASN SEQRES 23 A 349 PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU ALA HIS SEQRES 24 A 349 PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP GLU PRO SEQRES 25 A 349 ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU LEU ASP SEQRES 26 A 349 ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE PHE GLU SEQRES 27 A 349 GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER SEQRES 1 B 349 GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY PRO ARG SEQRES 2 B 349 TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA TYR GLY SEQRES 3 B 349 MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS VAL ARG SEQRES 4 B 349 VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS GLN THR SEQRES 5 B 349 TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE LEU LEU SEQRES 6 B 349 ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN ASP ILE SEQRES 7 B 349 ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP VAL TYR SEQRES 8 B 349 ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR LYS LEU SEQRES 9 B 349 LEU LYS THR GLN HIS LEU SER ASN ASP NEP ILE CYS TYR SEQRES 10 B 349 PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE HIS SEQRES 11 B 349 SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SER ASN SEQRES 12 B 349 LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE CYS ASP SEQRES 13 B 349 PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS ASP HIS SEQRES 14 B 349 THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG TRP TYR SEQRES 15 B 349 ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY TYR THR SEQRES 16 B 349 LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE LEU ALA SEQRES 17 B 349 GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY LYS HIS SEQRES 18 B 349 TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE LEU GLY SEQRES 19 B 349 SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE ASN LEU SEQRES 20 B 349 LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS LYS ASN SEQRES 21 B 349 LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA ASP SER SEQRES 22 B 349 LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR PHE ASN SEQRES 23 B 349 PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU ALA HIS SEQRES 24 B 349 PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP GLU PRO SEQRES 25 B 349 ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU LEU ASP SEQRES 26 B 349 ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE PHE GLU SEQRES 27 B 349 GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER MODRES 4XJ0 NEP A 125 HIS MODIFIED RESIDUE MODRES 4XJ0 NEP B 125 HIS MODIFIED RESIDUE HET NEP A 125 14 HET NEP B 125 14 HET 41B A 401 31 HET 41B B 401 31 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM 41B 1-[(1S)-1-(4-CHLORO-3-FLUOROPHENYL)-2-HYDROXYETHYL]-4- HETNAM 2 41B [2-(TETRAHYDRO-2H-PYRAN-4-YLAMINO)PYRIMIDIN-4- HETNAM 3 41B YL]PYRIDIN-2(1H)-ONE FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 3 41B 2(C22 H22 CL F N4 O3) FORMUL 5 HOH *120(H2 O) HELIX 1 AA1 HIS A 61 PHE A 78 1 18 HELIX 2 AA2 LEU A 112 GLN A 119 1 8 HELIX 3 AA3 SER A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 THR A 190 ARG A 194 5 5 HELIX 6 AA6 ALA A 195 SER A 202 1 8 HELIX 7 AA7 LYS A 207 ASN A 224 1 18 HELIX 8 AA8 HIS A 232 GLY A 245 1 14 HELIX 9 AA9 SER A 248 CYS A 254 1 7 HELIX 10 AB1 ALA A 260 SER A 266 1 7 HELIX 11 AB2 PRO A 274 PHE A 279 1 6 HELIX 12 AB3 ASP A 283 LEU A 294 1 12 HELIX 13 AB4 ASN A 297 ARG A 301 5 5 HELIX 14 AB5 GLU A 303 ALA A 309 1 7 HELIX 15 AB6 HIS A 310 GLU A 314 5 5 HELIX 16 AB7 ASP A 318 GLU A 322 5 5 HELIX 17 AB8 PRO A 339 THR A 351 1 13 HELIX 18 AB9 ALA A 352 GLN A 355 5 4 HELIX 19 AC1 HIS B 61 PHE B 78 1 18 HELIX 20 AC2 LEU B 112 GLN B 119 1 8 HELIX 21 AC3 SER B 122 ALA B 143 1 22 HELIX 22 AC4 LYS B 151 SER B 153 5 3 HELIX 23 AC5 THR B 190 ARG B 194 5 5 HELIX 24 AC6 ALA B 195 SER B 202 1 8 HELIX 25 AC7 LYS B 207 ASN B 224 1 18 HELIX 26 AC8 HIS B 232 GLY B 245 1 14 HELIX 27 AC9 PRO B 274 PHE B 279 1 6 HELIX 28 AD1 ASP B 283 LEU B 294 1 12 HELIX 29 AD2 GLU B 303 ALA B 309 1 7 HELIX 30 AD3 HIS B 310 GLU B 314 5 5 HELIX 31 AD4 ASP B 318 GLU B 322 5 5 HELIX 32 AD5 GLU B 334 LEU B 338 5 5 HELIX 33 AD6 PRO B 339 THR B 351 1 13 HELIX 34 AD7 ALA B 352 GLN B 355 5 4 SHEET 1 AA1 2 MET A 13 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14 SHEET 1 AA2 5 TYR A 25 GLU A 33 0 SHEET 2 AA2 5 GLY A 37 ASP A 44 -1 O VAL A 39 N GLY A 32 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O VAL A 51 N ALA A 42 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O VAL A 101 N ILE A 56 SHEET 5 AA2 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 THR A 159 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 ASP A 162 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 SHEET 1 AA5 5 TYR B 25 GLU B 33 0 SHEET 2 AA5 5 GLY B 37 ASP B 44 -1 O TYR B 43 N THR B 26 SHEET 3 AA5 5 ARG B 50 ILE B 56 -1 O ILE B 53 N CYS B 40 SHEET 4 AA5 5 VAL B 101 ASP B 106 -1 O ILE B 103 N LYS B 54 SHEET 5 AA5 5 ASP B 88 ILE B 90 -1 N ASP B 88 O VAL B 104 SHEET 1 AA6 3 THR B 110 ASP B 111 0 SHEET 2 AA6 3 LEU B 155 THR B 159 -1 O LEU B 157 N THR B 110 SHEET 3 AA6 3 ASP B 162 ILE B 165 -1 O LYS B 164 N LEU B 156 SHEET 1 AA7 2 VAL B 145 LEU B 146 0 SHEET 2 AA7 2 ARG B 172 VAL B 173 -1 O ARG B 172 N LEU B 146 LINK C ASP A 124 N NEP A 125 1555 1555 1.32 LINK C NEP A 125 N ILE A 126 1555 1555 1.31 LINK C ASP B 124 N NEP B 125 1555 1555 1.31 LINK C NEP B 125 N ILE B 126 1555 1555 1.31 CISPEP 1 GLY A 22 PRO A 23 0 3.69 CISPEP 2 GLY B 34 ALA B 35 0 -5.00 SITE 1 AC1 17 GLU A 33 GLY A 34 GLY A 37 VAL A 39 SITE 2 AC1 17 ALA A 52 LYS A 54 GLN A 105 ASP A 106 SITE 3 AC1 17 MET A 108 GLU A 109 THR A 110 ASP A 111 SITE 4 AC1 17 LYS A 114 ASN A 154 LEU A 156 ASP A 167 SITE 5 AC1 17 HOH A 503 SITE 1 AC2 17 GLU B 33 GLY B 34 GLY B 37 VAL B 39 SITE 2 AC2 17 ALA B 52 LYS B 54 ILE B 56 GLN B 105 SITE 3 AC2 17 ASP B 106 MET B 108 GLU B 109 THR B 110 SITE 4 AC2 17 ASP B 111 LYS B 114 ASN B 154 LEU B 156 SITE 5 AC2 17 ASP B 167 CRYST1 83.191 83.191 274.493 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003643 0.00000 MASTER 358 0 4 34 22 0 10 6 0 0 0 54 END