HEADER TRANSFERASE/DNA 07-JAN-15 4XIU TITLE BINARY COMPLEX STRUCTURE OF KLENOW FRAGMENT OF TAQ DNA POLYMERASE TITLE 2 I707L MUTANT WITH DNA CONTAINING TTT OVERHANG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTHETIC OLIGONUCLEOTIDE PRIMER STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SYNTHETIC OLIGONUCLEOTIDE TEMPLATE STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: KLENOW FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICS; COMPND 13 SYNONYM: TAQ POLYMERASE 1; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 13 ORGANISM_TAXID: 271; SOURCE 14 GENE: POLA, POL1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.WU REVDAT 2 11-FEB-15 4XIU 1 JRNL REVDAT 1 21-JAN-15 4XIU 0 JRNL AUTH E.Y.WU,A.R.WALSH,E.C.MATERNE,E.P.HILTNER,B.ZIELINSKI, JRNL AUTH 2 B.R.MILLER,L.MAWBY,E.MODESTE,C.A.PARISH,W.M.BARNES, JRNL AUTH 3 M.B.KERMEKCHIEV JRNL TITL A CONSERVATIVE ISOLEUCINE TO LEUCINE MUTATION CAUSES MAJOR JRNL TITL 2 REARRANGEMENTS AND COLD SENSITIVITY IN KLENTAQ1 DNA JRNL TITL 3 POLYMERASE. JRNL REF BIOCHEMISTRY V. 54 881 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25537790 JRNL DOI 10.1021/BI501198F REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4191 REMARK 3 NUCLEIC ACID ATOMS : 530 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.009 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.317 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4XIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.96 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 4KTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.22333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.44667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.44667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.22333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 294 CG CD1 CD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 ARG A 392 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 ARG A 556 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 634 CG CD OE1 OE2 REMARK 470 ILE A 638 CG1 CG2 CD1 REMARK 470 SER A 644 OG REMARK 470 ARG A 651 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 654 CG1 CG2 REMARK 470 GLU A 687 CG CD OE1 OE2 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 ARG A 695 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 GLU A 713 CG CD OE1 OE2 REMARK 470 ARG A 716 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 774 CG CD OE1 OE2 REMARK 470 GLU A 794 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 320 OH TYR A 339 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 432 OE2 GLU A 432 6555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 111 O3' DOC B 112 P 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DOC B 112 O3' - P - OP2 ANGL. DEV. = 9.9 DEGREES REMARK 500 DG C 204 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 214 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 300 105.55 -43.62 REMARK 500 LEU A 367 93.00 52.78 REMARK 500 GLU A 400 40.06 -95.72 REMARK 500 GLU A 423 56.98 -105.68 REMARK 500 VAL A 433 -69.18 -142.37 REMARK 500 ASP A 496 -71.77 -84.45 REMARK 500 GLU A 497 -70.51 -51.46 REMARK 500 VAL A 586 -15.49 -160.28 REMARK 500 GLU A 601 153.19 -41.04 REMARK 500 ASP A 625 96.34 -64.52 REMARK 500 ILE A 638 -55.06 -14.76 REMARK 500 SER A 644 6.49 -66.47 REMARK 500 ARG A 651 -134.10 58.02 REMARK 500 TYR A 686 86.33 -66.77 REMARK 500 GLU A 687 -61.94 170.01 REMARK 500 GLU A 774 1.14 -59.06 REMARK 500 HIS A 784 -68.04 66.61 REMARK 500 TYR A 811 83.39 -168.84 REMARK 500 ALA A 814 -15.48 -44.29 REMARK 500 LYS A 831 45.83 77.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD2 REMARK 620 2 GLU A 786 OE1 70.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 DBREF 4XIU B 101 112 PDB 4XIU 4XIU 101 112 DBREF 4XIU C 203 216 PDB 4XIU 4XIU 203 216 DBREF 4XIU A 294 832 UNP P19821 DPO1_THEAQ 294 832 SEQADV 4XIU LEU A 707 UNP P19821 ILE 707 ENGINEERED MUTATION SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DG DC DOC SEQRES 1 C 14 DT DG DG DG DC DG DC DC DG DT DG DG DT SEQRES 2 C 14 DC SEQRES 1 A 539 LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA PHE SEQRES 2 A 539 VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP ALA SEQRES 3 A 539 ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG VAL SEQRES 4 A 539 HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP LEU SEQRES 5 A 539 LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER VAL SEQRES 6 A 539 LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY ASP SEQRES 7 A 539 ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER ASN SEQRES 8 A 539 THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY GLU SEQRES 9 A 539 TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER GLU SEQRES 10 A 539 ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY GLU SEQRES 11 A 539 GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG PRO SEQRES 12 A 539 LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR GLY VAL SEQRES 13 A 539 ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU GLU SEQRES 14 A 539 VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL PHE SEQRES 15 A 539 ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG ASP SEQRES 16 A 539 GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU PRO SEQRES 17 A 539 ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER THR SEQRES 18 A 539 SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS PRO SEQRES 19 A 539 ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR LYS SEQRES 20 A 539 LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP LEU ILE SEQRES 21 A 539 HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN GLN SEQRES 22 A 539 THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP PRO SEQRES 23 A 539 ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY GLN SEQRES 24 A 539 ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP LEU SEQRES 25 A 539 LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 26 A 539 LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG VAL SEQRES 27 A 539 PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA SER SEQRES 28 A 539 TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO LEU SEQRES 29 A 539 MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL LEU SEQRES 30 A 539 TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU ALA SEQRES 31 A 539 ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG TYR SEQRES 32 A 539 PHE GLN SER PHE PRO LYS VAL ARG ALA TRP LEU GLU LYS SEQRES 33 A 539 THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU THR SEQRES 34 A 539 LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU ALA SEQRES 35 A 539 ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG MET ALA SEQRES 36 A 539 PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU MET SEQRES 37 A 539 LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU GLU SEQRES 38 A 539 MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU LEU SEQRES 39 A 539 VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL ALA SEQRES 40 A 539 ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO LEU SEQRES 41 A 539 ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU ASP SEQRES 42 A 539 TRP LEU SER ALA LYS GLU HET DOC B 112 18 HET MG A 901 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 DOC C9 H14 N3 O6 P FORMUL 4 MG MG 2+ FORMUL 5 HOH *(H2 O) HELIX 1 AA1 GLU A 337 LEU A 342 1 6 HELIX 2 AA2 ARG A 343 LEU A 345 5 3 HELIX 3 AA3 LEU A 352 GLU A 363 1 12 HELIX 4 AA4 ASP A 372 ASP A 381 1 10 HELIX 5 AA5 THR A 386 GLY A 395 1 10 HELIX 6 AA6 GLU A 401 GLY A 418 1 18 HELIX 7 AA7 GLU A 423 VAL A 433 1 11 HELIX 8 AA8 VAL A 433 GLY A 448 1 16 HELIX 9 AA9 ASP A 452 GLY A 479 1 28 HELIX 10 AB1 SER A 486 ASP A 496 1 11 HELIX 11 AB2 SER A 515 LEU A 522 1 8 HELIX 12 AB3 HIS A 526 TYR A 545 1 20 HELIX 13 AB4 PRO A 548 ILE A 553 5 6 HELIX 14 AB5 THR A 588 ALA A 597 1 10 HELIX 15 AB6 GLN A 613 GLY A 624 1 12 HELIX 16 AB7 ASP A 625 GLU A 634 1 10 HELIX 17 AB8 ASP A 637 PHE A 647 1 11 HELIX 18 AB9 ASP A 655 VAL A 669 1 15 HELIX 19 AC1 SER A 674 LEU A 682 1 9 HELIX 20 AC2 GLU A 687 PHE A 700 1 14 HELIX 21 AC3 PHE A 700 GLY A 718 1 19 HELIX 22 AC4 PRO A 731 ALA A 735 5 5 HELIX 23 AC5 VAL A 737 GLU A 774 1 38 HELIX 24 AC6 ARG A 795 GLY A 809 1 15 SHEET 1 AA1 4 GLU A 295 ALA A 297 0 SHEET 2 AA1 4 ARG A 331 ARG A 334 1 O VAL A 332 N GLU A 295 SHEET 3 AA1 4 ALA A 325 ALA A 327 -1 N ALA A 326 O HIS A 333 SHEET 4 AA1 4 PHE A 306 VAL A 307 -1 N PHE A 306 O ALA A 327 SHEET 1 AA2 2 VAL A 310 LEU A 311 0 SHEET 2 AA2 2 LEU A 321 ALA A 323 -1 O ALA A 323 N VAL A 310 SHEET 1 AA3 3 ARG A 559 LEU A 560 0 SHEET 2 AA3 3 VAL A 449 LEU A 451 -1 N VAL A 449 O LEU A 560 SHEET 3 AA3 3 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 AA4 2 ARG A 563 ASN A 565 0 SHEET 2 AA4 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 AA5 4 ARG A 778 GLN A 782 0 SHEET 2 AA5 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 AA5 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 AA5 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 AA6 2 TYR A 719 GLU A 721 0 SHEET 2 AA6 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DC B 111 P DOC B 112 1555 1555 1.72 LINK OD2 ASP A 610 MG MG A 901 1555 1555 2.37 LINK OE1 GLU A 786 MG MG A 901 1555 1555 2.86 CISPEP 1 ASP A 578 PRO A 579 0 1.23 SITE 1 AC1 2 ASP A 610 GLU A 786 CRYST1 110.030 110.030 90.670 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009088 0.005247 0.000000 0.00000 SCALE2 0.000000 0.010494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011029 0.00000 MASTER 352 0 2 24 17 0 1 6 0 0 0 45 END