HEADER OXIDOREDUCTASE 23-DEC-14 4XEH TITLE APO STRUCTURE OF KARI FROM IGNISPHAERA AGGREGANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETOHYDROXY-ACID ISOMEROREDUCTASE,ALPHA-KETO-BETA- COMPND 5 HYDROXYLACYL REDUCTOISOMERASE; COMPND 6 EC: 1.1.1.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IGNISPHAERA AGGREGANS; SOURCE 3 ORGANISM_TAXID: 583356; SOURCE 4 STRAIN: DSM 17230 / JCM 13409 / AQ1.S1; SOURCE 5 GENE: ILVC, IGAG_1561; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS ROSSMANN FOLD, KARI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.B.CAHN,S.BRINKMANN-CHEN,F.H.ARNOLD REVDAT 2 09-SEP-15 4XEH 1 REMARK REVDAT 1 22-APR-15 4XEH 0 JRNL AUTH J.K.CAHN,S.BRINKMANN-CHEN,T.SPATZAL,J.A.WIIG,A.R.BULLER, JRNL AUTH 2 O.EINSLE,Y.HU,M.W.RIBBE,F.H.ARNOLD JRNL TITL COFACTOR SPECIFICITY MOTIFS AND THE INDUCED FIT MECHANISM IN JRNL TITL 2 CLASS I KETOL-ACID REDUCTOISOMERASES. JRNL REF BIOCHEM.J. V. 468 475 2015 JRNL REFN ESSN 1470-8728 JRNL PMID 25849365 JRNL DOI 10.1042/BJ20150183 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BRINKMANN-CHEN,J.K.CAHN,F.H.ARNOLD REMARK 1 TITL UNCOVERING RARE NADH-PREFERRING KETOL-ACID REMARK 1 TITL 2 REDUCTOISOMERASES. REMARK 1 REF METAB. ENG. V. 26C 17 2014 REMARK 1 REFN ISSN 1096-7184 REMARK 1 PMID 25172159 REMARK 1 DOI 10.1016/J.YMBEN.2014.08.003 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 68932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3474 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3724 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -1.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.417 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2605 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2582 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3506 ; 1.926 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5951 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2890 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 559 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1306 ; 4.186 ; 2.699 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1305 ; 4.187 ; 2.698 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1629 ; 4.863 ; 4.069 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5183 ; 5.970 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 34 ;27.868 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5208 ;17.647 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4XEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL K-B FOCUSING MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.391 REMARK 200 RESOLUTION RANGE LOW (A) : 57.849 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.96300 REMARK 200 R SYM FOR SHELL (I) : 1.68900 REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6, 22% POLYETHYLENE REMARK 280 GLYCOL MONOMETHYLETHER 5000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.74100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.17500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.74100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.17500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 202.44600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 224.70000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 329 REMARK 465 LYS A 330 REMARK 465 GLN A 331 REMARK 465 ILE A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 HIS A 335 REMARK 465 LEU A 336 REMARK 465 GLU A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 327 N CA CB CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 131 OE1 GLU A 231 2587 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 222 CD GLU A 222 OE1 0.087 REMARK 500 TYR A 240 CZ TYR A 240 OH -0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 12 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 38 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 MET A 65 CA - CB - CG ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 273 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 281 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 43.65 -144.12 REMARK 500 SER A 93 -4.49 -145.59 REMARK 500 SER A 182 -158.20 -137.90 REMARK 500 ILE A 198 -54.24 -140.12 REMARK 500 ASP A 268 -167.92 -114.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 4XEH A 1 335 UNP E0SRA9 E0SRA9_IGNAA 1 335 SEQADV 4XEH LEU A 336 UNP E0SRA9 EXPRESSION TAG SEQADV 4XEH GLU A 337 UNP E0SRA9 EXPRESSION TAG SEQADV 4XEH HIS A 338 UNP E0SRA9 EXPRESSION TAG SEQADV 4XEH HIS A 339 UNP E0SRA9 EXPRESSION TAG SEQADV 4XEH HIS A 340 UNP E0SRA9 EXPRESSION TAG SEQADV 4XEH HIS A 341 UNP E0SRA9 EXPRESSION TAG SEQADV 4XEH HIS A 342 UNP E0SRA9 EXPRESSION TAG SEQADV 4XEH HIS A 343 UNP E0SRA9 EXPRESSION TAG SEQRES 1 A 343 MET ALA LYS ILE TYR LYS ASP GLU ASP ILE SER LEU GLU SEQRES 2 A 343 PRO ILE LYS ASN LYS THR ILE ALA ILE LEU GLY TYR GLY SEQRES 3 A 343 SER GLN GLY ARG ALA TRP ALA LEU ASN LEU ARG ASP SER SEQRES 4 A 343 GLY LEU ASN VAL VAL VAL GLY LEU GLU ARG GLN GLY ASP SEQRES 5 A 343 SER TRP ARG ARG ALA ILE ASP ASP GLY PHE LYS PRO MET SEQRES 6 A 343 TYR THR LYS ASP ALA VAL ALA ILE ALA ASP ILE ILE VAL SEQRES 7 A 343 PHE LEU VAL PRO ASP MET VAL GLN LYS SER LEU TRP LEU SEQRES 8 A 343 ASN SER VAL LYS ASP PHE MET LYS LYS GLY ALA ASP LEU SEQRES 9 A 343 VAL PHE ALA HIS GLY PHE ASN ILE HIS PHE LYS ILE ILE SEQRES 10 A 343 GLU PRO PRO LYS ASP SER ASP VAL TYR MET ILE ALA PRO SEQRES 11 A 343 LYS SER PRO GLY PRO ILE VAL ARG ARG SER TYR GLU MET SEQRES 12 A 343 GLY GLY GLY VAL PRO ALA LEU VAL ALA VAL TYR GLN ASN SEQRES 13 A 343 VAL SER GLY GLU ALA LEU GLN LYS ALA LEU ALA ILE ALA SEQRES 14 A 343 LYS GLY ILE GLY CYS ALA ARG ALA GLY VAL ILE GLU SER SEQRES 15 A 343 THR PHE LYS GLU GLU THR GLU THR ASP LEU PHE GLY GLU SEQRES 16 A 343 GLN VAL ILE LEU VAL GLY GLY ILE MET GLU LEU ILE LYS SEQRES 17 A 343 ALA SER PHE GLU THR LEU VAL GLU GLU GLY TYR GLN PRO SEQRES 18 A 343 GLU VAL ALA TYR PHE GLU THR VAL ASN GLU LEU LYS LEU SEQRES 19 A 343 ILE VAL ASP LEU ILE TYR GLU LYS GLY LEU THR GLY MET SEQRES 20 A 343 LEU ARG ALA VAL SER ASP THR ALA LYS TYR GLY GLY ILE SEQRES 21 A 343 THR VAL GLY LYS PHE ILE ILE ASP LYS SER VAL ARG ASP SEQRES 22 A 343 LYS MET LYS ILE VAL LEU GLU ARG ILE ARG SER GLY GLU SEQRES 23 A 343 PHE ALA ARG GLU TRP ILE LYS GLU TYR GLU ARG GLY MET SEQRES 24 A 343 PRO THR VAL PHE LYS GLU LEU SER GLU LEU GLU GLY SER SEQRES 25 A 343 THR ILE GLU THR VAL GLY ARG LYS LEU ARG GLU MET MET SEQRES 26 A 343 PHE ARG GLY MET LYS GLN ILE SER SER HIS LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS FORMUL 2 HOH *101(H2 O) HELIX 1 AA1 LYS A 6 ILE A 10 5 5 HELIX 2 AA2 LEU A 12 LYS A 16 5 5 HELIX 3 AA3 GLY A 26 SER A 39 1 14 HELIX 4 AA4 GLY A 51 ASP A 60 1 10 HELIX 5 AA5 THR A 67 ILE A 73 1 7 HELIX 6 AA6 PRO A 82 MET A 84 5 3 HELIX 7 AA7 VAL A 85 VAL A 94 1 10 HELIX 8 AA8 GLY A 109 PHE A 114 1 6 HELIX 9 AA9 PRO A 133 MET A 143 1 11 HELIX 10 AB1 GLU A 160 ILE A 172 1 13 HELIX 11 AB2 GLY A 173 ALA A 177 5 5 HELIX 12 AB3 THR A 183 ILE A 198 1 16 HELIX 13 AB4 VAL A 200 GLU A 217 1 18 HELIX 14 AB5 GLN A 220 VAL A 229 1 10 HELIX 15 AB6 GLU A 231 VAL A 251 1 21 HELIX 16 AB7 SER A 252 ILE A 267 1 16 HELIX 17 AB8 ASP A 268 SER A 284 1 17 HELIX 18 AB9 GLY A 285 ARG A 297 1 13 HELIX 19 AC1 MET A 299 GLY A 311 1 13 HELIX 20 AC2 SER A 312 PHE A 326 1 15 SHEET 1 AA1 9 ILE A 4 TYR A 5 0 SHEET 2 AA1 9 VAL A 179 GLU A 181 -1 O VAL A 179 N TYR A 5 SHEET 3 AA1 9 ALA A 149 GLN A 155 1 N ALA A 149 O ILE A 180 SHEET 4 AA1 9 VAL A 125 PRO A 130 -1 N ALA A 129 O LEU A 150 SHEET 5 AA1 9 ASP A 103 PHE A 106 1 N LEU A 104 O TYR A 126 SHEET 6 AA1 9 ILE A 76 PHE A 79 1 N PHE A 79 O VAL A 105 SHEET 7 AA1 9 THR A 19 LEU A 23 1 N ALA A 21 O ILE A 76 SHEET 8 AA1 9 ASN A 42 LEU A 47 1 O VAL A 44 N ILE A 22 SHEET 9 AA1 9 MET A 65 TYR A 66 1 O MET A 65 N VAL A 45 CRYST1 46.065 67.482 112.350 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008901 0.00000 MASTER 386 0 0 20 9 0 0 6 0 0 0 27 END