HEADER OXIDOREDUCTASE 12-DEC-14 4XA8 TITLE CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE TITLE 2 FROM XANTHOBACTER AUTOTROPHICUS PY2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE NAD-BINDING; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOBACTER AUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 78245; SOURCE 4 STRAIN: ATCC BAA-1158 / PY2; SOURCE 5 GENE: XAUT_2571; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 2 NYSGRC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.B.HANDING,O.A.GASIOROWSKA,I.G.SHABALIN,M.T.CYMBOROWSKI,J.BONANNO, AUTHOR 2 S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 3 (NYSGRC) REVDAT 3 20-SEP-17 4XA8 1 REMARK REVDAT 2 30-SEP-15 4XA8 1 REMARK REVDAT 1 14-JAN-15 4XA8 0 JRNL AUTH K.B.HANDING,O.A.GASIOROWSKA,I.G.SHABALIN,M.T.CYMBOROWSKI, JRNL AUTH 2 J.BONANNO,S.C.ALMO,W.MINOR, JRNL AUTH 3 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF D-ISOMER SPECIFIC 2-HYDROXYACID JRNL TITL 2 DEHYDROGENASE FROM XANTHOBACTER AUTOTROPHICUS PY2. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 22262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -1.24000 REMARK 3 B33 (A**2) : 2.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2335 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2264 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3186 ; 1.639 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5177 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 5.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;33.127 ;22.449 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;13.682 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2659 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 1.518 ; 2.130 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1203 ; 1.518 ; 2.128 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1502 ; 2.154 ; 3.183 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0320 -8.9340 -14.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1851 REMARK 3 T33: 0.0772 T12: 0.0122 REMARK 3 T13: 0.0181 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 6.1968 L22: 5.3818 REMARK 3 L33: 5.3379 L12: 3.6509 REMARK 3 L13: 0.6913 L23: -0.3052 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.0388 S13: 0.1806 REMARK 3 S21: -0.0573 S22: -0.0405 S23: 0.4234 REMARK 3 S31: 0.0303 S32: -0.5860 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8760 -6.5600 -5.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1556 REMARK 3 T33: 0.0097 T12: -0.0156 REMARK 3 T13: 0.0172 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.9812 L22: 6.0629 REMARK 3 L33: 7.3143 L12: 1.3352 REMARK 3 L13: -0.5296 L23: 0.6110 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: -0.1698 S13: 0.0071 REMARK 3 S21: 0.5111 S22: -0.1187 S23: 0.1579 REMARK 3 S31: -0.1245 S32: -0.2513 S33: 0.0573 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0000 -15.5490 -6.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.3145 REMARK 3 T33: 0.2616 T12: 0.0950 REMARK 3 T13: -0.0493 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.4051 L22: 8.4713 REMARK 3 L33: 12.3177 L12: -0.2269 REMARK 3 L13: 2.1787 L23: -2.2255 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.1181 S13: -0.0816 REMARK 3 S21: 0.7120 S22: 0.2056 S23: -1.1290 REMARK 3 S31: 0.3815 S32: 0.8439 S33: -0.2335 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1010 -6.3380 -39.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.1608 REMARK 3 T33: 0.1197 T12: -0.0006 REMARK 3 T13: -0.0161 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3591 L22: 2.3514 REMARK 3 L33: 3.8156 L12: 0.5816 REMARK 3 L13: -0.1345 L23: -1.9644 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0439 S13: 0.1206 REMARK 3 S21: 0.0224 S22: 0.0760 S23: 0.0423 REMARK 3 S31: 0.0528 S32: -0.1119 S33: -0.0664 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9050 -19.8640 -32.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1450 REMARK 3 T33: 0.1002 T12: 0.0339 REMARK 3 T13: -0.0070 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.6017 L22: 2.1217 REMARK 3 L33: 3.1029 L12: -0.2467 REMARK 3 L13: -0.1535 L23: -0.3469 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: -0.0848 S13: -0.1210 REMARK 3 S21: -0.0807 S22: 0.0198 S23: -0.0003 REMARK 3 S31: 0.0886 S32: 0.0135 S33: 0.0233 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9830 -9.6590 -23.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.1629 REMARK 3 T33: 0.0532 T12: 0.0444 REMARK 3 T13: -0.0436 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 3.0384 L22: 2.1566 REMARK 3 L33: 1.0332 L12: -0.7960 REMARK 3 L13: 0.6545 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: -0.1784 S12: -0.4359 S13: 0.3471 REMARK 3 S21: 0.2756 S22: 0.1631 S23: -0.1816 REMARK 3 S31: -0.0079 S32: -0.0219 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 254 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5700 0.0690 -25.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1410 REMARK 3 T33: 0.1122 T12: 0.0284 REMARK 3 T13: -0.0329 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.6904 L22: 3.4755 REMARK 3 L33: 1.6292 L12: -1.2883 REMARK 3 L13: -0.7293 L23: 0.5050 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: -0.0755 S13: 0.1967 REMARK 3 S21: 0.1877 S22: 0.0718 S23: -0.0414 REMARK 3 S31: -0.1530 S32: -0.1578 S33: 0.0257 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0440 -21.2980 -13.0570 REMARK 3 T TENSOR REMARK 3 T11: 0.3003 T22: 0.0904 REMARK 3 T33: 0.0914 T12: -0.0723 REMARK 3 T13: 0.0108 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.5131 L22: 6.4896 REMARK 3 L33: 6.5260 L12: -1.4887 REMARK 3 L13: 0.4514 L23: -1.9561 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.0375 S13: -0.4592 REMARK 3 S21: 0.2712 S22: 0.0218 S23: 0.1964 REMARK 3 S31: 0.9715 S32: -0.1446 S33: -0.0445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4XA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: 3KBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 11 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE, 0.5 REMARK 280 MM TCEP AND 10 MM NADH WERE MIXED WITH 0.2 UL OF THE TOP96 REMARK 280 CONDITION #34 (0.2M MAGNESIUM CHLORIDE, 6-HYDRATE, 0.1M HEPES, REMARK 280 25%W/V PEG 3350 PH=7.5) AND EQUILIBRATED AGAINST 1.5 M NACL REMARK 280 SOLUTION IN 96 WELL 3 DROP CRYSTALLIZATION PLATE (SWISSCI). REMARK 280 BEFORE CRYSTALLIZATION PROTEIN WAS INCUBATED WITH 1/50 V/V OF 1 REMARK 280 MG/ML TEV SOLUTION AT 289 K FOR 1 HOUR, VAPOR DIFFUSION, SITTING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.48350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.48350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.85700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.85700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.48350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.85700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.48350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.38100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.85700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -77.48350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 78 REMARK 465 GLY A 79 REMARK 465 VAL A 80 REMARK 465 ASP A 81 REMARK 465 ALA A 82 REMARK 465 LEU A 83 REMARK 465 VAL A 84 REMARK 465 ALA A 85 REMARK 465 ASP A 314 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 ARG A 317 REMARK 465 GLY A 318 REMARK 465 TYR A 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 6 OG REMARK 470 HIS A 61 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 LEU A 89 CG CD1 CD2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 210 CD OE1 OE2 REMARK 470 ARG A 234 NE CZ NH1 NH2 REMARK 470 VAL A 313 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 58 58.51 39.04 REMARK 500 ALA A 233 -86.09 -91.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-015257 RELATED DB: TARGETTRACK DBREF 4XA8 A 1 319 UNP A7IIH0 A7IIH0_XANP2 1 319 SEQADV 4XA8 SER A 0 UNP A7IIH0 EXPRESSION TAG SEQRES 1 A 320 SER MET ASN GLU GLN ALA SER GLY ALA LEU VAL PHE TYR SEQRES 2 A 320 SER ALA VAL ASP ILE GLY GLN ASP TRP LYS SER ALA LEU SEQRES 3 A 320 GLN ALA ALA HIS PRO GLY LEU ASP VAL ARG ILE ALA ARG SEQRES 4 A 320 ALA GLY ASP GLY HIS VAL GLU GLY ASP PRO GLU GLU VAL SEQRES 5 A 320 ARG TYR ALA LEU VAL TRP LYS PRO PRO HIS GLY PHE PHE SEQRES 6 A 320 ALA ARG PHE PRO ASN LEU LYS LEU VAL ILE ASN LEU GLY SEQRES 7 A 320 ALA GLY VAL ASP ALA LEU VAL ALA ARG ASP ASP LEU PRO SEQRES 8 A 320 ASP VAL PRO VAL THR ARG LEU SER ASP PRO ASN MET SER SEQRES 9 A 320 GLN MET MET ALA SER PHE VAL LEU PHE CYS VAL LEU ARG SEQRES 10 A 320 HIS ALA ARG ASP ILE PRO THR PHE GLU ARG ALA GLN ARG SEQRES 11 A 320 GLU GLY ARG TRP HIS TYR VAL HIS PRO ARG THR ALA ALA SEQRES 12 A 320 GLU ILE ARG VAL GLY VAL LEU GLY LEU GLY ASP LEU GLY SEQRES 13 A 320 ALA ALA ALA ALA LEU GLU LEU ALA ARG HIS GLY PHE ASP SEQRES 14 A 320 VAL ARG GLY TRP SER ARG THR PRO LYS ALA LEU GLU GLY SEQRES 15 A 320 VAL SER CYS PHE HIS GLY LEU GLU ALA LEU PRO GLY PHE SEQRES 16 A 320 LEU ALA GLY SER GLU ILE VAL VAL VAL MET LEU PRO LEU SEQRES 17 A 320 THR PRO GLU THR ARG GLY LEU MET ASN ALA GLU ARG LEU SEQRES 18 A 320 ALA HIS LEU PRO ARG GLY ALA LYS PHE ILE ASN VAL ALA SEQRES 19 A 320 ARG GLY PRO VAL VAL ASP GLU ALA ALA LEU ILE ALA ALA SEQRES 20 A 320 LEU ARG SER GLY HIS ILE ALA GLU ALA THR LEU ASP VAL SEQRES 21 A 320 PHE GLU VAL GLU PRO LEU PRO VAL GLY SER PRO LEU TRP SEQRES 22 A 320 ALA MET ASP ASN VAL LEU VAL THR PRO HIS LEU ALA SER SEQRES 23 A 320 ILE ALA ILE PRO ARG THR ALA ALA PRO GLN ILE VAL GLU SEQRES 24 A 320 ASN ILE ARG ARG ILE GLU ALA GLY GLU PRO VAL LEU ASN SEQRES 25 A 320 GLN VAL ASP PRO ARG ARG GLY TYR FORMUL 2 HOH *173(H2 O) HELIX 1 AA1 ILE A 17 HIS A 29 1 13 HELIX 2 AA2 ASP A 47 GLU A 49 5 3 HELIX 3 AA3 GLY A 62 PHE A 67 5 6 HELIX 4 AA4 ASN A 101 ARG A 119 1 19 HELIX 5 AA5 ASP A 120 GLU A 130 1 11 HELIX 6 AA6 THR A 140 GLU A 143 5 4 HELIX 7 AA7 GLY A 152 HIS A 165 1 14 HELIX 8 AA8 ALA A 190 GLY A 197 1 8 HELIX 9 AA9 ASN A 216 LEU A 223 1 8 HELIX 10 AB1 ARG A 234 VAL A 238 5 5 HELIX 11 AB2 ASP A 239 SER A 249 1 11 HELIX 12 AB3 ILE A 288 ALA A 305 1 18 SHEET 1 AA1 5 ASP A 33 ILE A 36 0 SHEET 2 AA1 5 ALA A 8 TYR A 12 1 N LEU A 9 O ASP A 33 SHEET 3 AA1 5 VAL A 51 VAL A 56 1 O ARG A 52 N ALA A 8 SHEET 4 AA1 5 LEU A 72 ASN A 75 1 O ILE A 74 N ALA A 54 SHEET 5 AA1 5 VAL A 94 ARG A 96 1 O THR A 95 N ASN A 75 SHEET 1 AA2 7 SER A 183 HIS A 186 0 SHEET 2 AA2 7 ASP A 168 SER A 173 1 N GLY A 171 O PHE A 185 SHEET 3 AA2 7 ARG A 145 LEU A 149 1 N VAL A 146 O ARG A 170 SHEET 4 AA2 7 ILE A 200 VAL A 203 1 O VAL A 202 N GLY A 147 SHEET 5 AA2 7 ALA A 227 ASN A 231 1 O ILE A 230 N VAL A 203 SHEET 6 AA2 7 ILE A 252 LEU A 257 1 O THR A 256 N ASN A 231 SHEET 7 AA2 7 VAL A 277 VAL A 279 1 O LEU A 278 N LEU A 257 CISPEP 1 GLU A 263 PRO A 264 0 -4.02 CRYST1 58.762 63.714 154.967 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006453 0.00000 MASTER 501 0 0 12 12 0 0 6 0 0 0 25 END