HEADER TRANSFERASE 10-DEC-14 4X8L TITLE CRYSTAL STRUCTURE OF E. COLI ADENYLATE KINASE P177A MUTANT IN COMPLEX TITLE 2 WITH INHIBITOR AP5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK,ATP-AMP TRANSPHOSPHORYLASE,ATP:AMP PHOSPHOTRANSFERASE, COMPND 5 ADENYLATE MONOPHOSPHATE KINASE; COMPND 6 EC: 2.7.4.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: ADK, DNAW, PLSA, B0474, JW0463; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENYLATE KINASE, P177A, AP5A, PROTEIN DYNAMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.SAUER-ERIKSSON,M.KOVERMANN,J.ADEN,C.GRUNDSTROM,M.WOLF-WATZ, AUTHOR 2 U.H.SAUER REVDAT 1 22-JUL-15 4X8L 0 JRNL AUTH M.KOVERMANN,J.ADEN,C.GRUNDSTROM,A.ELISABETH SAUER-ERIKSSON, JRNL AUTH 2 U.H.SAUER,M.WOLF-WATZ JRNL TITL STRUCTURAL BASIS FOR CATALYTICALLY RESTRICTIVE DYNAMICS OF A JRNL TITL 2 HIGH-ENERGY ENZYME STATE. JRNL REF NAT COMMUN V. 6 7644 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26138143 JRNL DOI 10.1038/NCOMMS8644 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 52935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0000 - 4.5298 0.99 2820 166 0.1603 0.1724 REMARK 3 2 4.5298 - 3.5981 1.00 2707 160 0.1361 0.1569 REMARK 3 3 3.5981 - 3.1440 1.00 2690 157 0.1449 0.1898 REMARK 3 4 3.1440 - 2.8569 1.00 2680 146 0.1644 0.1834 REMARK 3 5 2.8569 - 2.6523 1.00 2663 131 0.1719 0.2278 REMARK 3 6 2.6523 - 2.4960 1.00 2622 152 0.1751 0.1861 REMARK 3 7 2.4960 - 2.3711 1.00 2688 135 0.1661 0.1795 REMARK 3 8 2.3711 - 2.2680 1.00 2631 138 0.1649 0.2199 REMARK 3 9 2.2680 - 2.1807 1.00 2654 132 0.1708 0.2149 REMARK 3 10 2.1807 - 2.1055 1.00 2621 150 0.1793 0.2338 REMARK 3 11 2.1055 - 2.0396 1.00 2642 118 0.1912 0.2331 REMARK 3 12 2.0396 - 1.9814 1.00 2651 133 0.1882 0.2091 REMARK 3 13 1.9814 - 1.9292 1.00 2581 146 0.1897 0.2492 REMARK 3 14 1.9292 - 1.8822 1.00 2625 152 0.2041 0.2284 REMARK 3 15 1.8822 - 1.8394 0.99 2601 134 0.2111 0.2684 REMARK 3 16 1.8394 - 1.8002 0.98 2601 121 0.2288 0.2940 REMARK 3 17 1.8002 - 1.7642 0.99 2607 117 0.2569 0.2988 REMARK 3 18 1.7642 - 1.7310 0.98 2536 153 0.2790 0.3447 REMARK 3 19 1.7310 - 1.7000 0.97 2562 127 0.3105 0.3833 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3594 REMARK 3 ANGLE : 0.872 4894 REMARK 3 CHIRALITY : 0.031 548 REMARK 3 PLANARITY : 0.003 622 REMARK 3 DIHEDRAL : 13.156 1390 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1AKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4K, 0.2 M AMAC, 0.1 M TRIS REMARK 280 -HCL, AP5A IN FIVE TIME STOICHIOMETRIC EXCESS, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.28600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.33250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.28600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.33250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 499 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 530 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 MET A 1 O HOH A 761 1.53 REMARK 500 HE3 MET A 174 O HOH A 625 1.99 REMARK 500 O HOH B 727 O HOH B 747 2.00 REMARK 500 O HOH A 666 O HOH A 711 2.02 REMARK 500 OE1 GLU A 70 O HOH A 807 2.06 REMARK 500 O HOH B 420 O HOH B 481 2.15 REMARK 500 O HOH B 687 O HOH B 731 2.16 REMARK 500 O HOH A 830 O HOH A 834 2.18 REMARK 500 OE1 GLU A 70 O HOH A 675 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 456 O HOH A 480 4556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 64.70 -160.18 REMARK 500 ASN B 138 63.54 -161.84 REMARK 500 ASP B 159 50.06 -98.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 764 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 769 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 814 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B 635 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 708 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 715 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 726 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 744 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 766 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B 805 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD1 REMARK 620 2 ASP A 84 OD2 45.2 REMARK 620 3 AP5 A 301 O2B 114.6 115.1 REMARK 620 4 AP5 A 301 O1G 117.9 163.1 68.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 103 O REMARK 620 2 ASN A 190 O 81.8 REMARK 620 3 HOH A 466 O 88.7 168.1 REMARK 620 4 HOH A 485 O 139.7 91.9 90.7 REMARK 620 5 HOH A 431 O 115.1 91.4 99.2 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 84 OD1 REMARK 620 2 ASP B 84 OD2 48.5 REMARK 620 3 AP5 B 301 O2B 115.0 125.2 REMARK 620 4 AP5 B 301 O1G 108.8 156.1 67.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 190 O REMARK 620 2 HOH B 419 O 72.8 REMARK 620 3 HOH B 453 O 81.0 92.8 REMARK 620 4 HOH B 452 O 160.5 89.7 109.1 REMARK 620 5 HOH B 423 O 75.8 94.5 152.4 97.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AKE RELATED DB: PDB REMARK 900 1AKE CONTAINS THE WT PROTEIN IN COMPLEX WITH AP5A DBREF 4X8L A 1 214 UNP P69441 KAD_ECOLI 1 214 DBREF 4X8L B 1 214 UNP P69441 KAD_ECOLI 1 214 SEQADV 4X8L ALA A 177 UNP P69441 PRO 177 ENGINEERED MUTATION SEQADV 4X8L ALA B 177 UNP P69441 PRO 177 ENGINEERED MUTATION SEQRES 1 A 214 MET ARG ILE ILE LEU LEU GLY ALA PRO GLY ALA GLY LYS SEQRES 2 A 214 GLY THR GLN ALA GLN PHE ILE MET GLU LYS TYR GLY ILE SEQRES 3 A 214 PRO GLN ILE SER THR GLY ASP MET LEU ARG ALA ALA VAL SEQRES 4 A 214 LYS SER GLY SER GLU LEU GLY LYS GLN ALA LYS ASP ILE SEQRES 5 A 214 MET ASP ALA GLY LYS LEU VAL THR ASP GLU LEU VAL ILE SEQRES 6 A 214 ALA LEU VAL LYS GLU ARG ILE ALA GLN GLU ASP CYS ARG SEQRES 7 A 214 ASN GLY PHE LEU LEU ASP GLY PHE PRO ARG THR ILE PRO SEQRES 8 A 214 GLN ALA ASP ALA MET LYS GLU ALA GLY ILE ASN VAL ASP SEQRES 9 A 214 TYR VAL LEU GLU PHE ASP VAL PRO ASP GLU LEU ILE VAL SEQRES 10 A 214 ASP ARG ILE VAL GLY ARG ARG VAL HIS ALA PRO SER GLY SEQRES 11 A 214 ARG VAL TYR HIS VAL LYS PHE ASN PRO PRO LYS VAL GLU SEQRES 12 A 214 GLY LYS ASP ASP VAL THR GLY GLU GLU LEU THR THR ARG SEQRES 13 A 214 LYS ASP ASP GLN GLU GLU THR VAL ARG LYS ARG LEU VAL SEQRES 14 A 214 GLU TYR HIS GLN MET THR ALA ALA LEU ILE GLY TYR TYR SEQRES 15 A 214 SER LYS GLU ALA GLU ALA GLY ASN THR LYS TYR ALA LYS SEQRES 16 A 214 VAL ASP GLY THR LYS PRO VAL ALA GLU VAL ARG ALA ASP SEQRES 17 A 214 LEU GLU LYS ILE LEU GLY SEQRES 1 B 214 MET ARG ILE ILE LEU LEU GLY ALA PRO GLY ALA GLY LYS SEQRES 2 B 214 GLY THR GLN ALA GLN PHE ILE MET GLU LYS TYR GLY ILE SEQRES 3 B 214 PRO GLN ILE SER THR GLY ASP MET LEU ARG ALA ALA VAL SEQRES 4 B 214 LYS SER GLY SER GLU LEU GLY LYS GLN ALA LYS ASP ILE SEQRES 5 B 214 MET ASP ALA GLY LYS LEU VAL THR ASP GLU LEU VAL ILE SEQRES 6 B 214 ALA LEU VAL LYS GLU ARG ILE ALA GLN GLU ASP CYS ARG SEQRES 7 B 214 ASN GLY PHE LEU LEU ASP GLY PHE PRO ARG THR ILE PRO SEQRES 8 B 214 GLN ALA ASP ALA MET LYS GLU ALA GLY ILE ASN VAL ASP SEQRES 9 B 214 TYR VAL LEU GLU PHE ASP VAL PRO ASP GLU LEU ILE VAL SEQRES 10 B 214 ASP ARG ILE VAL GLY ARG ARG VAL HIS ALA PRO SER GLY SEQRES 11 B 214 ARG VAL TYR HIS VAL LYS PHE ASN PRO PRO LYS VAL GLU SEQRES 12 B 214 GLY LYS ASP ASP VAL THR GLY GLU GLU LEU THR THR ARG SEQRES 13 B 214 LYS ASP ASP GLN GLU GLU THR VAL ARG LYS ARG LEU VAL SEQRES 14 B 214 GLU TYR HIS GLN MET THR ALA ALA LEU ILE GLY TYR TYR SEQRES 15 B 214 SER LYS GLU ALA GLU ALA GLY ASN THR LYS TYR ALA LYS SEQRES 16 B 214 VAL ASP GLY THR LYS PRO VAL ALA GLU VAL ARG ALA ASP SEQRES 17 B 214 LEU GLU LYS ILE LEU GLY HET AP5 A 301 81 HET MG A 302 1 HET NA A 303 1 HET AP5 B 301 81 HET MG B 302 1 HET NA B 303 1 HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 AP5 2(C20 H29 N10 O22 P5) FORMUL 4 MG 2(MG 2+) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *842(H2 O) HELIX 1 AA1 GLY A 12 GLY A 25 1 14 HELIX 2 AA2 THR A 31 GLY A 42 1 12 HELIX 3 AA3 GLY A 46 GLN A 48 5 3 HELIX 4 AA4 ALA A 49 GLY A 56 1 8 HELIX 5 AA5 THR A 60 ALA A 73 1 14 HELIX 6 AA6 GLN A 74 ARG A 78 5 5 HELIX 7 AA7 THR A 89 GLY A 100 1 12 HELIX 8 AA8 PRO A 112 GLU A 114 5 3 HELIX 9 AA9 LEU A 115 VAL A 121 1 7 HELIX 10 AB1 GLN A 160 THR A 175 1 16 HELIX 11 AB2 ALA A 177 ALA A 188 1 12 HELIX 12 AB3 PRO A 201 GLY A 214 1 14 HELIX 13 AB4 GLY B 12 GLY B 25 1 14 HELIX 14 AB5 THR B 31 GLY B 42 1 12 HELIX 15 AB6 GLY B 46 GLN B 48 5 3 HELIX 16 AB7 ALA B 49 ALA B 55 1 7 HELIX 17 AB8 THR B 60 ALA B 73 1 14 HELIX 18 AB9 GLN B 74 ARG B 78 5 5 HELIX 19 AC1 THR B 89 GLY B 100 1 12 HELIX 20 AC2 PRO B 112 VAL B 121 1 10 HELIX 21 AC3 GLN B 160 THR B 175 1 16 HELIX 22 AC4 ALA B 176 ALA B 188 1 13 HELIX 23 AC5 PRO B 201 GLY B 214 1 14 SHEET 1 AA1 5 GLN A 28 SER A 30 0 SHEET 2 AA1 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 AA1 5 ARG A 2 GLY A 7 1 N ILE A 3 O LEU A 83 SHEET 4 AA1 5 TYR A 105 ASP A 110 1 O LEU A 107 N ILE A 4 SHEET 5 AA1 5 LYS A 192 ASP A 197 1 O ALA A 194 N GLU A 108 SHEET 1 AA2 2 ARG A 123 VAL A 125 0 SHEET 2 AA2 2 VAL A 132 HIS A 134 -1 O TYR A 133 N ARG A 124 SHEET 1 AA3 5 GLN B 28 SER B 30 0 SHEET 2 AA3 5 PHE B 81 ASP B 84 1 O LEU B 82 N ILE B 29 SHEET 3 AA3 5 ARG B 2 GLY B 7 1 N ILE B 3 O LEU B 83 SHEET 4 AA3 5 TYR B 105 ASP B 110 1 O LEU B 107 N ILE B 4 SHEET 5 AA3 5 LYS B 192 ASP B 197 1 O VAL B 196 N GLU B 108 SHEET 1 AA4 2 ARG B 123 VAL B 125 0 SHEET 2 AA4 2 VAL B 132 HIS B 134 -1 O TYR B 133 N ARG B 124 LINK OD1 ASP A 84 MG MG A 302 1555 1555 2.75 LINK OD2 ASP A 84 MG MG A 302 1555 1555 2.93 LINK O VAL A 103 NA NA A 303 1555 1555 2.43 LINK O ASN A 190 NA NA A 303 1555 1555 2.37 LINK OD1 ASP B 84 MG MG B 302 1555 1555 2.64 LINK OD2 ASP B 84 MG MG B 302 1555 1555 2.71 LINK O ASN B 190 NA NA B 303 1555 1555 2.59 LINK O2B AP5 A 301 MG MG A 302 1555 1555 2.69 LINK O1G AP5 A 301 MG MG A 302 1555 1555 2.61 LINK NA NA A 303 O HOH A 466 1555 1555 2.41 LINK NA NA A 303 O HOH A 485 1555 1555 2.39 LINK O2B AP5 B 301 MG MG B 302 1555 1555 2.49 LINK O1G AP5 B 301 MG MG B 302 1555 1555 2.95 LINK NA NA B 303 O HOH B 419 1555 1555 2.47 LINK NA NA B 303 O HOH B 453 1555 1555 2.46 LINK NA NA A 303 O HOH A 431 1555 4456 2.41 LINK NA NA B 303 O HOH B 452 1555 2655 2.38 LINK NA NA B 303 O HOH B 423 1555 2655 2.42 CISPEP 1 PHE A 86 PRO A 87 0 -4.88 CISPEP 2 PHE B 86 PRO B 87 0 -3.32 SITE 1 AC1 39 PRO A 9 GLY A 10 ALA A 11 GLY A 12 SITE 2 AC1 39 LYS A 13 GLY A 14 THR A 15 THR A 31 SITE 3 AC1 39 GLY A 32 LEU A 35 ARG A 36 MET A 53 SITE 4 AC1 39 LYS A 57 VAL A 59 GLU A 62 VAL A 64 SITE 5 AC1 39 GLY A 85 ARG A 88 GLN A 92 ARG A 119 SITE 6 AC1 39 ARG A 123 VAL A 132 TYR A 133 HIS A 134 SITE 7 AC1 39 PHE A 137 ARG A 156 ARG A 167 GLY A 198 SITE 8 AC1 39 LYS A 200 VAL A 202 MG A 302 HOH A 442 SITE 9 AC1 39 HOH A 529 HOH A 545 HOH A 552 HOH A 560 SITE 10 AC1 39 HOH A 758 HOH A 806 HOH A 829 SITE 1 AC2 3 ASP A 84 AP5 A 301 HOH A 829 SITE 1 AC3 5 VAL A 103 ASN A 190 HOH A 431 HOH A 466 SITE 2 AC3 5 HOH A 485 SITE 1 AC4 40 PRO B 9 GLY B 10 ALA B 11 GLY B 12 SITE 2 AC4 40 LYS B 13 GLY B 14 THR B 15 THR B 31 SITE 3 AC4 40 GLY B 32 LEU B 35 ARG B 36 MET B 53 SITE 4 AC4 40 LYS B 57 VAL B 59 VAL B 64 GLY B 85 SITE 5 AC4 40 ARG B 88 GLN B 92 ARG B 119 ARG B 123 SITE 6 AC4 40 TYR B 133 HIS B 134 PHE B 137 ARG B 156 SITE 7 AC4 40 ASP B 158 ARG B 167 GLY B 198 LYS B 200 SITE 8 AC4 40 VAL B 202 MG B 302 HOH B 454 HOH B 536 SITE 9 AC4 40 HOH B 540 HOH B 545 HOH B 547 HOH B 573 SITE 10 AC4 40 HOH B 611 HOH B 636 HOH B 698 HOH B 737 SITE 1 AC5 3 GLY B 14 ASP B 84 AP5 B 301 SITE 1 AC6 5 ASN B 190 HOH B 419 HOH B 423 HOH B 452 SITE 2 AC6 5 HOH B 453 CRYST1 82.572 72.665 79.309 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012609 0.00000 MASTER 377 0 6 23 14 0 26 6 0 0 0 34 END