HEADER TRANSFERASE 20-NOV-14 4WZQ TITLE MUTANT K20E OF RNA DEPENDENT RNA POLYMERASE 3D FROM FOOT-AND-MOUTH TITLE 2 DISEASE VIRUS COMPLEXED WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEPENDENT-RNA POLYMERASE 3D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1858-2328; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA TEMPLATE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNAPRIMER; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 3 ORGANISM_TAXID: 12110; SOURCE 4 GENE: CDS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS RNA DEPENDENT RNA POLYMERASE, NUCLEAR LOCALIZATION SIGNAL, KEYWDS 2 PICORNAVIRUS, CLOSED RIGHT-HAND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VERDAGUER,C.FERRER-ORTA REVDAT 4 30-SEP-15 4WZQ 1 REVDAT 3 17-JUN-15 4WZQ 1 JRNL REVDAT 2 13-MAY-15 4WZQ 1 JRNL REVDAT 1 06-MAY-15 4WZQ 0 JRNL AUTH C.FERRER-ORTA,I.DE LA HIGUERA,F.CARIDI,M.T.SANCHEZ-APARICIO, JRNL AUTH 2 E.MORENO,C.PERALES,K.SINGH,S.G.SARAFIANOS,F.SOBRINO, JRNL AUTH 3 E.DOMINGO,N.VERDAGUER JRNL TITL MULTIFUNCTIONALITY OF A PICORNAVIRUS POLYMERASE DOMAIN: JRNL TITL 2 NUCLEAR LOCALIZATION SIGNAL AND NUCLEOTIDE RECOGNITION. JRNL REF J.VIROL. V. 89 6848 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25903341 JRNL DOI 10.1128/JVI.03283-14 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 900 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3747 REMARK 3 NUCLEIC ACID ATOMS : 314 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.438 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.362 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.101 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4197 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3751 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5758 ; 0.688 ; 1.882 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8634 ; 0.674 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 3.429 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;29.769 ;23.405 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;12.413 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ; 7.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.043 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4571 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1002 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1905 ; 0.235 ; 3.609 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1904 ; 0.235 ; 3.608 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2380 ; 0.431 ; 5.413 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2381 ; 0.431 ; 5.414 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2291 ; 0.151 ; 3.635 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2290 ; 0.151 ; 3.635 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3377 ; 0.278 ; 5.451 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4754 ; 1.072 ;29.453 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4755 ; 1.072 ;29.455 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1767 26.3049 24.7199 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.2969 REMARK 3 T33: 0.0814 T12: 0.0376 REMARK 3 T13: 0.0036 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 1.0754 L22: 6.3609 REMARK 3 L33: 1.9699 L12: -0.8557 REMARK 3 L13: 0.5218 L23: -0.3827 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: 0.1568 S13: -0.0461 REMARK 3 S21: 0.1260 S22: -0.1396 S23: 0.5692 REMARK 3 S31: 0.1612 S32: -0.3746 S33: 0.0633 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 903 B 910 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5569 33.8201 30.1418 REMARK 3 T TENSOR REMARK 3 T11: 0.4903 T22: 0.5832 REMARK 3 T33: 0.6642 T12: 0.1267 REMARK 3 T13: 0.0758 T23: -0.1614 REMARK 3 L TENSOR REMARK 3 L11: 13.1497 L22: 11.3442 REMARK 3 L33: 6.4320 L12: 10.6577 REMARK 3 L13: 7.2301 L23: 3.5415 REMARK 3 S TENSOR REMARK 3 S11: -0.2637 S12: 0.0573 S13: 0.5848 REMARK 3 S21: -0.3547 S22: 0.1958 S23: 1.2528 REMARK 3 S31: -0.0622 S32: -0.2971 S33: 0.0679 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 914 C 920 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3540 38.4885 27.1777 REMARK 3 T TENSOR REMARK 3 T11: 0.3749 T22: 0.6890 REMARK 3 T33: 0.5741 T12: 0.0638 REMARK 3 T13: -0.0431 T23: -0.0964 REMARK 3 L TENSOR REMARK 3 L11: 8.9827 L22: 13.3782 REMARK 3 L33: 4.2243 L12: -7.1888 REMARK 3 L13: 0.6341 L23: 5.1172 REMARK 3 S TENSOR REMARK 3 S11: -0.2348 S12: -0.3634 S13: -0.1188 REMARK 3 S21: 0.8877 S22: -0.1933 S23: 0.6579 REMARK 3 S31: 0.4751 S32: -0.5286 S33: 0.4282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC RIGID BODY REFINEMENT USING PDB ID 1WNE AS A REMARK 200 MODEL REMARK 200 STARTING MODEL: 1WNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%PEG 4000, 0.2M MG(CH3COO)2, 0.1M REMARK 280 MES PH6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.55267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.77633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.77633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.55267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ARG A 417 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 15 -129.65 -104.75 REMARK 500 MET A 16 85.02 -161.64 REMARK 500 ARG A 17 48.41 -107.45 REMARK 500 THR A 19 88.63 43.53 REMARK 500 GLU A 33 50.30 -90.43 REMARK 500 LYS A 42 50.19 -103.58 REMARK 500 ASP A 106 93.12 -63.05 REMARK 500 PRO A 120 34.21 -93.28 REMARK 500 ASN A 136 -51.79 -125.41 REMARK 500 PHE A 261 53.02 -100.64 REMARK 500 GLU A 286 -104.76 53.79 REMARK 500 ASP A 371 -60.43 68.34 REMARK 500 PHE A 374 78.48 53.37 REMARK 500 LEU A 449 -62.27 -141.70 REMARK 500 CYS A 467 -63.03 -145.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNE RELATED DB: PDB REMARK 900 1WNE CONTAINS THE SAME PROTEIN, BUT THE WILD TYPE REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 1U09 CONTAINS THE SAME PROTEIN, BUT THE WILD TYPE AND WITHOUT RNA DBREF 4WZQ A 1 470 UNP A4H1Z0 A4H1Z0_9PICO 1858 2327 DBREF 4WZQ B 903 910 PDB 4WZQ 4WZQ 903 910 DBREF 4WZQ C 914 920 PDB 4WZQ 4WZQ 914 920 SEQADV 4WZQ GLU A 20 UNP A4H1Z0 LYS 1877 ENGINEERED MUTATION SEQADV 4WZQ ALA A 471 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ ALA A 472 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ LEU A 473 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ GLU A 474 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ HIS A 475 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ HIS A 476 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ HIS A 477 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ HIS A 478 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ HIS A 479 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ HIS A 480 UNP A4H1Z0 EXPRESSION TAG SEQADV 4WZQ HIS A 481 UNP A4H1Z0 EXPRESSION TAG SEQRES 1 A 481 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 481 HIS VAL MET ARG LYS THR GLU LEU ALA PRO THR VAL ALA SEQRES 3 A 481 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 481 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 481 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 A 481 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 481 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 481 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 481 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 481 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 481 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 481 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 481 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 481 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 481 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 481 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 481 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 481 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 481 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 481 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 481 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 481 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 481 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 481 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 481 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 481 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 481 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 481 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 481 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 481 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 481 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 481 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 481 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 481 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 481 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 481 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 481 ASP ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 8 A U G G G C C C SEQRES 1 C 7 U G G G C C C HET MN A 501 1 HETNAM MN MANGANESE (II) ION FORMUL 4 MN MN 2+ FORMUL 5 HOH *12(H2 O) HELIX 1 AA1 THR A 24 ASN A 31 1 8 HELIX 2 AA2 VAL A 51 PHE A 57 1 7 HELIX 3 AA3 SER A 67 GLY A 90 1 24 HELIX 4 AA4 SER A 97 GLY A 104 1 8 HELIX 5 AA5 PRO A 120 GLY A 125 1 6 HELIX 6 AA6 ARG A 127 ILE A 132 1 6 HELIX 7 AA7 GLY A 140 LYS A 152 1 13 HELIX 8 AA8 MET A 170 GLY A 176 1 7 HELIX 9 AA9 PRO A 185 ASN A 206 1 22 HELIX 10 AB1 ASN A 218 GLN A 232 1 15 HELIX 11 AB2 CYS A 249 PHE A 261 1 13 HELIX 12 AB3 ARG A 262 GLY A 266 5 5 HELIX 13 AB4 HIS A 268 THR A 277 1 10 HELIX 14 AB5 ALA A 302 TYR A 323 1 22 HELIX 15 AB6 GLU A 327 TYR A 331 5 5 HELIX 16 AB7 ASP A 349 SER A 359 1 11 HELIX 17 AB8 ALA A 404 SER A 413 1 10 HELIX 18 AB9 THR A 419 VAL A 432 1 14 HELIX 19 AC1 GLY A 435 PHE A 443 1 9 HELIX 20 AC2 SER A 454 CYS A 467 1 14 HELIX 21 AC3 GLY A 468 HIS A 476 1 9 SHEET 1 AA1 5 LEU A 2 ASP A 8 0 SHEET 2 AA1 5 LYS A 288 GLU A 293 -1 O ARG A 289 N ARG A 7 SHEET 3 AA1 5 ASN A 280 TYR A 285 -1 N HIS A 283 O ILE A 290 SHEET 4 AA1 5 CYS A 159 LEU A 163 1 N CYS A 159 O ALA A 284 SHEET 5 AA1 5 ILE A 180 VAL A 183 -1 O VAL A 183 N GLN A 160 SHEET 1 AA2 2 ALA A 22 PRO A 23 0 SHEET 2 AA2 2 PHE A 414 ALA A 415 -1 O ALA A 415 N ALA A 22 SHEET 1 AA3 2 PHE A 34 PRO A 36 0 SHEET 2 AA3 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 AA4 3 ASN A 235 TRP A 237 0 SHEET 2 AA4 3 ASP A 339 SER A 344 -1 O VAL A 342 N TRP A 237 SHEET 3 AA4 3 THR A 332 TYR A 336 -1 N THR A 332 O ALA A 343 SHEET 1 AA5 2 VAL A 239 ASP A 240 0 SHEET 2 AA5 2 THR A 365 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 AA6 3 THR A 384 PHE A 385 0 SHEET 2 AA6 3 ARG A 388 MET A 392 -1 O ARG A 388 N PHE A 385 SHEET 3 AA6 3 TYR A 399 VAL A 402 -1 O VAL A 402 N HIS A 389 LINK OD1 ASP A 339 MN MN A 501 1555 1555 2.66 CISPEP 1 LEU A 119 PRO A 120 0 -1.72 SITE 1 AC1 3 ASP A 238 ASP A 240 ASP A 339 CRYST1 95.160 95.160 101.329 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010509 0.006067 0.000000 0.00000 SCALE2 0.000000 0.012134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009869 0.00000 MASTER 365 0 1 21 17 0 1 6 0 0 0 39 END