HEADER VIRAL PROTEIN 20-NOV-14 4WZL TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN COMPLEX TITLE 2 WITH HBGA TYPE LEA (TRIGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-530); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII-4/SAGA4/2006/JP; SOURCE 3 ORGANISM_TAXID: 546981; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS VIRAL CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 4 29-JUL-20 4WZL 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 04-MAR-15 4WZL 1 SHEET REVDAT 2 04-FEB-15 4WZL 1 JRNL REVDAT 1 17-DEC-14 4WZL 0 JRNL AUTH B.K.SINGH,M.M.LEUTHOLD,G.S.HANSMAN JRNL TITL HUMAN NOROVIRUSES' FONDNESS FOR HISTO-BLOOD GROUP ANTIGENS. JRNL REF J.VIROL. V. 89 2024 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25428879 JRNL DOI 10.1128/JVI.02968-14 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 65702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4804 - 4.8323 0.93 2675 142 0.1842 0.2028 REMARK 3 2 4.8323 - 3.8364 0.98 2740 144 0.1352 0.1747 REMARK 3 3 3.8364 - 3.3517 0.98 2713 143 0.1440 0.1502 REMARK 3 4 3.3517 - 3.0453 0.99 2739 144 0.1483 0.1694 REMARK 3 5 3.0453 - 2.8271 0.99 2761 144 0.1553 0.1592 REMARK 3 6 2.8271 - 2.6604 0.99 2745 145 0.1626 0.1745 REMARK 3 7 2.6604 - 2.5272 0.97 2706 142 0.1592 0.2584 REMARK 3 8 2.5272 - 2.4172 0.98 2706 143 0.1599 0.1725 REMARK 3 9 2.4172 - 2.3242 0.99 2742 143 0.1524 0.1922 REMARK 3 10 2.3242 - 2.2440 0.99 2721 144 0.1585 0.1867 REMARK 3 11 2.2440 - 2.1738 0.99 2717 143 0.1605 0.1855 REMARK 3 12 2.1738 - 2.1117 0.99 2745 144 0.1746 0.1942 REMARK 3 13 2.1117 - 2.0561 0.98 2715 143 0.1750 0.2077 REMARK 3 14 2.0561 - 2.0059 0.96 2656 137 0.1799 0.1893 REMARK 3 15 2.0059 - 1.9603 0.98 2670 141 0.1818 0.1954 REMARK 3 16 1.9603 - 1.9186 0.98 2728 143 0.1933 0.2334 REMARK 3 17 1.9186 - 1.8802 0.99 2696 141 0.1999 0.2499 REMARK 3 18 1.8802 - 1.8447 0.99 2738 144 0.2129 0.2488 REMARK 3 19 1.8447 - 1.8118 0.99 2712 143 0.2155 0.2358 REMARK 3 20 1.8118 - 1.7811 0.99 2715 143 0.2215 0.2289 REMARK 3 21 1.7811 - 1.7524 0.99 2751 144 0.2413 0.2562 REMARK 3 22 1.7524 - 1.7254 0.98 2657 139 0.2561 0.3078 REMARK 3 23 1.7254 - 1.7000 0.96 2674 141 0.2666 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5077 REMARK 3 ANGLE : 1.048 6926 REMARK 3 CHIRALITY : 0.039 774 REMARK 3 PLANARITY : 0.005 906 REMARK 3 DIHEDRAL : 12.773 1849 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 179.4605 -26.5894 37.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1567 REMARK 3 T33: 0.0501 T12: 0.0365 REMARK 3 T13: 0.0219 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.7121 L22: 0.0999 REMARK 3 L33: 0.2902 L12: -0.1152 REMARK 3 L13: 0.1067 L23: -0.0856 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.2358 S13: -0.1359 REMARK 3 S21: 0.0920 S22: 0.0139 S23: 0.0061 REMARK 3 S31: 0.0076 S32: -0.0297 S33: 0.2016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 170.1168 -8.5633 36.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1001 REMARK 3 T33: 0.0488 T12: 0.0000 REMARK 3 T13: -0.0139 T23: -0.0935 REMARK 3 L TENSOR REMARK 3 L11: 0.3799 L22: 0.6131 REMARK 3 L33: 0.6002 L12: -0.1565 REMARK 3 L13: 0.1008 L23: -0.2391 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.2465 S13: 0.2153 REMARK 3 S21: 0.2150 S22: 0.1182 S23: 0.3489 REMARK 3 S31: -0.4811 S32: -0.0525 S33: 0.2823 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 184.6247 -29.4082 42.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.2124 REMARK 3 T33: 0.1130 T12: 0.0248 REMARK 3 T13: -0.0389 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.5794 L22: 0.0795 REMARK 3 L33: 0.3506 L12: -0.0233 REMARK 3 L13: -0.1252 L23: -0.0440 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.4418 S13: -0.1375 REMARK 3 S21: 0.1661 S22: 0.0337 S23: -0.0115 REMARK 3 S31: 0.1064 S32: 0.1138 S33: 0.0556 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 501 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 193.8272 -38.2649 41.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1653 REMARK 3 T33: 0.1945 T12: 0.0339 REMARK 3 T13: 0.0028 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 0.3161 L22: 0.2821 REMARK 3 L33: 0.2909 L12: 0.1423 REMARK 3 L13: -0.2347 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: -0.2321 S13: -0.1226 REMARK 3 S21: 0.1770 S22: 0.0179 S23: -0.1546 REMARK 3 S31: 0.0838 S32: 0.0957 S33: 0.1100 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 172.4820 -31.9016 21.5781 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: -0.1025 REMARK 3 T33: 0.1640 T12: 0.0295 REMARK 3 T13: -0.0504 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 0.1681 L22: 0.1261 REMARK 3 L33: 0.1703 L12: 0.0182 REMARK 3 L13: 0.1598 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.1294 S12: -0.0411 S13: -0.2764 REMARK 3 S21: 0.0211 S22: -0.0148 S23: 0.0056 REMARK 3 S31: 0.2799 S32: 0.0117 S33: 0.2396 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 248 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 171.2905 -25.7497 7.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1516 REMARK 3 T33: 0.0845 T12: 0.0096 REMARK 3 T13: -0.0439 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.5576 L22: 0.2174 REMARK 3 L33: -0.0027 L12: -0.0699 REMARK 3 L13: 0.0072 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: 0.4228 S13: -0.0121 REMARK 3 S21: -0.2097 S22: 0.0119 S23: 0.0003 REMARK 3 S31: -0.0048 S32: -0.2086 S33: 0.0529 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 186.0269 -21.7950 17.9477 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: -0.1107 REMARK 3 T33: 0.1458 T12: 0.0024 REMARK 3 T13: -0.0246 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 0.0611 L22: 0.1603 REMARK 3 L33: 0.3053 L12: -0.0435 REMARK 3 L13: -0.0242 L23: -0.1815 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.0112 S13: 0.0456 REMARK 3 S21: 0.0569 S22: -0.0874 S23: -0.1159 REMARK 3 S31: -0.1397 S32: 0.1435 S33: -0.1680 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 192.7264 -13.7177 15.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: -0.0949 REMARK 3 T33: 0.2296 T12: -0.0220 REMARK 3 T13: 0.0695 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 0.0414 L22: 0.2351 REMARK 3 L33: 0.1292 L12: -0.0157 REMARK 3 L13: 0.0350 L23: 0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0404 S13: -0.0393 REMARK 3 S21: 0.0221 S22: 0.0577 S23: -0.2620 REMARK 3 S31: -0.0853 S32: 0.1317 S33: 0.0317 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 324 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 185.0962 -7.2722 22.5627 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: -0.0113 REMARK 3 T33: 0.1056 T12: -0.0708 REMARK 3 T13: 0.0155 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 0.0327 L22: 0.1327 REMARK 3 L33: 0.0288 L12: -0.0041 REMARK 3 L13: -0.0285 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.1128 S13: 0.1581 REMARK 3 S21: -0.0505 S22: -0.0616 S23: -0.0368 REMARK 3 S31: -0.1267 S32: 0.0754 S33: 0.0152 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 353 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 183.1398 -5.9709 16.3628 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: -0.0755 REMARK 3 T33: 0.1673 T12: -0.0853 REMARK 3 T13: 0.0266 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.2717 L22: 0.2216 REMARK 3 L33: 0.6094 L12: 0.1300 REMARK 3 L13: 0.0301 L23: -0.0520 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.1325 S13: 0.2735 REMARK 3 S21: -0.1388 S22: 0.0395 S23: 0.0211 REMARK 3 S31: -0.4137 S32: -0.0879 S33: -0.0122 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 400 THROUGH 419 ) REMARK 3 ORIGIN FOR THE GROUP (A): 182.4262 -17.1190 3.7327 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.0909 REMARK 3 T33: 0.0713 T12: 0.0181 REMARK 3 T13: 0.0609 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.1680 L22: 0.1154 REMARK 3 L33: 0.0938 L12: -0.0280 REMARK 3 L13: 0.0754 L23: 0.0639 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.1346 S13: 0.0583 REMARK 3 S21: -0.1473 S22: -0.0129 S23: -0.1273 REMARK 3 S31: -0.0707 S32: -0.0198 S33: -0.0840 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 420 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 171.2653 -26.4888 13.8291 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0001 REMARK 3 T33: 0.0671 T12: 0.0464 REMARK 3 T13: 0.0306 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.2453 L22: 0.2414 REMARK 3 L33: 0.5318 L12: -0.1007 REMARK 3 L13: 0.0058 L23: 0.1833 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: 0.1277 S13: -0.0266 REMARK 3 S21: -0.1431 S22: -0.0146 S23: -0.0277 REMARK 3 S31: -0.1434 S32: -0.2128 S33: -0.1370 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 167.2910 -43.0206 16.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.1052 T22: 0.0961 REMARK 3 T33: 0.2730 T12: -0.0206 REMARK 3 T13: -0.0009 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 0.0648 L22: 0.0890 REMARK 3 L33: 0.2616 L12: 0.0555 REMARK 3 L13: 0.1151 L23: 0.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: -0.0168 S13: -0.0725 REMARK 3 S21: 0.1039 S22: 0.0044 S23: -0.0830 REMARK 3 S31: 0.1971 S32: 0.0317 S33: 0.3176 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 484 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 165.4971 -38.1456 11.3482 REMARK 3 T TENSOR REMARK 3 T11: -0.1423 T22: 0.0875 REMARK 3 T33: 0.1993 T12: -0.1109 REMARK 3 T13: -0.0316 T23: -0.1071 REMARK 3 L TENSOR REMARK 3 L11: 0.1455 L22: 0.0759 REMARK 3 L33: 0.0679 L12: 0.0841 REMARK 3 L13: -0.0130 L23: -0.0466 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.0224 S13: -0.0725 REMARK 3 S21: 0.0136 S22: 0.0100 S23: 0.1923 REMARK 3 S31: 0.0885 S32: -0.0399 S33: 0.0975 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 501 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): 162.7303 -38.2660 12.4819 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.2508 REMARK 3 T33: 0.2118 T12: -0.0249 REMARK 3 T13: -0.0528 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.1201 L22: 0.0775 REMARK 3 L33: 0.0903 L12: 0.0093 REMARK 3 L13: 0.0136 L23: 0.0282 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: 0.2572 S13: -0.1719 REMARK 3 S21: -0.1036 S22: 0.0231 S23: 0.1010 REMARK 3 S31: 0.0818 S32: -0.0869 S33: 0.0469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2906 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97250 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82519 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 49.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.4.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PH 6.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.43500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.43500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 763 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 759 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 493 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 302 O HOH A 948 2.07 REMARK 500 ND2 ASN B 302 O HOH B 944 2.08 REMARK 500 O4 NDG D 1 C2 FUC D 3 2.15 REMARK 500 O HOH A 946 O HOH B 841 2.15 REMARK 500 O4 NDG C 1 C2 FUC C 3 2.16 REMARK 500 O HOH A 836 O HOH B 968 2.16 REMARK 500 O PHE B 257 O HOH B 780 2.18 REMARK 500 O PHE A 257 O HOH A 783 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 26.00 -143.74 REMARK 500 GLN A 260 53.18 -142.83 REMARK 500 ASN A 373 -6.99 -149.00 REMARK 500 SER A 442 146.72 -178.54 REMARK 500 VAL A 521 -150.13 -127.02 REMARK 500 SER B 254 26.01 -143.60 REMARK 500 GLN B 260 53.16 -142.48 REMARK 500 ASN B 373 -7.34 -147.93 REMARK 500 SER B 442 146.70 -177.80 REMARK 500 VAL B 521 -150.04 -127.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WZK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN REMARK 900 COMPLEX WITH HBGA TYPE H2 (TRIGLYCAN) REMARK 900 RELATED ID: 4WZE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN REMARK 900 COMPLEX WITH HBGA TYPE LEY (TETRAGLYCAN) REMARK 900 RELATED ID: 4OOX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 DBREF 4WZL A 225 530 UNP B5BTR7 B5BTR7_9CALI 225 530 DBREF 4WZL B 225 530 UNP B5BTR7 B5BTR7_9CALI 225 530 SEQADV 4WZL GLY A 223 UNP B5BTR7 EXPRESSION TAG SEQADV 4WZL SER A 224 UNP B5BTR7 EXPRESSION TAG SEQADV 4WZL GLY B 223 UNP B5BTR7 EXPRESSION TAG SEQADV 4WZL SER B 224 UNP B5BTR7 EXPRESSION TAG SEQRES 1 A 308 GLY SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU SEQRES 2 A 308 GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS SEQRES 3 A 308 LEU PHE THR GLY PRO SER GLY ALA PHE VAL VAL GLN PRO SEQRES 4 A 308 GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY SEQRES 5 A 308 THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG SEQRES 6 A 308 GLY ASP VAL THR HIS ILE ALA GLY SER ARG ASN TYR THR SEQRES 7 A 308 MET ASN LEU ALA SER LEU ASN TRP ASN ASN TYR ASP PRO SEQRES 8 A 308 THR GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE SEQRES 9 A 308 VAL GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR LYS SEQRES 10 A 308 GLY ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR SEQRES 11 A 308 THR GLY SER ALA PRO PHE THR PRO LYS LEU GLY SER VAL SEQRES 12 A 308 GLN PHE SER THR ASP THR GLU ASN ASP PHE GLU THR HIS SEQRES 13 A 308 GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP SEQRES 14 A 308 GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL SEQRES 15 A 308 LEU PRO SER TYR SER GLY ARG ASN VAL HIS ASN VAL HIS SEQRES 16 A 308 LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN SEQRES 17 A 308 LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY SEQRES 18 A 308 TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU SEQRES 19 A 308 TRP VAL GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SEQRES 20 A 308 SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR SEQRES 21 A 308 GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY SEQRES 22 A 308 TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL SEQRES 23 A 308 ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 A 308 ASN GLN PHE TYR THR LEU ALA PRO MET SEQRES 1 B 308 GLY SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU SEQRES 2 B 308 GLU MET THR ASN SER ARG PHE PRO ILE PRO LEU GLU LYS SEQRES 3 B 308 LEU PHE THR GLY PRO SER GLY ALA PHE VAL VAL GLN PRO SEQRES 4 B 308 GLN ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY SEQRES 5 B 308 THR THR GLN LEU SER PRO VAL ASN ILE CYS THR PHE ARG SEQRES 6 B 308 GLY ASP VAL THR HIS ILE ALA GLY SER ARG ASN TYR THR SEQRES 7 B 308 MET ASN LEU ALA SER LEU ASN TRP ASN ASN TYR ASP PRO SEQRES 8 B 308 THR GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE SEQRES 9 B 308 VAL GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR LYS SEQRES 10 B 308 GLY ASP GLY SER THR ARG GLY HIS LYS ALA THR VAL TYR SEQRES 11 B 308 THR GLY SER ALA PRO PHE THR PRO LYS LEU GLY SER VAL SEQRES 12 B 308 GLN PHE SER THR ASP THR GLU ASN ASP PHE GLU THR HIS SEQRES 13 B 308 GLN ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP SEQRES 14 B 308 GLY SER THR THR HIS ARG ASN GLU PRO GLN GLN TRP VAL SEQRES 15 B 308 LEU PRO SER TYR SER GLY ARG ASN VAL HIS ASN VAL HIS SEQRES 16 B 308 LEU ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN SEQRES 17 B 308 LEU LEU PHE PHE ARG SER THR MET PRO GLY CYS SER GLY SEQRES 18 B 308 TYR PRO ASN MET ASP LEU ASP CYS LEU LEU PRO GLN GLU SEQRES 19 B 308 TRP VAL GLN HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SEQRES 20 B 308 SER ASP VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR SEQRES 21 B 308 GLY ARG VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY SEQRES 22 B 308 TYR VAL THR VAL ALA HIS THR GLY GLN HIS ASP LEU VAL SEQRES 23 B 308 ILE PRO PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL SEQRES 24 B 308 ASN GLN PHE TYR THR LEU ALA PRO MET HET NDG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET NDG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET ACT A 605 4 HET ACT A 606 4 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET EDO B 605 4 HET ACT B 606 4 HET ACT B 607 4 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 EDO 9(C2 H6 O2) FORMUL 9 ACT 4(C2 H3 O2 1-) FORMUL 18 HOH *567(H2 O) HELIX 1 AA1 THR A 233 MET A 237 5 5 HELIX 2 AA2 SER A 279 ILE A 283 5 5 HELIX 3 AA3 THR A 359 LEU A 362 5 4 HELIX 4 AA4 PRO A 454 ALA A 465 1 12 HELIX 5 AA5 THR B 233 MET B 237 5 5 HELIX 6 AA6 THR B 359 LEU B 362 5 4 HELIX 7 AA7 PRO B 454 ALA B 465 1 12 HELIX 8 2 GLN B 455 GLU B 464 1 10 HELIX 9 1 GLN A 455 GLU A 464 1 10 SHEET 1 26 1 VAL B 472 ASN B 479 0 SHEET 1 1 1 LYS A 248 GLY A 252 0 SHEET 1 2 1 PHE A 286 HIS A 292 0 SHEET 1 3 1 ASN A 298 LEU A 303 0 SHEET 1 4 1 LYS A 329 THR A 337 0 SHEET 1 5 1 THR A 344 TYR A 352 0 SHEET 1 6 1 SER A 364 THR A 369 0 SHEET 1 7 1 THR A 381 ILE A 389 0 SHEET 1 8 1 GLU A 429 THR A 437 0 SHEET 1 9 1 GLY A 440 GLY A 443 0 SHEET 1 10 1 ASP A 448 CYS A 451 0 SHEET 1 11 1 VAL A 472 ASN A 479 0 SHEET 1 12 1 ARG A 484 HIS A 492 0 SHEET 1 13 1 TYR A 496 ALA A 500 0 SHEET 1 14 1 HIS A 505 ASP A 506 0 SHEET 1 15 1 TYR A 514 VAL A 521 0 SHEET 1 16 1 LYS B 248 GLY B 252 0 SHEET 1 17 1 PHE B 286 HIS B 292 0 SHEET 1 18 1 ASN B 298 LEU B 303 0 SHEET 1 19 1 LYS B 329 THR B 337 0 SHEET 1 20 1 THR B 344 TYR B 352 0 SHEET 1 21 1 SER B 364 THR B 369 0 SHEET 1 22 1 THR B 381 ILE B 389 0 SHEET 1 23 1 GLU B 429 THR B 437 0 SHEET 1 24 1 GLY B 440 GLY B 443 0 SHEET 1 25 1 ASP B 448 CYS B 451 0 SHEET 1 27 1 ARG B 484 HIS B 492 0 SHEET 1 28 1 TYR B 496 ALA B 500 0 SHEET 1 29 1 HIS B 505 ASP B 506 0 SHEET 1 30 1 TYR B 514 VAL B 521 0 LINK O3 NDG C 1 C1 GAL C 2 1555 1555 1.44 LINK O4 NDG C 1 C1 FUC C 3 1555 1555 1.54 LINK O3 NDG D 1 C1 GAL D 2 1555 1555 1.44 LINK O4 NDG D 1 C1 FUC D 3 1555 1555 1.53 CISPEP 1 GLU A 399 PRO A 400 0 -4.30 CISPEP 2 GLU B 399 PRO B 400 0 -4.75 CRYST1 96.870 58.830 124.440 90.00 119.80 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010323 0.000000 0.005912 0.00000 SCALE2 0.000000 0.016998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009261 0.00000 MASTER 515 0 19 9 30 0 0 6 0 0 0 48 END