HEADER TRANSCRIPTION 13-NOV-14 4WXE TITLE CRYSTAL STRUCTURE OF A LACI REGULATOR FROM LACTOBACILLUS CASEI TITLE 2 (LSEI_2103, TARGET EFI-512911) WITH BOUND TRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LACI FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 54-333; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; SOURCE 3 ORGANISM_TAXID: 321967; SOURCE 4 STRAIN: ATCC 334; SOURCE 5 GENE: LSEI_2103; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LACI REGULATOR, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL GENOMICS, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH,S.R.WASSERMAN, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 2 07-OCT-15 4WXE 1 REMARK REVDAT 1 26-NOV-14 4WXE 0 JRNL AUTH M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, JRNL AUTH 2 S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA, JRNL AUTH 3 S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN, JRNL AUTH 4 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A LACI REGULATOR FROM LACTOBACILLUS JRNL TITL 2 CASEI (LSEI_2103, TARGET EFI-512911) WITH BOUND TRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.4769 - 3.7759 1.00 2703 143 0.1592 0.1657 REMARK 3 2 3.7759 - 2.9986 1.00 2632 138 0.1440 0.1518 REMARK 3 3 2.9986 - 2.6200 1.00 2620 143 0.1448 0.1906 REMARK 3 4 2.6200 - 2.3806 1.00 2583 147 0.1343 0.1538 REMARK 3 5 2.3806 - 2.2101 1.00 2592 156 0.1357 0.1668 REMARK 3 6 2.2101 - 2.0799 1.00 2571 133 0.1341 0.1581 REMARK 3 7 2.0799 - 1.9757 1.00 2603 119 0.1324 0.1726 REMARK 3 8 1.9757 - 1.8898 1.00 2578 150 0.1417 0.1630 REMARK 3 9 1.8898 - 1.8170 1.00 2590 125 0.1437 0.1686 REMARK 3 10 1.8170 - 1.7543 1.00 2584 138 0.1411 0.1785 REMARK 3 11 1.7543 - 1.6995 1.00 2535 153 0.1406 0.1703 REMARK 3 12 1.6995 - 1.6509 1.00 2580 129 0.1452 0.1877 REMARK 3 13 1.6509 - 1.6075 1.00 2594 128 0.1505 0.1750 REMARK 3 14 1.6075 - 1.5683 1.00 2568 130 0.1581 0.1795 REMARK 3 15 1.5683 - 1.5326 1.00 2578 122 0.1671 0.2040 REMARK 3 16 1.5326 - 1.5000 1.00 2568 142 0.1811 0.1983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2230 REMARK 3 ANGLE : 1.262 3044 REMARK 3 CHIRALITY : 0.071 348 REMARK 3 PLANARITY : 0.007 403 REMARK 3 DIHEDRAL : 13.497 809 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5086 42.5091 60.4562 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.0873 REMARK 3 T33: 0.1198 T12: -0.0027 REMARK 3 T13: -0.0151 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.1945 L22: 0.0268 REMARK 3 L33: 0.0961 L12: 0.1195 REMARK 3 L13: -0.1178 L23: 0.0128 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0009 S13: 0.1464 REMARK 3 S21: -0.0316 S22: -0.0153 S23: 0.0267 REMARK 3 S31: -0.0584 S32: 0.0451 S33: 0.0124 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0747 25.8727 54.6739 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0825 REMARK 3 T33: 0.1109 T12: 0.0039 REMARK 3 T13: 0.0081 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.1281 L22: 0.2166 REMARK 3 L33: 0.2382 L12: -0.0417 REMARK 3 L13: 0.1127 L23: -0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.0469 S13: 0.0427 REMARK 3 S21: -0.0928 S22: 0.0354 S23: -0.2335 REMARK 3 S31: 0.0226 S32: 0.0906 S33: 0.0115 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5562 13.3760 50.7464 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.0591 REMARK 3 T33: 0.0595 T12: 0.0033 REMARK 3 T13: -0.0287 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.1799 L22: 0.5700 REMARK 3 L33: 0.2964 L12: 0.0689 REMARK 3 L13: 0.0633 L23: -0.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.0247 S13: 0.0174 REMARK 3 S21: -0.1138 S22: -0.0178 S23: 0.0644 REMARK 3 S31: 0.0646 S32: -0.0139 S33: -0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9094 28.6599 69.1453 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0831 REMARK 3 T33: 0.0629 T12: -0.0080 REMARK 3 T13: -0.0243 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.0980 L22: 0.1057 REMARK 3 L33: 0.1076 L12: 0.0125 REMARK 3 L13: -0.0822 L23: 0.0390 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.1238 S13: 0.0579 REMARK 3 S21: 0.1216 S22: 0.0317 S23: 0.0550 REMARK 3 S31: 0.0899 S32: 0.1014 S33: 0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43692 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.473 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.90 REMARK 200 R MERGE FOR SHELL (I) : 0.95200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (30.7 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT); RESERVOIR ((MCSG4 F4), 0.2 M MAGNESIUM CHLORIDE, REMARK 280 0.1 M TRIS PH 8.5, 16%(W/V) PEG 4000, 0.2M LITHIUM CHLORIDE, 20 % REMARK 280 (W/V) PEG 3350); CRYOPROTECTION (80% RESERVOIR + 20% ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 54.02350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.19048 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.49233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 54.02350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.19048 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.49233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 54.02350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.19048 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.49233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 54.02350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.19048 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.49233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 54.02350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.19048 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.49233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 54.02350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.19048 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.49233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.38096 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.98467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 62.38096 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.98467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 62.38096 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.98467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 62.38096 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.98467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 62.38096 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.98467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 62.38096 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.98467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 671 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 SER A 38 REMARK 465 SER A 39 REMARK 465 GLY A 40 REMARK 465 VAL A 41 REMARK 465 ASP A 42 REMARK 465 LEU A 43 REMARK 465 GLY A 44 REMARK 465 THR A 45 REMARK 465 GLU A 46 REMARK 465 ASN A 47 REMARK 465 LEU A 48 REMARK 465 TYR A 49 REMARK 465 PHE A 50 REMARK 465 GLN A 51 REMARK 465 ASP A 318 REMARK 465 THR A 319 REMARK 465 GLN A 320 REMARK 465 PRO A 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 631 O HOH A 657 1.96 REMARK 500 O HOH A 549 O HOH A 571 2.09 REMARK 500 O HOH A 560 O HOH A 665 2.09 REMARK 500 O HOH A 854 O HOH A 877 2.10 REMARK 500 O HOH A 834 O HOH A 895 2.13 REMARK 500 O HOH A 637 O HOH A 875 2.15 REMARK 500 O PRO A 238 O HOH A 911 2.18 REMARK 500 O HOH A 822 O HOH A 872 2.19 REMARK 500 O HOH A 728 O HOH A 736 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 585 O HOH A 629 4556 2.15 REMARK 500 O HOH A 605 O HOH A 627 2655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 100 93.87 -164.36 REMARK 500 ASP A 277 -39.30 127.99 REMARK 500 ARG A 330 -113.92 -127.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 876 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 762 O REMARK 620 2 HOH A 818 O 85.0 REMARK 620 3 HOH A 836 O 85.6 88.3 REMARK 620 4 HOH A 712 O 98.3 100.4 170.7 REMARK 620 5 HOH A 710 O 172.4 92.5 87.1 89.3 REMARK 620 6 HOH A 787 O 97.3 166.8 78.9 92.2 83.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-512911 RELATED DB: TARGETTRACK DBREF 4WXE A 54 333 UNP Q036L9 Q036L9_LACC3 54 333 SEQADV 4WXE MSE A 31 UNP Q036L9 INITIATING METHIONINE SEQADV 4WXE HIS A 32 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE HIS A 33 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE HIS A 34 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE HIS A 35 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE HIS A 36 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE HIS A 37 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE SER A 38 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE SER A 39 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE GLY A 40 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE VAL A 41 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE ASP A 42 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE LEU A 43 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE GLY A 44 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE THR A 45 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE GLU A 46 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE ASN A 47 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE LEU A 48 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE TYR A 49 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE PHE A 50 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE GLN A 51 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE SER A 52 UNP Q036L9 EXPRESSION TAG SEQADV 4WXE MSE A 53 UNP Q036L9 EXPRESSION TAG SEQRES 1 A 303 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 303 GLY THR GLU ASN LEU TYR PHE GLN SER MSE LEU ARG ALA SEQRES 3 A 303 GLN ALA THR GLY ASN ILE GLY VAL LEU VAL SER ARG VAL SEQRES 4 A 303 THR ASN PRO PHE PHE ALA GLY LEU PHE ASP ALA ILE GLU SEQRES 5 A 303 ARG GLU LEU HIS ALA HIS GLY TYR GLN VAL MSE ILE THR SEQRES 6 A 303 GLN THR TYR ASP ASP PRO GLU ALA GLU GLU ARG PHE LEU SEQRES 7 A 303 LYS GLN LEU LYS SER ARG GLU LEU ASP GLY VAL ILE LEU SEQRES 8 A 303 ALA SER VAL GLU ALA PRO ASP ARG VAL MSE ALA VAL ALA SEQRES 9 A 303 LYS ALA PHE PRO GLY ARG VAL VAL VAL VAL ASN ALA ASP SEQRES 10 A 303 VAL GLN ILE PRO GLY ALA THR SER LEU VAL LEU PRO HIS SEQRES 11 A 303 TYR GLN ALA THR ARG ASP ALA LEU ASP TYR LEU PHE ASN SEQRES 12 A 303 GLN GLY HIS ARG ARG PHE ALA TYR VAL SER GLY GLY THR SEQRES 13 A 303 ILE SER GLY ALA HIS HIS GLY GLN SER ARG THR GLN ALA SEQRES 14 A 303 PHE LEU ASP PHE MSE GLN ALA HIS GLN LEU LEU VAL ALA SEQRES 15 A 303 GLN ASP LEU LEU PHE GLY GLN ILE HIS THR ALA LYS GLU SEQRES 16 A 303 GLY GLN ALA VAL GLY LYS GLN LEU ALA SER LEU ALA PRO SEQRES 17 A 303 ASN VAL ARG PRO ASP ALA VAL PHE THR ASN SER ASP GLU SEQRES 18 A 303 VAL ALA VAL GLY VAL ILE ASP SER LEU LEU ALA ALA ASP SEQRES 19 A 303 VAL LYS VAL PRO ASP ASP ILE ALA VAL MSE GLY TYR ASP SEQRES 20 A 303 ASP GLN PRO PHE ALA PRO PHE ALA LYS ILE PRO LEU THR SEQRES 21 A 303 THR VAL HIS GLN PRO VAL ALA SER MSE ALA ALA ALA ALA SEQRES 22 A 303 THR HIS GLU LEU LEU LYS GLY LEU GLY ARG GLN VAL ALA SEQRES 23 A 303 GLN ASP THR GLN PRO THR LEU HIS LEU SER LEU LYS ILE SEQRES 24 A 303 ARG GLN SER ALA MODRES 4WXE MSE A 93 MET MODIFIED RESIDUE MODRES 4WXE MSE A 131 MET MODIFIED RESIDUE MODRES 4WXE MSE A 204 MET MODIFIED RESIDUE MODRES 4WXE MSE A 274 MET MODIFIED RESIDUE MODRES 4WXE MSE A 299 MET MODIFIED RESIDUE HET MSE A 53 17 HET MSE A 93 17 HET MSE A 131 17 HET MSE A 204 17 HET MSE A 274 17 HET MSE A 299 17 HET TRS A 401 8 HET CL A 402 1 HET CL A 403 1 HET EDO A 404 10 HET MG A 405 1 HETNAM MSE SELENOMETHIONINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 CL 2(CL 1-) FORMUL 5 EDO C2 H6 O2 FORMUL 6 MG MG 2+ FORMUL 7 HOH *412(H2 O) HELIX 1 AA1 ASN A 71 HIS A 88 1 18 HELIX 2 AA2 GLU A 102 SER A 113 1 12 HELIX 3 AA3 ALA A 126 PHE A 137 1 12 HELIX 4 AA4 PRO A 159 GLN A 174 1 16 HELIX 5 AA5 GLN A 194 HIS A 207 1 14 HELIX 6 AA6 ALA A 212 ASP A 214 5 3 HELIX 7 AA7 THR A 222 SER A 235 1 14 HELIX 8 AA8 SER A 249 ALA A 263 1 15 HELIX 9 AA9 PHE A 281 ALA A 285 5 5 HELIX 10 AB1 PRO A 295 LEU A 311 1 17 SHEET 1 AA1 5 GLN A 91 GLN A 96 0 SHEET 2 AA1 5 ASN A 61 VAL A 66 1 N VAL A 64 O MSE A 93 SHEET 3 AA1 5 GLY A 118 LEU A 121 1 O ILE A 120 N GLY A 63 SHEET 4 AA1 5 VAL A 141 VAL A 144 1 O VAL A 144 N LEU A 121 SHEET 5 AA1 5 THR A 154 LEU A 156 1 O LEU A 156 N VAL A 143 SHEET 1 AA2 6 LEU A 216 PHE A 217 0 SHEET 2 AA2 6 PHE A 179 VAL A 182 1 N TYR A 181 O PHE A 217 SHEET 3 AA2 6 ALA A 244 PHE A 246 1 O PHE A 246 N ALA A 180 SHEET 4 AA2 6 ALA A 272 ASP A 277 1 O MSE A 274 N VAL A 245 SHEET 5 AA2 6 THR A 290 HIS A 293 1 O THR A 290 N GLY A 275 SHEET 6 AA2 6 SER A 326 LYS A 328 -1 O LYS A 328 N THR A 291 LINK C SER A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N LEU A 54 1555 1555 1.33 LINK C VAL A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N ILE A 94 1555 1555 1.32 LINK C VAL A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ALA A 132 1555 1555 1.32 LINK C PHE A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N GLN A 205 1555 1555 1.33 LINK C VAL A 273 N MSE A 274 1555 1555 1.34 LINK C MSE A 274 N GLY A 275 1555 1555 1.33 LINK C SER A 298 N MSE A 299 1555 1555 1.32 LINK C MSE A 299 N ALA A 300 1555 1555 1.33 LINK MG MG A 405 O HOH A 762 1555 1555 2.08 LINK MG MG A 405 O HOH A 818 1555 1555 2.08 LINK MG MG A 405 O HOH A 836 1555 1555 2.08 LINK MG MG A 405 O HOH A 712 1555 1555 2.11 LINK MG MG A 405 O HOH A 710 1555 1555 2.12 LINK MG MG A 405 O HOH A 787 1555 1555 2.09 CISPEP 1 VAL A 267 PRO A 268 0 6.73 SITE 1 AC1 11 ASN A 71 ARG A 196 ASN A 248 TYR A 276 SITE 2 AC1 11 ASP A 277 GLN A 294 HOH A 674 HOH A 677 SITE 3 AC1 11 HOH A 722 HOH A 737 HOH A 812 SITE 1 AC2 3 ARG A 68 ASN A 71 HOH A 807 SITE 1 AC3 4 ASN A 145 ASP A 147 LEU A 158 HIS A 160 SITE 1 AC4 7 ALA A 223 PRO A 280 PHE A 281 HOH A 531 SITE 2 AC4 7 HOH A 542 HOH A 546 HOH A 585 SITE 1 AC5 6 HOH A 710 HOH A 712 HOH A 762 HOH A 787 SITE 2 AC5 6 HOH A 818 HOH A 836 CRYST1 108.047 108.047 121.477 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009255 0.005344 0.000000 0.00000 SCALE2 0.000000 0.010687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008232 0.00000 MASTER 495 0 11 10 11 0 9 6 0 0 0 24 END